Wall clock time and date at job start Sun Mar 29 2020 21:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38939 * 119.23260 * 2 1 4 4 C 1.36853 * 119.84334 * 179.71356 * 3 2 1 5 5 C 1.41145 * 118.41116 * 0.50758 * 4 3 2 6 6 C 1.40756 * 120.72875 * 179.77389 * 5 4 3 7 7 H 1.08000 * 119.99660 * 136.63465 * 6 5 4 8 8 C 1.40094 * 120.00194 * 316.90292 * 6 5 4 9 9 N 1.30763 * 119.99958 * 2.85477 * 8 6 5 10 10 Si 1.86803 * 120.00172 * 182.85458 * 8 6 5 11 11 H 1.48503 * 109.46992 * 90.00244 * 10 8 6 12 12 H 1.48501 * 109.46964 * 210.00070 * 10 8 6 13 13 H 1.48498 * 109.47158 * 330.00240 * 10 8 6 14 14 C 1.42077 * 118.53505 * 359.49877 * 5 4 3 15 15 C 1.47077 * 120.01326 * 180.27175 * 14 5 4 16 16 C 1.33259 * 125.45774 * 173.10165 * 15 14 5 17 17 C 1.51145 * 109.07604 * 179.85899 * 16 15 14 18 18 N 1.48172 * 105.53436 * 343.24369 * 17 16 15 19 19 C 1.48172 * 103.09690 * 26.41477 * 18 17 16 20 20 N 1.31670 * 119.22846 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.46626 * 270.02254 * 1 2 3 22 22 H 1.08994 * 109.46956 * 30.01939 * 1 2 3 23 23 H 1.09000 * 109.47113 * 150.02281 * 1 2 3 24 24 H 1.07994 * 120.07929 * 359.97438 * 3 2 1 25 25 H 1.08003 * 120.79407 * 180.28221 * 4 3 2 26 26 H 0.97001 * 119.99767 * 179.97438 * 9 8 6 27 27 H 1.07995 * 125.46574 * 359.97438 * 16 15 14 28 28 H 1.09002 * 110.40129 * 224.13216 * 17 16 15 29 29 H 1.08999 * 110.10721 * 102.20688 * 17 16 15 30 30 H 1.00894 * 111.00029 * 145.32079 * 18 17 16 31 31 H 1.08999 * 110.24424 * 214.37489 * 19 18 17 32 32 H 1.08997 * 110.32230 * 92.40482 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2124 0.0000 4 6 3.5540 1.2270 0.0059 5 6 4.2388 -0.0072 0.0009 6 6 5.6457 -0.0490 0.0019 7 1 6.1647 -0.7477 0.6414 8 6 6.3730 0.8193 -0.8225 9 7 5.7470 1.7066 -1.5511 10 14 8.2369 0.7098 -0.8810 11 1 8.6436 -0.2423 -1.9457 12 1 8.8026 2.0512 -1.1739 13 1 8.7461 0.2333 0.4300 14 6 3.4766 -1.2062 0.0009 15 6 4.1568 -2.5103 0.0018 16 6 3.5588 -3.6940 0.1323 17 6 4.6043 -4.7842 0.0786 18 7 5.8104 -4.1491 -0.5024 19 6 5.6468 -2.7221 -0.1385 20 7 2.1500 -1.1491 0.0005 21 1 -0.3632 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6344 2.1411 -0.0004 25 1 4.0970 2.1606 0.0106 26 1 6.2506 2.3081 -2.1217 27 1 2.4971 -3.8495 0.2546 28 1 4.2666 -5.6035 -0.5561 29 1 4.8170 -5.1491 1.0834 30 1 6.6513 -4.5316 -0.0967 31 1 6.0460 -2.0838 -0.9267 32 1 6.1482 -2.5125 0.8063 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243108933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:09 Heat of formation + Delta-G solvation = 47.791449 kcal Electronic energy + Delta-G solvation = -15676.807775 eV Core-core repulsion = 13216.049396 eV Total energy + Delta-G solvation = -2460.758378 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.00082 -37.63615 -34.27854 -32.01131 -30.99296 -29.06130 -28.54363 -26.90696 -24.48847 -21.98771 -21.46616 -20.18891 -17.95933 -17.49827 -16.14755 -15.43685 -14.84951 -14.43020 -14.08141 -13.37238 -13.22838 -12.75666 -12.42406 -12.08265 -11.85195 -11.74805 -11.52229 -11.32378 -11.28273 -11.14954 -11.05559 -10.60720 -10.40898 -9.97309 -9.33575 -9.16216 -8.29188 -8.14843 -7.82414 -7.00745 -6.82126 -4.54327 2.05859 2.70630 2.99618 3.02936 3.08415 3.51776 3.83798 4.56529 4.83861 5.26204 5.43324 5.49364 5.79118 5.93004 5.95924 6.06580 6.16891 6.24180 6.32547 6.43772 6.51945 6.62141 6.73335 6.87000 7.05899 7.09242 7.14500 7.36950 7.51704 7.65179 7.74606 7.82036 7.90754 8.31248 8.58676 8.64897 9.48186 10.10386 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.017278 B = 0.013340 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.194360 B = 2098.477532 C = 3617.283130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.108 4.108 5 C 0.086 3.914 6 C -0.461 4.461 7 H 0.090 0.910 8 C 0.074 3.926 9 N -0.805 5.805 10 Si 0.911 3.089 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.260 1.260 14 C 0.045 3.955 15 C -0.023 4.023 16 C -0.214 4.214 17 C 0.070 3.930 18 N -0.669 5.669 19 C 0.075 3.925 20 N -0.456 5.456 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.283 0.717 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.331 0.669 31 H 0.106 0.894 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -3.233 2.535 4.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C -0.171 4.171 4 C -0.134 4.134 5 C 0.082 3.918 6 C -0.491 4.491 7 H 0.108 0.892 8 C -0.143 4.143 9 N -0.430 5.430 10 Si 0.735 3.265 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.184 1.184 14 C -0.091 4.091 15 C -0.024 4.024 16 C -0.235 4.235 17 C -0.059 4.059 18 N -0.296 5.296 19 C -0.053 4.053 20 N -0.165 5.165 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.525 -3.765 1.630 4.136 hybrid contribution 1.444 1.004 0.794 1.930 sum 0.919 -2.761 2.424 3.787 Atomic orbital electron populations 1.20333 0.91302 1.01185 1.00655 1.20388 0.95043 0.88534 1.09058 1.21332 0.95561 0.97249 1.02985 1.21466 0.92490 0.98935 1.00520 1.18423 0.94383 0.90615 0.88410 1.19563 0.90912 1.17332 1.21342 0.89213 1.25903 1.01124 0.93076 0.94193 1.69691 1.38315 1.14998 1.20044 0.86246 0.81568 0.78677 0.80006 1.18960 1.20108 1.18412 1.19331 0.88016 0.91317 1.10482 1.20323 0.93808 0.91578 0.96717 1.23636 0.98640 0.93255 1.07929 1.21613 0.90543 0.96990 0.96753 1.63921 1.03917 1.04231 1.57573 1.22069 0.94100 0.88582 1.00547 1.66877 1.09774 1.29188 1.10654 0.92912 0.92659 0.92378 0.88059 0.85871 0.90638 0.85119 0.90950 0.94361 0.85499 0.87578 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.15 36.01 0.37 -1.00 16 2 C 0.01 0.28 6.79 -82.40 -0.56 -0.28 16 3 C -0.15 -3.43 9.64 -39.82 -0.38 -3.82 16 4 C -0.11 -2.70 8.68 -38.98 -0.34 -3.04 16 5 C 0.09 2.22 5.45 -106.37 -0.58 1.64 16 6 C -0.46 -11.38 6.23 -37.93 -0.24 -11.62 16 7 H 0.09 2.11 5.25 -52.49 -0.28 1.83 16 8 C 0.07 1.77 5.41 -17.31 -0.09 1.68 16 9 N -0.80 -20.04 11.30 55.56 0.63 -19.41 16 10 Si 0.91 17.95 29.56 -169.99 -5.03 12.92 16 11 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 14 C 0.04 1.14 6.80 -82.40 -0.56 0.58 16 15 C -0.02 -0.52 6.11 -102.56 -0.63 -1.15 16 16 C -0.21 -4.35 10.64 -35.83 -0.38 -4.73 16 17 C 0.07 1.18 7.47 -4.06 -0.03 1.15 16 18 N -0.67 -11.89 7.78 -113.88 -0.89 -12.78 16 19 C 0.07 1.54 5.26 -4.05 -0.02 1.52 16 20 N -0.46 -11.26 9.91 -5.56 -0.06 -11.32 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 25 H 0.12 3.09 6.98 -52.48 -0.37 2.73 16 26 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 27 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.33 4.85 8.92 -39.29 -0.35 4.50 16 31 H 0.11 2.38 6.59 -51.93 -0.34 2.04 16 32 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -27.52 268.23 -8.53 -36.05 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -3.78 Total: 9.57 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -3.45 Total: -19.07 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.31 Total: -43.51 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.52 -8.53 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243108933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.837 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds