Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46764 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.47261 * 29.99888 * 3 2 1 6 6 H 1.48499 * 109.46768 * 150.00156 * 3 2 1 7 7 C 1.39877 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99968 * 197.72991 * 7 2 1 9 9 C 1.40861 * 119.99724 * 17.73220 * 7 2 1 10 10 C 1.41483 * 120.50726 * 23.84633 * 9 7 2 11 11 C 1.36281 * 118.47042 * 179.72949 * 10 9 7 12 12 C 1.40526 * 119.43621 * 0.24793 * 11 10 9 13 13 C 1.46489 * 119.50201 * 179.97438 * 12 11 10 14 14 C 1.33984 * 118.73255 * 359.73759 * 13 12 11 15 15 N 1.37369 * 121.66252 * 180.30961 * 14 13 12 16 16 C 1.46972 * 119.06615 * 346.67527 * 15 14 13 17 17 C 1.53502 * 107.82561 * 44.11307 * 16 15 14 18 18 C 1.50264 * 118.73721 * 180.02562 * 13 12 11 19 19 N 1.33463 * 120.99810 * 359.97438 * 12 11 10 20 20 C 1.31168 * 121.65821 * 0.02562 * 19 12 11 21 21 H 0.97004 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.76569 * 0.02562 * 10 9 7 23 23 H 1.07997 * 120.27637 * 180.27314 * 11 10 9 24 24 H 1.07996 * 119.17359 * 0.59954 * 14 13 12 25 25 H 0.97001 * 120.43694 * 166.41867 * 15 14 13 26 26 H 1.08999 * 109.78785 * 284.53412 * 16 15 14 27 27 H 1.08999 * 109.78815 * 163.69682 * 16 15 14 28 28 H 1.08990 * 109.61372 * 178.79614 * 17 16 15 29 29 H 1.09004 * 109.75121 * 58.36095 * 17 16 15 30 30 H 1.09000 * 109.34846 * 280.28753 * 18 13 12 31 31 H 1.08991 * 109.35302 * 39.84871 * 18 13 12 32 32 H 1.08000 * 119.77867 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4002 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0084 -1.2114 0.0005 8 1 3.0498 -1.2334 0.2854 9 6 1.3542 -2.4024 -0.3705 10 6 0.2081 -2.3642 -1.1991 11 6 -0.3888 -3.5418 -1.5370 12 6 0.1427 -4.7493 -1.0531 13 6 -0.4981 -6.0160 -1.4150 14 6 -1.5844 -5.9874 -2.1987 15 7 -2.2363 -7.1382 -2.5698 16 6 -1.5778 -8.4339 -2.3516 17 6 -0.9582 -8.4155 -0.9473 18 6 0.0843 -7.2968 -0.8875 19 7 1.2226 -4.7596 -0.2689 20 6 1.8293 -3.6508 0.0818 21 1 -0.4851 0.8401 -0.0004 22 1 -0.1820 -1.4238 -1.5595 23 1 -1.2627 -3.5469 -2.1716 24 1 -1.9542 -5.0360 -2.5515 25 1 -3.1203 -7.0960 -2.9668 26 1 -0.7968 -8.5812 -3.0976 27 1 -2.3114 -9.2370 -2.4209 28 1 -0.4790 -9.3736 -0.7463 29 1 -1.7345 -8.2318 -0.2046 30 1 0.9481 -7.5761 -1.4907 31 1 0.3996 -7.1517 0.1456 32 1 2.7009 -3.6945 0.7181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243947329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = 31.398146 kcal Electronic energy + Delta-G solvation = -15184.404565 eV Core-core repulsion = 12722.935319 eV Total energy + Delta-G solvation = -2461.469245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.76765 -37.55248 -34.15789 -32.00031 -31.59858 -30.45550 -28.84083 -25.45924 -24.06210 -22.66439 -21.17587 -20.81434 -17.76768 -17.32178 -17.01414 -15.38036 -14.90269 -14.40610 -14.13645 -13.66742 -13.47642 -12.92559 -12.64968 -12.64233 -12.25783 -11.83708 -11.56133 -11.37024 -11.14656 -11.10236 -10.60713 -10.35312 -10.14949 -9.81636 -9.68804 -9.33113 -8.20344 -7.97405 -7.84418 -6.88476 -6.41283 -4.33754 2.33449 2.96829 3.02460 3.05800 3.10028 3.66161 3.85271 4.02348 4.69287 5.15186 5.32423 5.41607 5.66600 5.78957 5.85654 5.96329 6.08509 6.15662 6.37702 6.53153 6.63773 6.67804 6.81389 6.95710 6.99382 7.15363 7.27327 7.37406 7.78261 7.87991 8.01761 8.13963 8.32573 8.48184 8.69170 8.79994 9.75568 10.05396 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063765 B = 0.005619 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.006221 B = 4981.678414 C = 5312.436005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.059 3.941 10 C -0.136 4.136 11 C -0.144 4.144 12 C 0.036 3.964 13 C -0.145 4.145 14 C 0.079 3.921 15 N -0.754 5.754 16 C 0.125 3.875 17 C -0.138 4.138 18 C -0.051 4.051 19 N -0.461 5.461 20 C -0.019 4.019 21 H 0.283 0.717 22 H 0.123 0.877 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.392 0.608 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 -7.606 -3.794 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.475 4.475 8 H 0.101 0.899 9 C 0.055 3.945 10 C -0.161 4.161 11 C -0.165 4.165 12 C -0.100 4.100 13 C -0.155 4.155 14 C -0.042 4.042 15 N -0.385 5.385 16 C -0.001 4.001 17 C -0.177 4.177 18 C -0.088 4.088 19 N -0.169 5.169 20 C -0.182 4.182 21 H 0.094 0.906 22 H 0.141 0.859 23 H 0.115 0.885 24 H 0.145 0.855 25 H 0.225 0.775 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.374 -8.339 -3.451 9.635 hybrid contribution -0.353 1.826 -0.400 1.902 sum -3.727 -6.513 -3.852 8.434 Atomic orbital electron populations 1.69846 1.07720 1.29563 1.34115 1.25992 0.94778 1.01634 0.92163 0.86233 0.80509 0.80156 0.79431 1.19170 1.20214 1.18404 1.19499 0.98247 0.91113 1.38600 0.89921 1.18559 0.92342 0.93646 0.89977 1.21269 0.98524 0.96953 0.99363 1.21350 0.99798 0.93696 1.01619 1.18816 0.96436 0.90852 1.03897 1.19081 0.99764 0.93152 1.03494 1.20621 0.95910 0.89241 0.98432 1.43834 1.20111 1.03805 1.70792 1.21419 0.96507 0.85511 0.96616 1.21913 0.99614 0.99166 0.96989 1.19858 0.96113 0.91210 1.01635 1.67168 1.07223 1.31723 1.10770 1.22422 1.02709 0.88062 1.05030 0.90613 0.85882 0.88543 0.85538 0.77519 0.93111 0.91635 0.91717 0.91887 0.92651 0.90794 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.98 10.93 55.54 0.61 -19.37 16 2 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.15 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 7 C -0.44 -11.60 9.05 -37.98 -0.34 -11.95 16 8 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 9 C 0.06 1.60 5.59 -106.61 -0.60 1.00 16 10 C -0.14 -3.55 8.72 -39.05 -0.34 -3.89 16 11 C -0.14 -3.47 9.32 -39.42 -0.37 -3.84 16 12 C 0.04 0.87 6.72 -82.97 -0.56 0.31 16 13 C -0.15 -2.95 5.86 -103.01 -0.60 -3.55 16 14 C 0.08 1.37 10.33 -16.57 -0.17 1.20 16 15 N -0.75 -10.39 5.76 -60.48 -0.35 -10.74 16 16 C 0.12 1.55 7.13 -3.52 -0.03 1.52 16 17 C -0.14 -1.92 6.17 -26.46 -0.16 -2.09 16 18 C -0.05 -0.91 5.48 -28.08 -0.15 -1.07 16 19 N -0.46 -11.73 9.45 -9.28 -0.09 -11.82 16 20 C -0.02 -0.50 10.97 -16.78 -0.18 -0.68 16 21 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 22 H 0.12 3.26 6.20 -52.49 -0.33 2.93 16 23 H 0.10 2.03 5.97 -52.49 -0.31 1.72 16 24 H 0.13 2.15 5.76 -52.49 -0.30 1.85 16 25 H 0.39 4.32 8.96 -40.82 -0.37 3.95 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.44 7.79 -51.93 -0.40 1.04 16 32 H 0.12 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -28.80 267.18 -8.23 -37.02 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.80 Total: 9.06 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.60 Total: -21.33 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.17 Total: -41.94 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.80 -8.23 -37.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243947329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.422 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds