Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46764 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.47261 * 29.99888 * 3 2 1 6 6 H 1.48499 * 109.46768 * 150.00156 * 3 2 1 7 7 C 1.39877 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99968 * 197.72991 * 7 2 1 9 9 C 1.40861 * 119.99724 * 17.73220 * 7 2 1 10 10 C 1.41483 * 120.50726 * 23.84633 * 9 7 2 11 11 C 1.36281 * 118.47042 * 179.72949 * 10 9 7 12 12 C 1.40526 * 119.43621 * 0.24793 * 11 10 9 13 13 C 1.46489 * 119.50201 * 179.97438 * 12 11 10 14 14 C 1.33984 * 118.73255 * 359.73759 * 13 12 11 15 15 N 1.37369 * 121.66252 * 180.30961 * 14 13 12 16 16 C 1.46972 * 119.06615 * 346.67527 * 15 14 13 17 17 C 1.53502 * 107.82561 * 44.11307 * 16 15 14 18 18 C 1.50264 * 118.73721 * 180.02562 * 13 12 11 19 19 N 1.33463 * 120.99810 * 359.97438 * 12 11 10 20 20 C 1.31168 * 121.65821 * 0.02562 * 19 12 11 21 21 H 0.97004 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.76569 * 0.02562 * 10 9 7 23 23 H 1.07997 * 120.27637 * 180.27314 * 11 10 9 24 24 H 1.07996 * 119.17359 * 0.59954 * 14 13 12 25 25 H 0.97001 * 120.43694 * 166.41867 * 15 14 13 26 26 H 1.08999 * 109.78785 * 284.53412 * 16 15 14 27 27 H 1.08999 * 109.78815 * 163.69682 * 16 15 14 28 28 H 1.08990 * 109.61372 * 178.79614 * 17 16 15 29 29 H 1.09004 * 109.75121 * 58.36095 * 17 16 15 30 30 H 1.09000 * 109.34846 * 280.28753 * 18 13 12 31 31 H 1.08991 * 109.35302 * 39.84871 * 18 13 12 32 32 H 1.08000 * 119.77867 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4002 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0084 -1.2114 0.0005 8 1 3.0498 -1.2334 0.2854 9 6 1.3542 -2.4024 -0.3705 10 6 0.2081 -2.3642 -1.1991 11 6 -0.3888 -3.5418 -1.5370 12 6 0.1427 -4.7493 -1.0531 13 6 -0.4981 -6.0160 -1.4150 14 6 -1.5844 -5.9874 -2.1987 15 7 -2.2363 -7.1382 -2.5698 16 6 -1.5778 -8.4339 -2.3516 17 6 -0.9582 -8.4155 -0.9473 18 6 0.0843 -7.2968 -0.8875 19 7 1.2226 -4.7596 -0.2689 20 6 1.8293 -3.6508 0.0818 21 1 -0.4851 0.8401 -0.0004 22 1 -0.1820 -1.4238 -1.5595 23 1 -1.2627 -3.5469 -2.1716 24 1 -1.9542 -5.0360 -2.5515 25 1 -3.1203 -7.0960 -2.9668 26 1 -0.7968 -8.5812 -3.0976 27 1 -2.3114 -9.2370 -2.4209 28 1 -0.4790 -9.3736 -0.7463 29 1 -1.7345 -8.2318 -0.2046 30 1 0.9481 -7.5761 -1.4907 31 1 0.3996 -7.1517 0.1456 32 1 2.7009 -3.6945 0.7181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243947329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = 13.880597 kcal Electronic energy + Delta-G solvation = -15185.164183 eV Core-core repulsion = 12722.935319 eV Total energy + Delta-G solvation = -2462.228863 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43360 -39.08829 -35.99711 -33.50123 -33.07111 -32.29822 -30.53929 -27.21608 -25.50540 -24.16623 -23.00929 -22.43476 -19.38753 -19.04427 -18.35569 -17.14907 -16.65933 -15.93278 -15.68734 -15.22682 -14.91644 -14.42388 -14.25012 -14.02408 -13.79146 -13.53505 -13.34954 -13.12709 -12.76159 -12.70096 -12.19964 -11.69451 -11.56739 -11.45084 -11.20194 -10.98832 -10.16988 -9.83549 -9.69908 -8.71213 -7.95843 -6.25748 0.58355 1.11302 1.38091 1.42277 1.52822 1.97253 2.19209 2.83289 2.86283 3.83091 3.97477 4.05968 4.23919 4.36379 4.53624 4.55619 4.69951 4.85343 4.87662 4.99127 5.00186 5.10853 5.20530 5.25907 5.40948 5.42030 5.48148 5.81229 5.92117 5.99965 6.16907 6.51825 6.67336 6.77503 6.88034 7.16698 7.82268 8.25293 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063765 B = 0.005619 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.006221 B = 4981.678414 C = 5312.436005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.034 3.966 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.481 4.481 8 H 0.083 0.917 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.155 4.155 12 C 0.042 3.958 13 C -0.206 4.206 14 C 0.126 3.874 15 N -0.739 5.739 16 C 0.121 3.879 17 C -0.131 4.131 18 C -0.046 4.046 19 N -0.479 5.479 20 C -0.041 4.041 21 H 0.292 0.708 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.134 0.866 25 H 0.411 0.589 26 H 0.055 0.945 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 -8.664 -5.041 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.510 4.510 8 H 0.101 0.899 9 C 0.023 3.977 10 C -0.176 4.176 11 C -0.175 4.175 12 C -0.095 4.095 13 C -0.216 4.216 14 C 0.001 3.999 15 N -0.369 5.369 16 C -0.004 4.004 17 C -0.170 4.170 18 C -0.083 4.083 19 N -0.187 5.187 20 C -0.202 4.202 21 H 0.103 0.897 22 H 0.133 0.867 23 H 0.144 0.856 24 H 0.151 0.849 25 H 0.247 0.753 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.906 -9.442 -4.706 11.635 hybrid contribution -0.077 1.930 -0.122 1.935 sum -4.983 -7.513 -4.828 10.226 Atomic orbital electron populations 1.69882 1.09166 1.31018 1.34543 1.26860 0.95535 1.04778 0.90977 0.85090 0.79032 0.75293 0.79638 1.18536 1.19076 1.18037 1.19724 0.98560 0.92112 1.40592 0.89920 1.18858 0.93335 0.94392 0.91093 1.21327 0.98931 0.97443 0.99882 1.21656 1.00693 0.93075 1.02038 1.19535 0.95384 0.92711 1.01859 1.19095 1.02382 0.92435 1.07711 1.20749 0.93617 0.90847 0.94693 1.44028 1.20627 1.03466 1.68814 1.21653 0.97701 0.85552 0.95448 1.21877 0.98428 0.98630 0.98027 1.19768 0.97116 0.91956 0.99503 1.67235 1.08236 1.31443 1.11817 1.22593 1.03445 0.88344 1.05822 0.89730 0.86724 0.85578 0.84873 0.75295 0.92722 0.87428 0.89111 0.92335 0.93625 0.93654 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.52 10.93 21.82 0.24 -42.28 16 2 C 0.03 1.71 5.16 85.23 0.44 2.15 16 3 Si 0.99 37.55 29.59 68.60 2.03 39.58 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.48 -26.10 9.05 23.31 0.21 -25.89 16 8 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 9 C 0.03 1.55 5.59 -21.15 -0.12 1.44 16 10 C -0.15 -8.13 8.72 22.61 0.20 -7.93 16 11 C -0.15 -7.52 9.32 22.37 0.21 -7.31 16 12 C 0.04 2.08 6.72 41.60 0.28 2.36 16 13 C -0.21 -8.17 5.86 -18.82 -0.11 -8.28 16 14 C 0.13 4.02 10.33 82.86 0.86 4.88 16 15 N -0.74 -17.06 5.76 -345.25 -1.99 -19.05 16 16 C 0.12 2.43 7.13 86.46 0.62 3.05 16 17 C -0.13 -3.26 6.17 30.77 0.19 -3.07 16 18 C -0.05 -1.63 5.48 29.72 0.16 -1.46 16 19 N -0.48 -25.33 9.45 -183.28 -1.73 -27.06 16 20 C -0.04 -2.23 10.97 85.48 0.94 -1.30 16 21 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 22 H 0.11 6.29 6.20 -2.91 -0.02 6.27 16 23 H 0.13 5.18 5.97 -2.91 -0.02 5.16 16 24 H 0.13 4.09 5.76 -2.91 -0.02 4.07 16 25 H 0.41 6.89 8.96 -92.71 -0.83 6.06 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 32 H 0.13 6.60 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -65.10 267.18 2.73 -62.37 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.31 Total: 27.81 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.87 Total: -41.37 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.48 Total: -88.39 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -65.10 2.73 -62.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243947329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.250 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds