Wall clock time and date at job start Sun Mar 29 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 119.99712 * 2 1 4 4 H 1.48502 * 109.47274 * 270.27731 * 3 2 1 5 5 H 1.48504 * 109.47383 * 30.27404 * 3 2 1 6 6 H 1.48502 * 109.47297 * 150.27366 * 3 2 1 7 7 C 1.39945 * 120.00305 * 180.27521 * 2 1 3 8 8 H 1.07999 * 120.00048 * 179.72721 * 7 2 1 9 9 C 1.40656 * 119.99980 * 359.72387 * 7 2 1 10 10 C 1.41081 * 119.62828 * 179.97438 * 9 7 2 11 11 C 1.36318 * 119.32527 * 179.97438 * 10 9 7 12 12 C 1.40900 * 118.57339 * 0.02562 * 11 10 9 13 13 C 1.46536 * 120.39075 * 179.97438 * 12 11 10 14 14 C 1.34071 * 118.74326 * 64.73675 * 13 12 11 15 15 N 1.37428 * 121.64553 * 180.30420 * 14 13 12 16 16 C 1.46972 * 119.05938 * 346.68395 * 15 14 13 17 17 C 1.53493 * 107.82722 * 44.11596 * 16 15 14 18 18 C 1.50266 * 118.74185 * 244.99717 * 13 12 11 19 19 C 1.40667 * 119.21227 * 359.97438 * 12 11 10 20 20 N 1.31059 * 120.59925 * 359.73924 * 19 12 11 21 21 H 0.97000 * 120.00484 * 359.72733 * 1 2 3 22 22 H 1.07997 * 120.33645 * 359.96268 * 10 9 7 23 23 H 1.07992 * 120.71369 * 180.02562 * 11 10 9 24 24 H 1.07996 * 119.17377 * 0.56746 * 14 13 12 25 25 H 0.96998 * 120.44344 * 166.44810 * 15 14 13 26 26 H 1.08998 * 109.78618 * 284.53418 * 16 15 14 27 27 H 1.08994 * 109.78971 * 163.70363 * 16 15 14 28 28 H 1.09003 * 109.61462 * 178.76185 * 17 16 15 29 29 H 1.09007 * 109.75083 * 58.33569 * 17 16 15 30 30 H 1.08995 * 109.35507 * 280.28535 * 18 13 12 31 31 H 1.09002 * 109.35013 * 39.83967 * 18 13 12 32 32 H 1.08002 * 119.70136 * 180.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4838 2.0499 -1.4001 5 1 1.4425 2.6510 0.7058 6 1 3.5426 1.4386 0.6942 7 6 2.0080 -1.2119 -0.0058 8 1 3.0880 -1.2118 -0.0103 9 6 1.3048 -2.4301 -0.0058 10 6 2.0182 -3.6472 -0.0122 11 6 1.3304 -4.8242 -0.0117 12 6 -0.0779 -4.7817 -0.0051 13 6 -0.8570 -6.0228 -0.0048 14 6 -0.7700 -6.8384 1.0557 15 7 -1.4695 -8.0198 1.1161 16 6 -2.5473 -8.2616 0.1467 17 6 -2.0404 -7.8313 -1.2367 18 6 -1.7182 -6.3357 -1.1958 19 6 -0.7271 -3.5339 0.0011 20 7 -0.0342 -2.4214 0.0060 21 1 -0.4851 0.8400 0.0040 22 1 3.0982 -3.6465 -0.0178 23 1 1.8538 -5.7688 -0.0161 24 1 -0.1377 -6.5579 1.8851 25 1 -1.2523 -8.6858 1.7870 26 1 -3.4252 -7.6747 0.4169 27 1 -2.8010 -9.3215 0.1335 28 1 -2.8116 -8.0191 -1.9838 29 1 -1.1410 -8.3925 -1.4904 30 1 -2.6463 -5.7681 -1.1295 31 1 -1.1901 -6.0549 -2.1071 32 1 -1.8063 -3.4921 0.0065 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243949767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:06 Heat of formation + Delta-G solvation = 21.366263 kcal Electronic energy + Delta-G solvation = -15174.079969 eV Core-core repulsion = 12712.175709 eV Total energy + Delta-G solvation = -2461.904260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24374 -39.07895 -35.60626 -33.62553 -32.82508 -32.26805 -30.36999 -27.28218 -25.22769 -23.94977 -23.35942 -22.36871 -19.35676 -18.90023 -18.21965 -17.41276 -16.11618 -15.86936 -15.55389 -15.34738 -15.17856 -14.31911 -14.11533 -13.89023 -13.82310 -13.53992 -13.14622 -12.82955 -12.71053 -12.55484 -12.29754 -11.79715 -11.59277 -11.39937 -11.14938 -10.95211 -10.11313 -9.49604 -9.35536 -8.29223 -7.89752 -6.42096 0.85421 1.25773 1.40474 1.50313 1.55610 1.81777 2.23707 2.84968 2.95005 3.95606 4.09938 4.21091 4.25403 4.30953 4.46158 4.58749 4.74482 4.85315 4.94585 4.96284 5.01814 5.04481 5.16501 5.26115 5.41060 5.51165 5.60742 5.75211 6.00209 6.04921 6.18862 6.36191 6.74094 6.79312 7.02594 7.20707 8.24786 8.47116 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062969 B = 0.005548 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.555909 B = 5045.292530 C = 5221.397294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.021 3.979 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.088 0.912 9 C 0.217 3.783 10 C -0.289 4.289 11 C -0.050 4.050 12 C -0.216 4.216 13 C -0.201 4.201 14 C 0.123 3.877 15 N -0.747 5.747 16 C 0.122 3.878 17 C -0.129 4.129 18 C -0.057 4.057 19 C 0.112 3.888 20 N -0.522 5.522 21 H 0.278 0.722 22 H 0.106 0.894 23 H 0.120 0.880 24 H 0.119 0.881 25 H 0.407 0.593 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -12.046 0.520 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.200 4.200 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.092 3.908 10 C -0.311 4.311 11 C -0.074 4.074 12 C -0.222 4.222 13 C -0.212 4.212 14 C 0.001 3.999 15 N -0.378 5.378 16 C -0.003 4.003 17 C -0.167 4.167 18 C -0.095 4.095 19 C -0.053 4.053 20 N -0.235 5.235 21 H 0.089 0.911 22 H 0.124 0.876 23 H 0.138 0.862 24 H 0.136 0.864 25 H 0.242 0.758 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.143 -11.099 0.442 11.855 hybrid contribution 0.913 -0.013 0.179 0.931 sum -3.230 -11.112 0.620 11.589 Atomic orbital electron populations 1.70302 1.08990 1.28996 1.29713 1.27047 0.95730 1.04702 0.92508 0.85109 0.78970 0.75516 0.79465 1.18691 1.19202 1.17782 1.19863 0.94839 0.90720 1.44509 0.89373 1.19050 0.88905 0.93329 0.89548 1.21554 0.99286 0.93889 1.16399 1.21066 0.93626 0.96682 0.96050 1.19254 0.92798 0.93512 1.16594 1.19100 1.07963 0.97076 0.97058 1.20693 0.95706 0.87571 0.95948 1.44042 1.38079 1.17998 1.37656 1.21603 0.89120 1.01750 0.87791 1.21829 1.01752 0.94939 0.98179 1.20014 0.97436 0.96578 0.95428 1.23119 0.98732 0.88728 0.94686 1.68664 1.07612 1.28412 1.18827 0.91143 0.87574 0.86245 0.86377 0.75755 0.93050 0.87797 0.89268 0.92111 0.93118 0.93801 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.81 11.43 21.83 0.25 -42.56 16 2 C 0.02 1.13 5.49 85.26 0.47 1.60 16 3 Si 0.99 39.36 29.56 68.60 2.03 41.38 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.47 -26.55 9.09 23.27 0.21 -26.34 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.22 12.67 6.54 40.11 0.26 12.93 16 10 C -0.29 -14.93 9.75 22.52 0.22 -14.71 16 11 C -0.05 -2.32 9.77 22.47 0.22 -2.10 16 12 C -0.22 -9.91 5.23 -19.87 -0.10 -10.02 16 13 C -0.20 -7.42 5.32 -18.79 -0.10 -7.52 16 14 C 0.12 3.83 10.51 82.87 0.87 4.70 16 15 N -0.75 -17.00 5.76 -345.15 -1.99 -18.99 16 16 C 0.12 2.38 7.13 86.45 0.62 2.99 16 17 C -0.13 -2.94 6.17 30.77 0.19 -2.75 16 18 C -0.06 -1.84 5.81 29.73 0.17 -1.66 16 19 C 0.11 5.85 10.94 85.40 0.93 6.78 16 20 N -0.52 -31.00 7.81 -187.85 -1.47 -32.46 16 21 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 22 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 23 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 24 H 0.12 3.75 8.02 -2.91 -0.02 3.72 16 25 H 0.41 6.94 8.96 -92.71 -0.83 6.11 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.12 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -67.54 273.77 3.07 -64.46 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.29 Total: 24.25 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.96 Total: -36.08 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.21 Total: -94.01 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Total: -67.54 3.07 -64.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243949767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.831 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds