Wall clock time and date at job start Sun Mar 29 2020 21:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46941 * 240.00183 * 3 2 1 5 5 H 1.48502 * 109.47472 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47137 * 120.00258 * 3 2 1 7 7 C 1.40033 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 163.14863 * 7 2 1 9 9 C 1.41551 * 120.00415 * 343.14718 * 7 2 1 10 10 C 1.41248 * 120.96158 * 336.07234 * 9 7 2 11 11 C 1.37621 * 119.16497 * 180.02562 * 10 9 7 12 12 N 1.31979 * 121.21707 * 359.72775 * 11 10 9 13 13 C 1.33081 * 122.14564 * 0.56416 * 12 11 10 14 14 C 1.47303 * 119.66379 * 179.70545 * 13 12 11 15 15 C 1.33081 * 118.68060 * 179.71296 * 14 13 12 16 16 N 1.37997 * 121.71094 * 180.39137 * 15 14 13 17 17 C 1.46996 * 118.95817 * 346.45326 * 16 15 14 18 18 C 1.53515 * 107.76091 * 44.09906 * 17 16 15 19 19 C 1.50255 * 118.67397 * 359.73584 * 14 13 12 20 20 C 1.39417 * 120.66983 * 359.43891 * 13 12 11 21 21 H 0.97004 * 119.99888 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.41523 * 0.04895 * 10 9 7 23 23 H 1.08007 * 119.38743 * 180.02562 * 11 10 9 24 24 H 1.08004 * 119.13693 * 0.38962 * 15 14 13 25 25 H 0.97003 * 120.51771 * 166.46655 * 16 15 14 26 26 H 1.09008 * 109.79691 * 284.54003 * 17 16 15 27 27 H 1.08995 * 109.80210 * 163.67075 * 17 16 15 28 28 H 1.09003 * 109.61304 * 178.91854 * 18 17 16 29 29 H 1.08997 * 109.75692 * 58.48030 * 18 17 16 30 30 H 1.08998 * 109.34107 * 39.85578 * 19 14 13 31 31 H 1.09002 * 109.33834 * 280.32551 * 19 14 13 32 32 H 1.08002 * 120.63346 * 180.28980 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0527 -1.2327 -0.2717 9 6 1.3454 -2.4125 0.3543 10 6 0.1906 -2.3920 1.1674 11 6 -0.4235 -3.5805 1.4902 12 7 0.0438 -4.7336 1.0499 13 6 1.1307 -4.8119 0.2859 14 6 1.6082 -6.1287 -0.1697 15 6 2.6936 -6.1838 -0.9377 16 7 3.1907 -7.3829 -1.4062 17 6 2.6991 -8.6363 -0.8162 18 6 1.1738 -8.5244 -0.6826 19 6 0.8498 -7.3557 0.2509 20 6 1.8187 -3.6597 -0.0921 21 1 -0.4850 0.8401 0.0004 22 1 -0.2056 -1.4554 1.5309 23 1 -1.3070 -3.5690 2.1114 24 1 3.1986 -5.2661 -1.2011 25 1 3.8542 -7.3984 -2.1136 26 1 3.1461 -8.7816 0.1674 27 1 2.9525 -9.4743 -1.4653 28 1 0.7744 -9.4483 -0.2644 29 1 0.7305 -8.3443 -1.6619 30 1 -0.2198 -7.1496 0.2133 31 1 1.1286 -7.6204 1.2709 32 1 2.6980 -3.7236 -0.7160 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243950204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:38 Heat of formation + Delta-G solvation = 31.195964 kcal Electronic energy + Delta-G solvation = -15229.285858 eV Core-core repulsion = 12767.807845 eV Total energy + Delta-G solvation = -2461.478012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.80746 -37.52899 -34.08784 -32.09925 -31.65897 -30.52146 -27.99951 -25.91726 -24.02715 -23.05370 -20.95351 -20.85108 -18.16361 -17.23892 -16.55024 -15.30019 -14.68358 -14.51228 -14.16573 -13.69952 -13.50379 -12.95475 -12.81328 -12.52667 -12.28172 -12.24309 -11.60908 -11.28016 -11.16071 -10.83729 -10.48524 -10.34038 -10.13044 -9.84997 -9.66712 -9.32698 -8.00428 -7.92876 -7.80478 -6.79196 -6.33929 -4.51969 2.36585 2.83503 3.04361 3.06993 3.23439 3.70570 3.89828 3.90881 4.77019 5.09703 5.27206 5.35702 5.59089 5.76576 5.84389 5.92800 5.98047 6.10015 6.37327 6.52408 6.63336 6.67157 6.90350 6.97026 7.01827 7.22637 7.23334 7.50519 7.63638 7.85660 7.96095 8.17859 8.27380 8.55624 8.83125 8.85437 9.76088 10.14383 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044139 B = 0.006229 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.212584 B = 4493.915861 C = 5022.327432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.131 3.869 10 C -0.219 4.219 11 C 0.086 3.914 12 N -0.569 5.569 13 C 0.184 3.816 14 C -0.176 4.176 15 C 0.115 3.885 16 N -0.754 5.754 17 C 0.123 3.877 18 C -0.139 4.139 19 C -0.049 4.049 20 C -0.276 4.276 21 H 0.282 0.718 22 H 0.123 0.877 23 H 0.118 0.882 24 H 0.135 0.865 25 H 0.395 0.605 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -8.898 -1.921 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.124 3.876 10 C -0.242 4.242 11 C -0.066 4.066 12 N -0.285 5.285 13 C 0.049 3.951 14 C -0.185 4.185 15 C -0.006 4.006 16 N -0.385 5.385 17 C -0.002 4.002 18 C -0.177 4.177 19 C -0.087 4.087 20 C -0.299 4.299 21 H 0.093 0.907 22 H 0.141 0.859 23 H 0.135 0.865 24 H 0.152 0.848 25 H 0.228 0.772 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.352 -9.616 -1.595 10.308 hybrid contribution 0.964 1.784 -0.519 2.093 sum 4.316 -7.832 -2.115 9.189 Atomic orbital electron populations 1.69782 1.07681 1.29456 1.34500 1.25940 0.94728 1.01389 0.91990 0.86335 0.80131 0.80047 0.80015 1.18956 1.20262 1.18762 1.19536 0.97761 0.90906 1.41019 0.90322 1.17724 0.90584 0.92034 0.87306 1.22171 1.00648 0.98030 1.03370 1.21927 0.97977 0.88769 0.97910 1.67497 1.15084 1.28604 1.17304 1.19118 0.91434 0.90887 0.93619 1.19205 0.97831 0.93301 1.08209 1.20793 0.94435 0.88560 0.96856 1.44138 1.47870 1.03617 1.42867 1.21477 0.94631 0.86290 0.97845 1.21926 0.95746 0.99148 1.00892 1.19844 1.00536 0.91046 0.97250 1.21849 1.05114 0.93126 1.09806 0.90690 0.85928 0.86493 0.84785 0.77191 0.92894 0.91421 0.91565 0.91803 0.90634 0.92569 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.41 10.92 55.55 0.61 -19.81 16 2 C 0.08 1.97 5.20 -17.34 -0.09 1.88 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.28 9.11 -37.65 -0.34 -12.63 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.59 5.60 -106.57 -0.60 2.99 16 10 C -0.22 -5.88 8.79 -38.66 -0.34 -6.22 16 11 C 0.09 2.16 11.14 -17.71 -0.20 1.96 16 12 N -0.57 -14.34 9.47 -10.09 -0.10 -14.43 16 13 C 0.18 4.47 6.72 -83.20 -0.56 3.91 16 14 C -0.18 -3.53 5.85 -102.95 -0.60 -4.13 16 15 C 0.11 1.99 10.33 -16.57 -0.17 1.82 16 16 N -0.75 -10.12 5.79 -60.50 -0.35 -10.47 16 17 C 0.12 1.47 7.14 -3.50 -0.03 1.44 16 18 C -0.14 -1.87 6.17 -26.44 -0.16 -2.03 16 19 C -0.05 -0.87 5.49 -28.08 -0.15 -1.02 16 20 C -0.28 -6.97 9.18 -38.22 -0.35 -7.32 16 21 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 22 H 0.12 3.32 6.20 -52.49 -0.33 3.00 16 23 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 24 H 0.13 2.32 5.77 -52.48 -0.30 2.01 16 25 H 0.39 4.21 8.96 -40.82 -0.37 3.84 16 26 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.44 7.80 -51.93 -0.41 1.04 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 2.28 6.01 -52.49 -0.32 1.97 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -29.55 267.51 -8.23 -37.78 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.80 Total: 8.75 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.59 Total: -19.35 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.16 Total: -44.71 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.55 -8.23 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243950204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.974 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds