Wall clock time and date at job start Sun Mar 29 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46941 * 240.00183 * 3 2 1 5 5 H 1.48502 * 109.47472 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47137 * 120.00258 * 3 2 1 7 7 C 1.40033 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 163.14863 * 7 2 1 9 9 C 1.41551 * 120.00415 * 343.14718 * 7 2 1 10 10 C 1.41248 * 120.96158 * 336.07234 * 9 7 2 11 11 C 1.37621 * 119.16497 * 180.02562 * 10 9 7 12 12 N 1.31979 * 121.21707 * 359.72775 * 11 10 9 13 13 C 1.33081 * 122.14564 * 0.56416 * 12 11 10 14 14 C 1.47303 * 119.66379 * 179.70545 * 13 12 11 15 15 C 1.33081 * 118.68060 * 179.71296 * 14 13 12 16 16 N 1.37997 * 121.71094 * 180.39137 * 15 14 13 17 17 C 1.46996 * 118.95817 * 346.45326 * 16 15 14 18 18 C 1.53515 * 107.76091 * 44.09906 * 17 16 15 19 19 C 1.50255 * 118.67397 * 359.73584 * 14 13 12 20 20 C 1.39417 * 120.66983 * 359.43891 * 13 12 11 21 21 H 0.97004 * 119.99888 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.41523 * 0.04895 * 10 9 7 23 23 H 1.08007 * 119.38743 * 180.02562 * 11 10 9 24 24 H 1.08004 * 119.13693 * 0.38962 * 15 14 13 25 25 H 0.97003 * 120.51771 * 166.46655 * 16 15 14 26 26 H 1.09008 * 109.79691 * 284.54003 * 17 16 15 27 27 H 1.08995 * 109.80210 * 163.67075 * 17 16 15 28 28 H 1.09003 * 109.61304 * 178.91854 * 18 17 16 29 29 H 1.08997 * 109.75692 * 58.48030 * 18 17 16 30 30 H 1.08998 * 109.34107 * 39.85578 * 19 14 13 31 31 H 1.09002 * 109.33834 * 280.32551 * 19 14 13 32 32 H 1.08002 * 120.63346 * 180.28980 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0527 -1.2327 -0.2717 9 6 1.3454 -2.4125 0.3543 10 6 0.1906 -2.3920 1.1674 11 6 -0.4235 -3.5805 1.4902 12 7 0.0438 -4.7336 1.0499 13 6 1.1307 -4.8119 0.2859 14 6 1.6082 -6.1287 -0.1697 15 6 2.6936 -6.1838 -0.9377 16 7 3.1907 -7.3829 -1.4062 17 6 2.6991 -8.6363 -0.8162 18 6 1.1738 -8.5244 -0.6826 19 6 0.8498 -7.3557 0.2509 20 6 1.8187 -3.6597 -0.0921 21 1 -0.4850 0.8401 0.0004 22 1 -0.2056 -1.4554 1.5309 23 1 -1.3070 -3.5690 2.1114 24 1 3.1986 -5.2661 -1.2011 25 1 3.8542 -7.3984 -2.1136 26 1 3.1461 -8.7816 0.1674 27 1 2.9525 -9.4743 -1.4653 28 1 0.7744 -9.4483 -0.2644 29 1 0.7305 -8.3443 -1.6619 30 1 -0.2198 -7.1496 0.2133 31 1 1.1286 -7.6204 1.2709 32 1 2.6980 -3.7236 -0.7160 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243950204.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:37 Heat of formation + Delta-G solvation = 12.941123 kcal Electronic energy + Delta-G solvation = -15230.077447 eV Core-core repulsion = 12767.807845 eV Total energy + Delta-G solvation = -2462.269602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42311 -39.08556 -35.98785 -33.58880 -33.04730 -32.38877 -29.67053 -27.84031 -25.39106 -24.55855 -22.74973 -22.49073 -19.80802 -18.60748 -18.17159 -17.07858 -16.43777 -16.10680 -15.75586 -15.24665 -14.95682 -14.45330 -14.29746 -14.04450 -13.90674 -13.74702 -13.30268 -12.94569 -12.73269 -12.64982 -11.99511 -11.75371 -11.59789 -11.44892 -11.19663 -11.06735 -9.94272 -9.77048 -9.70434 -8.68033 -7.85093 -6.53803 0.62030 0.99383 1.37916 1.50146 1.53544 1.99122 2.19127 2.75909 2.86297 3.83914 3.91452 4.02705 4.22335 4.32195 4.49098 4.58374 4.75306 4.86735 4.94149 5.00557 5.04053 5.14393 5.17175 5.27634 5.38606 5.44487 5.57529 5.60699 5.92285 5.97850 6.22132 6.51691 6.65616 6.84627 6.88418 7.07933 7.82717 8.27836 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044139 B = 0.006229 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.212584 B = 4493.915861 C = 5022.327432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.103 3.897 10 C -0.249 4.249 11 C 0.083 3.917 12 N -0.584 5.584 13 C 0.185 3.815 14 C -0.229 4.229 15 C 0.155 3.845 16 N -0.738 5.738 17 C 0.119 3.881 18 C -0.132 4.132 19 C -0.044 4.044 20 C -0.301 4.301 21 H 0.291 0.709 22 H 0.111 0.889 23 H 0.140 0.860 24 H 0.134 0.866 25 H 0.413 0.587 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -10.038 -2.951 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.272 4.272 11 C -0.069 4.069 12 N -0.300 5.300 13 C 0.051 3.949 14 C -0.240 4.240 15 C 0.029 3.971 16 N -0.367 5.367 17 C -0.005 4.005 18 C -0.170 4.170 19 C -0.081 4.081 20 C -0.324 4.324 21 H 0.102 0.898 22 H 0.129 0.871 23 H 0.158 0.842 24 H 0.151 0.849 25 H 0.249 0.751 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.980 -10.813 -2.655 12.197 hybrid contribution 0.518 1.994 -0.270 2.078 sum 5.497 -8.819 -2.924 10.796 Atomic orbital electron populations 1.69842 1.09291 1.30996 1.34306 1.26887 0.95511 1.04814 0.90750 0.85154 0.78714 0.75032 0.80203 1.18036 1.19024 1.18417 1.19847 0.98170 0.91922 1.42422 0.89987 1.18157 0.91175 0.93356 0.87775 1.22133 1.01778 0.98100 1.05167 1.22296 0.98399 0.88507 0.97659 1.67628 1.15900 1.28268 1.18209 1.19771 0.90423 0.92717 0.91992 1.19217 1.00479 0.92352 1.11960 1.20816 0.92482 0.90093 0.93666 1.44310 1.47054 1.03045 1.42331 1.21726 0.93296 0.86397 0.99115 1.21892 0.97106 0.98364 0.99609 1.19760 0.98555 0.91813 0.97992 1.22047 1.06251 0.93025 1.11049 0.89809 0.87113 0.84247 0.84913 0.75073 0.92449 0.87186 0.88818 0.92264 0.93301 0.93366 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.33 10.92 21.84 0.24 -43.09 16 2 C 0.04 1.87 5.20 85.29 0.44 2.31 16 3 Si 0.99 37.88 29.59 68.60 2.03 39.91 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.49 -27.00 9.11 23.52 0.21 -26.79 16 8 H 0.08 4.26 7.90 -2.91 -0.02 4.23 16 9 C 0.10 5.85 5.60 -21.13 -0.12 5.73 16 10 C -0.25 -13.95 8.79 22.86 0.20 -13.74 16 11 C 0.08 4.34 11.14 84.52 0.94 5.28 16 12 N -0.58 -30.35 9.47 -185.82 -1.76 -32.10 16 13 C 0.19 9.22 6.72 41.62 0.28 9.50 16 14 C -0.23 -9.16 5.85 -18.77 -0.11 -9.27 16 15 C 0.15 5.08 10.33 82.57 0.85 5.93 16 16 N -0.74 -17.06 5.79 -345.33 -2.00 -19.06 16 17 C 0.12 2.32 7.14 86.46 0.62 2.94 16 18 C -0.13 -3.16 6.17 30.78 0.19 -2.97 16 19 C -0.04 -1.51 5.49 29.72 0.16 -1.35 16 20 C -0.30 -15.69 9.18 23.15 0.21 -15.47 16 21 H 0.29 13.83 8.29 -92.71 -0.77 13.06 16 22 H 0.11 6.32 6.20 -2.91 -0.02 6.31 16 23 H 0.14 6.37 8.06 -2.91 -0.02 6.34 16 24 H 0.13 4.40 5.77 -2.91 -0.02 4.38 16 25 H 0.41 6.98 8.96 -92.71 -0.83 6.15 16 26 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 5.32 6.01 -2.91 -0.02 5.30 16 Total: -1.00 -66.58 267.51 2.71 -63.88 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.31 Total: 28.36 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.89 Total: -37.89 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.52 Total: -94.26 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -66.58 2.71 -63.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243950204.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.820 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds