Wall clock time and date at job start Sun Mar 29 2020 21:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46881 * 85.09512 * 3 2 1 5 5 H 1.48495 * 109.46913 * 205.09370 * 3 2 1 6 6 H 1.48504 * 109.47134 * 325.09915 * 3 2 1 7 7 C 1.40017 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00183 * 187.22343 * 7 2 1 9 9 C 1.41459 * 119.99784 * 7.23245 * 7 2 1 10 10 C 1.40316 * 119.76505 * 186.92748 * 9 7 2 11 11 C 1.39801 * 118.78242 * 179.75680 * 10 9 7 12 12 C 1.47348 * 120.86078 * 180.25418 * 11 10 9 13 13 C 1.33055 * 118.67794 * 294.98902 * 12 11 10 14 14 N 1.38039 * 121.70733 * 180.13035 * 13 12 11 15 15 C 1.46994 * 119.00186 * 346.95209 * 14 13 12 16 16 C 1.53518 * 107.76164 * 43.85851 * 15 14 13 17 17 C 1.50248 * 118.66893 * 115.25336 * 12 11 10 18 18 C 1.40427 * 118.27537 * 0.50582 * 11 10 9 19 19 C 1.38277 * 119.38792 * 359.72660 * 18 11 10 20 20 N 1.31576 * 121.20318 * 0.03042 * 19 18 11 21 21 H 0.97008 * 119.99723 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.60823 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.14903 * 0.38701 * 13 12 11 24 24 H 0.97001 * 120.47362 * 166.71772 * 14 13 12 25 25 H 1.09001 * 109.79903 * 284.30152 * 15 14 13 26 26 H 1.08994 * 109.80857 * 163.42818 * 15 14 13 27 27 H 1.09004 * 109.61522 * 178.91448 * 16 15 14 28 28 H 1.09005 * 109.75584 * 58.47585 * 16 15 14 29 29 H 1.09000 * 109.34355 * 280.31837 * 17 12 11 30 30 H 1.08996 * 109.34419 * 39.85513 * 17 12 11 31 31 H 1.08003 * 120.30143 * 179.75457 * 18 11 10 32 32 H 1.08006 * 119.39817 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3854 2.1062 1.3950 5 1 3.5870 1.4124 -0.5938 6 1 1.4946 2.6206 -0.8011 7 6 2.0076 -1.2126 0.0005 8 1 3.0811 -1.2163 0.1181 9 6 1.3087 -2.4328 -0.1531 10 6 1.9914 -3.6499 -0.0067 11 6 1.2795 -4.8435 -0.1579 12 6 1.9495 -6.1473 -0.0083 13 6 2.8911 -6.4856 -0.8855 14 7 3.5567 -7.6923 -0.8060 15 6 3.4333 -8.4950 0.4192 16 6 1.9561 -8.4873 0.8373 17 6 1.5376 -7.0436 1.1250 18 6 -0.0895 -4.7677 -0.4612 19 6 -0.6874 -3.5279 -0.5942 20 7 0.0031 -2.4183 -0.4423 21 1 -0.4850 0.8401 -0.0004 22 1 3.0469 -3.6643 0.2221 23 1 3.1440 -5.7966 -1.6777 24 1 4.0949 -8.0071 -1.5491 25 1 4.0430 -8.0579 1.2100 26 1 3.7567 -9.5176 0.2250 27 1 1.8268 -9.0917 1.7352 28 1 1.3432 -8.8925 0.0321 29 1 2.0154 -6.7057 2.0445 30 1 0.4552 -6.9989 1.2456 31 1 -0.6701 -5.6694 -0.5889 32 1 -1.7403 -3.4694 -0.8279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243950957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:25 Heat of formation + Delta-G solvation = 39.000973 kcal Electronic energy + Delta-G solvation = -15197.885052 eV Core-core repulsion = 12736.745490 eV Total energy + Delta-G solvation = -2461.139562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.74330 -37.52657 -33.65660 -32.44362 -31.66141 -29.83616 -28.54965 -25.57921 -24.17149 -22.93646 -21.19526 -20.82164 -18.15042 -17.22187 -16.46089 -15.29878 -14.49138 -14.42743 -14.29610 -13.84118 -13.73803 -13.05877 -12.81893 -12.50777 -12.26293 -11.87855 -11.55032 -11.16879 -11.12669 -10.71256 -10.56404 -10.46635 -10.20309 -9.97938 -9.67823 -9.22237 -8.02138 -7.52694 -7.41443 -6.76193 -6.34443 -4.39903 2.72082 2.87486 3.13861 3.17391 3.22469 3.35660 3.89160 4.01969 4.83692 5.01074 5.16823 5.29765 5.58569 5.70914 5.86257 5.96325 6.04233 6.15393 6.21948 6.30993 6.45172 6.58996 6.80931 6.88935 7.01043 7.05314 7.25008 7.49184 7.69403 7.83011 7.90793 8.15046 8.21711 8.34809 8.78739 9.04481 10.23569 10.42651 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043697 B = 0.006097 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.619288 B = 4591.176854 C = 4994.321060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.276 1.276 7 C -0.441 4.441 8 H 0.081 0.919 9 C 0.259 3.741 10 C -0.265 4.265 11 C 0.027 3.973 12 C -0.188 4.188 13 C 0.114 3.886 14 N -0.758 5.758 15 C 0.124 3.876 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.304 4.304 19 C 0.120 3.880 20 N -0.492 5.492 21 H 0.272 0.728 22 H 0.096 0.904 23 H 0.126 0.874 24 H 0.394 0.606 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -11.169 0.136 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.151 4.151 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.186 1.186 6 H -0.201 1.201 7 C -0.472 4.472 8 H 0.099 0.901 9 C 0.134 3.866 10 C -0.287 4.287 11 C 0.020 3.980 12 C -0.197 4.197 13 C -0.005 4.005 14 N -0.390 5.390 15 C -0.001 4.001 16 C -0.174 4.174 17 C -0.095 4.095 18 C -0.328 4.328 19 C -0.045 4.045 20 N -0.205 5.205 21 H 0.083 0.917 22 H 0.114 0.886 23 H 0.144 0.856 24 H 0.227 0.773 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.025 -10.236 0.200 11.001 hybrid contribution 0.914 -0.189 -0.154 0.946 sum 4.939 -10.426 0.046 11.536 Atomic orbital electron populations 1.70089 1.07233 1.27660 1.29522 1.26013 0.94788 1.00892 0.93417 0.86384 0.80645 0.81229 0.78923 1.19617 1.18567 1.20113 1.19556 0.94675 0.89678 1.43336 0.90088 1.18519 0.88338 0.91758 0.87979 1.21941 0.99140 0.92632 1.15033 1.18500 0.92902 0.90905 0.95726 1.19366 1.01289 0.97140 1.01919 1.20563 0.92986 0.87364 0.99551 1.44133 1.55848 1.21014 1.17960 1.21443 0.96453 0.94480 0.87736 1.21878 0.96553 0.97835 1.01183 1.20012 1.00900 0.92059 0.96485 1.21350 0.95009 0.97399 1.19008 1.22355 0.98393 0.88899 0.94833 1.68665 1.07637 1.27297 1.16857 0.91723 0.88612 0.85628 0.77335 0.92893 0.91386 0.91485 0.91711 0.92291 0.91417 0.89113 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.96 11.56 55.55 0.64 -19.32 16 2 C 0.07 1.94 5.47 -17.35 -0.09 1.84 16 3 Si 0.90 19.15 29.57 -169.99 -5.03 14.13 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.44 -12.23 9.13 -37.69 -0.34 -12.58 16 8 H 0.08 2.11 7.86 -52.49 -0.41 1.70 16 9 C 0.26 7.35 6.52 -85.04 -0.55 6.80 16 10 C -0.26 -6.75 9.53 -38.22 -0.36 -7.11 16 11 C 0.03 0.62 5.21 -104.78 -0.55 0.07 16 12 C -0.19 -3.56 5.35 -102.94 -0.55 -4.12 16 13 C 0.11 1.92 10.50 -16.56 -0.17 1.74 16 14 N -0.76 -9.86 5.79 -60.50 -0.35 -10.21 16 15 C 0.12 1.43 7.14 -3.50 -0.03 1.40 16 16 C -0.14 -1.71 6.17 -26.44 -0.16 -1.87 16 17 C -0.06 -0.93 5.83 -28.08 -0.16 -1.10 16 18 C -0.30 -7.12 9.78 -38.74 -0.38 -7.50 16 19 C 0.12 3.03 11.16 -17.65 -0.20 2.84 16 20 N -0.49 -14.08 7.96 -11.25 -0.09 -14.17 16 21 H 0.27 6.78 8.29 -40.82 -0.34 6.44 16 22 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 23 H 0.13 2.14 8.01 -52.48 -0.42 1.72 16 24 H 0.39 4.09 8.96 -40.82 -0.37 3.72 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 31 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.11 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 274.02 15.07 4.13 4.13 Total: -1.00 -30.78 274.02 -8.38 -39.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.13 Total: 5.86 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.56 Total: -19.58 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.20 Total: -43.70 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.78 -8.38 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243950957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.158 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds