Wall clock time and date at job start Sun Mar 29 2020 21:33:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30751 * 1
3 3 Si 1.86800 * 120.00116 * 2 1
4 4 H 1.48500 * 109.46881 * 85.09512 * 3 2 1
5 5 H 1.48495 * 109.46913 * 205.09370 * 3 2 1
6 6 H 1.48504 * 109.47134 * 325.09915 * 3 2 1
7 7 C 1.40017 * 119.99907 * 179.97438 * 2 1 3
8 8 H 1.07992 * 120.00183 * 187.22343 * 7 2 1
9 9 C 1.41459 * 119.99784 * 7.23245 * 7 2 1
10 10 C 1.40316 * 119.76505 * 186.92748 * 9 7 2
11 11 C 1.39801 * 118.78242 * 179.75680 * 10 9 7
12 12 C 1.47348 * 120.86078 * 180.25418 * 11 10 9
13 13 C 1.33055 * 118.67794 * 294.98902 * 12 11 10
14 14 N 1.38039 * 121.70733 * 180.13035 * 13 12 11
15 15 C 1.46994 * 119.00186 * 346.95209 * 14 13 12
16 16 C 1.53518 * 107.76164 * 43.85851 * 15 14 13
17 17 C 1.50248 * 118.66893 * 115.25336 * 12 11 10
18 18 C 1.40427 * 118.27537 * 0.50582 * 11 10 9
19 19 C 1.38277 * 119.38792 * 359.72660 * 18 11 10
20 20 N 1.31576 * 121.20318 * 0.03042 * 19 18 11
21 21 H 0.97008 * 119.99723 * 0.02562 * 1 2 3
22 22 H 1.08005 * 120.60823 * 359.97438 * 10 9 7
23 23 H 1.08004 * 119.14903 * 0.38701 * 13 12 11
24 24 H 0.97001 * 120.47362 * 166.71772 * 14 13 12
25 25 H 1.09001 * 109.79903 * 284.30152 * 15 14 13
26 26 H 1.08994 * 109.80857 * 163.42818 * 15 14 13
27 27 H 1.09004 * 109.61522 * 178.91448 * 16 15 14
28 28 H 1.09005 * 109.75584 * 58.47585 * 16 15 14
29 29 H 1.09000 * 109.34355 * 280.31837 * 17 12 11
30 30 H 1.08996 * 109.34419 * 39.85513 * 17 12 11
31 31 H 1.08003 * 120.30143 * 179.75457 * 18 11 10
32 32 H 1.08006 * 119.39817 * 179.97438 * 19 18 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.3854 2.1062 1.3950
5 1 3.5870 1.4124 -0.5938
6 1 1.4946 2.6206 -0.8011
7 6 2.0076 -1.2126 0.0005
8 1 3.0811 -1.2163 0.1181
9 6 1.3087 -2.4328 -0.1531
10 6 1.9914 -3.6499 -0.0067
11 6 1.2795 -4.8435 -0.1579
12 6 1.9495 -6.1473 -0.0083
13 6 2.8911 -6.4856 -0.8855
14 7 3.5567 -7.6923 -0.8060
15 6 3.4333 -8.4950 0.4192
16 6 1.9561 -8.4873 0.8373
17 6 1.5376 -7.0436 1.1250
18 6 -0.0895 -4.7677 -0.4612
19 6 -0.6874 -3.5279 -0.5942
20 7 0.0031 -2.4183 -0.4423
21 1 -0.4850 0.8401 -0.0004
22 1 3.0469 -3.6643 0.2221
23 1 3.1440 -5.7966 -1.6777
24 1 4.0949 -8.0071 -1.5491
25 1 4.0430 -8.0579 1.2100
26 1 3.7567 -9.5176 0.2250
27 1 1.8268 -9.0917 1.7352
28 1 1.3432 -8.8925 0.0321
29 1 2.0154 -6.7057 2.0445
30 1 0.4552 -6.9989 1.2456
31 1 -0.6701 -5.6694 -0.5889
32 1 -1.7403 -3.4694 -0.8279
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001243950957.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:33:25
Heat of formation + Delta-G solvation = 39.000973 kcal
Electronic energy + Delta-G solvation = -15197.885052 eV
Core-core repulsion = 12736.745490 eV
Total energy + Delta-G solvation = -2461.139562 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-38.74330 -37.52657 -33.65660 -32.44362 -31.66141 -29.83616 -28.54965 -25.57921
-24.17149 -22.93646 -21.19526 -20.82164 -18.15042 -17.22187 -16.46089 -15.29878
-14.49138 -14.42743 -14.29610 -13.84118 -13.73803 -13.05877 -12.81893 -12.50777
-12.26293 -11.87855 -11.55032 -11.16879 -11.12669 -10.71256 -10.56404 -10.46635
-10.20309 -9.97938 -9.67823 -9.22237 -8.02138 -7.52694 -7.41443 -6.76193
-6.34443 -4.39903 2.72082 2.87486 3.13861 3.17391 3.22469 3.35660
3.89160 4.01969 4.83692 5.01074 5.16823 5.29765 5.58569 5.70914
5.86257 5.96325 6.04233 6.15393 6.21948 6.30993 6.45172 6.58996
6.80931 6.88935 7.01043 7.05314 7.25008 7.49184 7.69403 7.83011
7.90793 8.15046 8.21711 8.34809 8.78739 9.04481 10.23569 10.42651
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.043697 B = 0.006097 C = 0.005605
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.619288 B = 4591.176854 C = 4994.321060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.723 5.723
2 C 0.073 3.927
3 Si 0.904 3.096
4 H -0.271 1.271
5 H -0.262 1.262
6 H -0.276 1.276
7 C -0.441 4.441
8 H 0.081 0.919
9 C 0.259 3.741
10 C -0.265 4.265
11 C 0.027 3.973
12 C -0.188 4.188
13 C 0.114 3.886
14 N -0.758 5.758
15 C 0.124 3.876
16 C -0.136 4.136
17 C -0.057 4.057
18 C -0.304 4.304
19 C 0.120 3.880
20 N -0.492 5.492
21 H 0.272 0.728
22 H 0.096 0.904
23 H 0.126 0.874
24 H 0.394 0.606
25 H 0.053 0.947
26 H 0.068 0.932
27 H 0.066 0.934
28 H 0.064 0.936
29 H 0.059 0.941
30 H 0.067 0.933
31 H 0.091 0.909
32 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.622 -11.169 0.136 12.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.345 5.345
2 C -0.151 4.151
3 Si 0.728 3.272
4 H -0.196 1.196
5 H -0.186 1.186
6 H -0.201 1.201
7 C -0.472 4.472
8 H 0.099 0.901
9 C 0.134 3.866
10 C -0.287 4.287
11 C 0.020 3.980
12 C -0.197 4.197
13 C -0.005 4.005
14 N -0.390 5.390
15 C -0.001 4.001
16 C -0.174 4.174
17 C -0.095 4.095
18 C -0.328 4.328
19 C -0.045 4.045
20 N -0.205 5.205
21 H 0.083 0.917
22 H 0.114 0.886
23 H 0.144 0.856
24 H 0.227 0.773
25 H 0.071 0.929
26 H 0.086 0.914
27 H 0.085 0.915
28 H 0.083 0.917
29 H 0.077 0.923
30 H 0.086 0.914
31 H 0.109 0.891
32 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 4.025 -10.236 0.200 11.001
hybrid contribution 0.914 -0.189 -0.154 0.946
sum 4.939 -10.426 0.046 11.536
Atomic orbital electron populations
1.70089 1.07233 1.27660 1.29522 1.26013 0.94788 1.00892 0.93417
0.86384 0.80645 0.81229 0.78923 1.19617 1.18567 1.20113 1.19556
0.94675 0.89678 1.43336 0.90088 1.18519 0.88338 0.91758 0.87979
1.21941 0.99140 0.92632 1.15033 1.18500 0.92902 0.90905 0.95726
1.19366 1.01289 0.97140 1.01919 1.20563 0.92986 0.87364 0.99551
1.44133 1.55848 1.21014 1.17960 1.21443 0.96453 0.94480 0.87736
1.21878 0.96553 0.97835 1.01183 1.20012 1.00900 0.92059 0.96485
1.21350 0.95009 0.97399 1.19008 1.22355 0.98393 0.88899 0.94833
1.68665 1.07637 1.27297 1.16857 0.91723 0.88612 0.85628 0.77335
0.92893 0.91386 0.91485 0.91711 0.92291 0.91417 0.89113 0.86756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.72 -19.96 11.56 55.55 0.64 -19.32 16
2 C 0.07 1.94 5.47 -17.35 -0.09 1.84 16
3 Si 0.90 19.15 29.57 -169.99 -5.03 14.13 16
4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16
5 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16
6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16
7 C -0.44 -12.23 9.13 -37.69 -0.34 -12.58 16
8 H 0.08 2.11 7.86 -52.49 -0.41 1.70 16
9 C 0.26 7.35 6.52 -85.04 -0.55 6.80 16
10 C -0.26 -6.75 9.53 -38.22 -0.36 -7.11 16
11 C 0.03 0.62 5.21 -104.78 -0.55 0.07 16
12 C -0.19 -3.56 5.35 -102.94 -0.55 -4.12 16
13 C 0.11 1.92 10.50 -16.56 -0.17 1.74 16
14 N -0.76 -9.86 5.79 -60.50 -0.35 -10.21 16
15 C 0.12 1.43 7.14 -3.50 -0.03 1.40 16
16 C -0.14 -1.71 6.17 -26.44 -0.16 -1.87 16
17 C -0.06 -0.93 5.83 -28.08 -0.16 -1.10 16
18 C -0.30 -7.12 9.78 -38.74 -0.38 -7.50 16
19 C 0.12 3.03 11.16 -17.65 -0.20 2.84 16
20 N -0.49 -14.08 7.96 -11.25 -0.09 -14.17 16
21 H 0.27 6.78 8.29 -40.82 -0.34 6.44 16
22 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16
23 H 0.13 2.14 8.01 -52.48 -0.42 1.72 16
24 H 0.39 4.09 8.96 -40.82 -0.37 3.72 16
25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16
31 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16
32 H 0.11 2.58 8.06 -52.48 -0.42 2.16 16
LS Contribution 274.02 15.07 4.13 4.13
Total: -1.00 -30.78 274.02 -8.38 -39.16
By element:
Atomic # 1 Polarization: 9.99 SS G_CDS: -4.13 Total: 5.86 kcal
Atomic # 6 Polarization: -16.02 SS G_CDS: -3.56 Total: -19.58 kcal
Atomic # 7 Polarization: -43.90 SS G_CDS: 0.20 Total: -43.70 kcal
Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -30.78 -8.38 -39.16 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243950957.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.158 kcal
(2) G-P(sol) polarization free energy of solvation -30.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds