Wall clock time and date at job start Sun Mar 29 2020 21:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46881 * 85.09512 * 3 2 1 5 5 H 1.48495 * 109.46913 * 205.09370 * 3 2 1 6 6 H 1.48504 * 109.47134 * 325.09915 * 3 2 1 7 7 C 1.40017 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00183 * 187.22343 * 7 2 1 9 9 C 1.41459 * 119.99784 * 7.23245 * 7 2 1 10 10 C 1.40316 * 119.76505 * 186.92748 * 9 7 2 11 11 C 1.39801 * 118.78242 * 179.75680 * 10 9 7 12 12 C 1.47348 * 120.86078 * 180.25418 * 11 10 9 13 13 C 1.33055 * 118.67794 * 294.98902 * 12 11 10 14 14 N 1.38039 * 121.70733 * 180.13035 * 13 12 11 15 15 C 1.46994 * 119.00186 * 346.95209 * 14 13 12 16 16 C 1.53518 * 107.76164 * 43.85851 * 15 14 13 17 17 C 1.50248 * 118.66893 * 115.25336 * 12 11 10 18 18 C 1.40427 * 118.27537 * 0.50582 * 11 10 9 19 19 C 1.38277 * 119.38792 * 359.72660 * 18 11 10 20 20 N 1.31576 * 121.20318 * 0.03042 * 19 18 11 21 21 H 0.97008 * 119.99723 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.60823 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.14903 * 0.38701 * 13 12 11 24 24 H 0.97001 * 120.47362 * 166.71772 * 14 13 12 25 25 H 1.09001 * 109.79903 * 284.30152 * 15 14 13 26 26 H 1.08994 * 109.80857 * 163.42818 * 15 14 13 27 27 H 1.09004 * 109.61522 * 178.91448 * 16 15 14 28 28 H 1.09005 * 109.75584 * 58.47585 * 16 15 14 29 29 H 1.09000 * 109.34355 * 280.31837 * 17 12 11 30 30 H 1.08996 * 109.34419 * 39.85513 * 17 12 11 31 31 H 1.08003 * 120.30143 * 179.75457 * 18 11 10 32 32 H 1.08006 * 119.39817 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3854 2.1062 1.3950 5 1 3.5870 1.4124 -0.5938 6 1 1.4946 2.6206 -0.8011 7 6 2.0076 -1.2126 0.0005 8 1 3.0811 -1.2163 0.1181 9 6 1.3087 -2.4328 -0.1531 10 6 1.9914 -3.6499 -0.0067 11 6 1.2795 -4.8435 -0.1579 12 6 1.9495 -6.1473 -0.0083 13 6 2.8911 -6.4856 -0.8855 14 7 3.5567 -7.6923 -0.8060 15 6 3.4333 -8.4950 0.4192 16 6 1.9561 -8.4873 0.8373 17 6 1.5376 -7.0436 1.1250 18 6 -0.0895 -4.7677 -0.4612 19 6 -0.6874 -3.5279 -0.5942 20 7 0.0031 -2.4183 -0.4423 21 1 -0.4850 0.8401 -0.0004 22 1 3.0469 -3.6643 0.2221 23 1 3.1440 -5.7966 -1.6777 24 1 4.0949 -8.0071 -1.5491 25 1 4.0430 -8.0579 1.2100 26 1 3.7567 -9.5176 0.2250 27 1 1.8268 -9.0917 1.7352 28 1 1.3432 -8.8925 0.0321 29 1 2.0154 -6.7057 2.0445 30 1 0.4552 -6.9989 1.2456 31 1 -0.6701 -5.6694 -0.5889 32 1 -1.7403 -3.4694 -0.8279 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243950957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:25 Heat of formation + Delta-G solvation = 20.000807 kcal Electronic energy + Delta-G solvation = -15198.708961 eV Core-core repulsion = 12736.745490 eV Total energy + Delta-G solvation = -2461.963471 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28907 -39.13212 -35.55164 -34.02795 -32.86761 -31.82922 -30.13094 -27.56756 -25.41910 -24.33983 -23.04559 -22.48483 -19.76449 -18.46400 -18.12104 -17.10714 -16.22989 -16.07504 -15.77493 -15.39094 -15.18882 -14.41354 -14.16063 -14.00898 -13.86758 -13.61082 -12.98360 -12.91056 -12.78043 -12.64303 -12.16355 -11.79910 -11.60844 -11.53604 -11.13020 -10.98892 -9.89586 -9.54373 -9.42558 -8.32045 -8.06744 -6.47183 0.95488 1.01468 1.40107 1.51501 1.55858 1.74402 2.24463 2.80103 2.88315 3.92661 4.02634 4.15534 4.18658 4.27042 4.44699 4.61273 4.75055 4.81956 4.87753 4.94406 4.95601 5.05509 5.11786 5.25768 5.34635 5.41165 5.56191 5.74233 5.78997 6.04676 6.19441 6.32719 6.62057 6.79544 7.01252 7.09927 8.23630 8.49100 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043697 B = 0.006097 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.619288 B = 4591.176854 C = 4994.321060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.256 1.256 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.085 0.915 9 C 0.227 3.773 10 C -0.286 4.286 11 C 0.038 3.962 12 C -0.232 4.232 13 C 0.142 3.858 14 N -0.745 5.745 15 C 0.119 3.881 16 C -0.128 4.128 17 C -0.055 4.055 18 C -0.301 4.301 19 C 0.101 3.899 20 N -0.529 5.529 21 H 0.279 0.721 22 H 0.098 0.902 23 H 0.119 0.881 24 H 0.410 0.590 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.944 -12.869 0.048 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.192 1.192 7 C -0.511 4.511 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.308 4.308 11 C 0.031 3.969 12 C -0.242 4.242 13 C 0.020 3.980 14 N -0.375 5.375 15 C -0.005 4.005 16 C -0.167 4.167 17 C -0.092 4.092 18 C -0.324 4.324 19 C -0.062 4.062 20 N -0.243 5.243 21 H 0.089 0.911 22 H 0.116 0.884 23 H 0.137 0.863 24 H 0.245 0.755 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.363 -12.001 0.105 13.145 hybrid contribution 0.514 0.143 -0.169 0.559 sum 5.877 -11.858 -0.065 13.234 Atomic orbital electron populations 1.70187 1.09044 1.29130 1.30393 1.26981 0.95659 1.04561 0.92217 0.85135 0.79047 0.75729 0.79354 1.18592 1.17962 1.19160 1.19918 0.95123 0.90818 1.45195 0.89726 1.18969 0.88875 0.93206 0.88764 1.22047 0.99440 0.92995 1.16354 1.18905 0.92838 0.92252 0.92901 1.19298 1.03627 0.96385 1.04882 1.20498 0.91340 0.88240 0.97932 1.44249 1.54461 1.19614 1.19217 1.21681 0.95814 0.96193 0.86819 1.21848 0.97057 0.95266 1.02482 1.19983 1.00048 0.94131 0.95066 1.21664 0.95614 0.97573 1.17554 1.22799 0.99369 0.89195 0.94855 1.68611 1.08195 1.28989 1.18526 0.91064 0.88404 0.86301 0.75452 0.92927 0.87423 0.88805 0.91765 0.93163 0.92712 0.86618 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.54 11.56 21.84 0.25 -43.29 16 2 C 0.03 1.43 5.47 85.29 0.47 1.90 16 3 Si 0.99 39.89 29.57 68.60 2.03 41.92 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.48 -27.60 9.13 23.50 0.21 -27.39 16 8 H 0.08 4.58 7.86 -2.91 -0.02 4.56 16 9 C 0.23 13.44 6.52 40.15 0.26 13.70 16 10 C -0.29 -15.08 9.53 23.15 0.22 -14.85 16 11 C 0.04 1.79 5.21 -19.97 -0.10 1.69 16 12 C -0.23 -8.59 5.35 -18.77 -0.10 -8.69 16 13 C 0.14 4.52 10.50 82.56 0.87 5.38 16 14 N -0.74 -16.79 5.79 -345.32 -2.00 -18.78 16 15 C 0.12 2.24 7.14 86.46 0.62 2.86 16 16 C -0.13 -2.78 6.17 30.78 0.19 -2.59 16 17 C -0.05 -1.71 5.83 29.72 0.17 -1.54 16 18 C -0.30 -14.16 9.78 22.81 0.22 -13.94 16 19 C 0.10 5.24 11.16 84.74 0.95 6.19 16 20 N -0.53 -31.51 7.96 -189.52 -1.51 -33.02 16 21 H 0.28 14.27 8.29 -92.70 -0.77 13.50 16 22 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 23 H 0.12 3.91 8.01 -2.91 -0.02 3.89 16 24 H 0.41 6.89 8.96 -92.71 -0.83 6.06 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.79 8.03 -2.39 -0.02 1.78 16 31 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.13 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -69.30 274.02 3.04 -66.27 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.29 Total: 24.19 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 3.97 Total: -37.28 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.25 Total: -95.09 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -69.30 3.04 -66.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243950957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.266 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds