Wall clock time and date at job start Sun Mar 29 2020 21:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48494 * 109.46841 * 269.99825 * 3 2 1 5 5 H 1.48499 * 109.47295 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.47227 * 149.99858 * 3 2 1 7 7 C 1.40045 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00496 * 193.65398 * 7 2 1 9 9 C 1.40535 * 119.99596 * 13.66006 * 7 2 1 10 10 C 1.41337 * 121.39739 * 24.45141 * 9 7 2 11 11 C 1.36185 * 119.07748 * 180.25467 * 10 9 7 12 12 N 1.32219 * 122.28811 * 359.73742 * 11 10 9 13 13 C 1.31368 * 123.23803 * 0.02562 * 12 11 10 14 14 C 1.40192 * 120.43316 * 0.02562 * 13 12 11 15 15 C 1.46350 * 121.12518 * 179.97438 * 14 13 12 16 16 C 1.34182 * 118.75410 * 104.99201 * 15 14 13 17 17 N 1.37389 * 121.63549 * 180.59053 * 16 15 14 18 18 C 1.46972 * 119.00778 * 346.12979 * 17 16 15 19 19 C 1.53496 * 107.83154 * 44.40206 * 18 17 16 20 20 C 1.50668 * 118.67688 * 285.03550 * 15 14 13 21 21 H 0.96993 * 119.99902 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.46120 * 359.97438 * 10 9 7 23 23 H 1.08000 * 118.85568 * 179.71218 * 11 10 9 24 24 H 1.07998 * 119.78591 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.18290 * 0.61216 * 16 15 14 26 26 H 0.97003 * 120.49502 * 166.15933 * 17 16 15 27 27 H 1.09001 * 109.78842 * 284.81801 * 18 17 16 28 28 H 1.08996 * 109.78696 * 163.98594 * 18 17 16 29 29 H 1.09004 * 109.61156 * 58.22085 * 19 18 17 30 30 H 1.09003 * 109.61303 * 178.56089 * 19 18 17 31 31 H 1.08998 * 109.57122 * 39.90030 * 20 15 14 32 32 H 1.08999 * 109.33719 * 280.21417 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0464 -1.4000 5 1 1.4392 2.6527 0.7000 6 1 3.5394 1.4403 0.7000 7 6 2.0082 -1.2128 0.0005 8 1 3.0652 -1.2259 0.2213 9 6 1.3353 -2.4128 -0.2864 10 6 0.1473 -2.4259 -1.0518 11 6 -0.4689 -3.6153 -1.2971 12 7 0.0081 -4.7637 -0.8478 13 6 1.1062 -4.8569 -0.1328 14 6 1.8402 -3.7082 0.1943 15 6 3.0652 -3.7944 0.9905 16 6 4.2477 -3.6492 0.3733 17 7 5.4343 -3.7311 1.0608 18 6 5.4125 -3.6747 2.5293 19 6 4.2738 -4.5808 3.0176 20 6 2.9486 -4.0439 2.4718 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2686 -1.5050 -1.4331 23 1 -1.3791 -3.6207 -1.8785 24 1 1.4457 -5.8248 0.2053 25 1 4.2672 -3.4629 -0.6903 26 1 6.2740 -3.8244 0.5842 27 1 5.2352 -2.6503 2.8567 28 1 6.3632 -4.0304 2.9264 29 1 4.4338 -5.5966 2.6559 30 1 4.2476 -4.5804 4.1073 31 1 2.1596 -4.7723 2.6584 32 1 2.7019 -3.1100 2.9768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243953219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:40 Heat of formation + Delta-G solvation = 31.682695 kcal Electronic energy + Delta-G solvation = -15661.453935 eV Core-core repulsion = 13199.997029 eV Total energy + Delta-G solvation = -2461.456906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.46636 -37.37597 -34.07568 -32.23846 -31.36587 -30.01429 -28.09911 -25.82504 -23.89656 -22.53582 -21.25549 -20.65734 -17.52932 -17.28643 -16.79588 -15.50214 -14.41221 -14.33445 -14.15275 -13.79238 -13.51397 -12.78896 -12.62830 -12.46520 -12.12013 -11.94674 -11.40803 -11.35909 -11.22363 -11.01798 -10.49712 -10.28000 -10.15487 -9.62736 -9.46820 -9.37906 -7.87327 -7.76159 -7.41256 -6.80446 -6.35287 -4.49466 2.70454 2.90787 3.01522 3.05080 3.32776 3.41154 3.85115 4.20049 4.71785 5.25999 5.40892 5.52602 5.73982 5.87621 5.97830 6.03471 6.20269 6.22499 6.45578 6.52023 6.58041 6.75802 6.96365 7.04107 7.20806 7.29106 7.39087 7.53786 7.69378 7.96977 8.19963 8.26230 8.47511 8.59273 8.78678 8.89640 9.84344 10.07085 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.011717 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.803529 B = 2389.213506 C = 3530.540587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.084 0.916 9 C 0.139 3.861 10 C -0.222 4.222 11 C 0.084 3.916 12 N -0.588 5.588 13 C 0.114 3.886 14 C -0.206 4.206 15 C -0.142 4.142 16 C 0.097 3.903 17 N -0.758 5.758 18 C 0.126 3.874 19 C -0.135 4.135 20 C -0.058 4.058 21 H 0.282 0.718 22 H 0.125 0.875 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.390 0.610 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -1.565 3.375 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.463 4.463 8 H 0.102 0.898 9 C 0.131 3.869 10 C -0.245 4.245 11 C -0.066 4.066 12 N -0.303 5.303 13 C -0.042 4.042 14 C -0.212 4.212 15 C -0.152 4.152 16 C -0.021 4.021 17 N -0.390 5.390 18 C 0.001 3.999 19 C -0.173 4.173 20 C -0.095 4.095 21 H 0.093 0.907 22 H 0.143 0.857 23 H 0.128 0.872 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.222 0.778 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.448 -2.141 3.310 8.427 hybrid contribution 0.956 1.706 0.066 1.957 sum 8.405 -0.435 3.376 9.068 Atomic orbital electron populations 1.69804 1.07670 1.29432 1.33903 1.26043 0.94782 1.01580 0.92143 0.86250 0.80506 0.80275 0.79406 1.19173 1.20174 1.18488 1.19444 0.97158 0.90199 1.39485 0.89804 1.18943 0.90289 0.91125 0.86569 1.21880 1.00262 0.98040 1.04316 1.21505 0.98007 0.88943 0.98096 1.66950 1.16144 1.29064 1.18177 1.22146 0.91110 0.95836 0.95106 1.20435 0.99488 0.93664 1.07624 1.18995 0.91251 1.11408 0.93585 1.20664 0.85044 1.00607 0.95797 1.43876 1.06474 1.83869 1.04769 1.21374 0.97891 0.98929 0.81715 1.21870 0.96624 0.99366 0.99483 1.20133 0.95503 1.00079 0.93771 0.90656 0.85723 0.87173 0.86619 0.86258 0.77790 0.93091 0.91840 0.91988 0.91965 0.92125 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.83 10.79 55.55 0.60 -19.23 16 2 C 0.07 1.82 5.26 -17.32 -0.09 1.73 16 3 Si 0.91 18.37 29.58 -169.99 -5.03 13.34 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.43 -11.17 8.64 -38.04 -0.33 -11.50 16 8 H 0.08 2.13 6.89 -52.49 -0.36 1.77 16 9 C 0.14 3.68 5.77 -104.26 -0.60 3.08 16 10 C -0.22 -5.87 8.74 -39.14 -0.34 -6.21 16 11 C 0.08 2.12 11.04 -18.12 -0.20 1.92 16 12 N -0.59 -14.96 10.26 -13.27 -0.14 -15.10 16 13 C 0.11 2.75 11.02 -17.02 -0.19 2.56 16 14 C -0.21 -5.01 5.36 -102.30 -0.55 -5.56 16 15 C -0.14 -2.99 4.60 -102.81 -0.47 -3.46 16 16 C 0.10 1.84 9.90 -16.49 -0.16 1.67 16 17 N -0.76 -11.47 5.76 -60.42 -0.35 -11.82 16 18 C 0.13 1.73 7.13 -3.53 -0.03 1.71 16 19 C -0.13 -1.96 6.16 -26.45 -0.16 -2.12 16 20 C -0.06 -1.07 5.88 -27.88 -0.16 -1.23 16 21 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 22 H 0.13 3.34 6.14 -52.49 -0.32 3.01 16 23 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 24 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 25 H 0.12 2.31 8.02 -52.49 -0.42 1.89 16 26 H 0.39 4.82 8.96 -40.82 -0.37 4.45 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -28.55 270.46 -8.11 -36.66 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.99 Total: 9.48 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.29 Total: -17.42 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.12 Total: -46.15 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.55 -8.11 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243953219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.347 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds