Wall clock time and date at job start Sun Mar 29 2020 21:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48494 * 109.46841 * 269.99825 * 3 2 1 5 5 H 1.48499 * 109.47295 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.47227 * 149.99858 * 3 2 1 7 7 C 1.40045 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00496 * 193.65398 * 7 2 1 9 9 C 1.40535 * 119.99596 * 13.66006 * 7 2 1 10 10 C 1.41337 * 121.39739 * 24.45141 * 9 7 2 11 11 C 1.36185 * 119.07748 * 180.25467 * 10 9 7 12 12 N 1.32219 * 122.28811 * 359.73742 * 11 10 9 13 13 C 1.31368 * 123.23803 * 0.02562 * 12 11 10 14 14 C 1.40192 * 120.43316 * 0.02562 * 13 12 11 15 15 C 1.46350 * 121.12518 * 179.97438 * 14 13 12 16 16 C 1.34182 * 118.75410 * 104.99201 * 15 14 13 17 17 N 1.37389 * 121.63549 * 180.59053 * 16 15 14 18 18 C 1.46972 * 119.00778 * 346.12979 * 17 16 15 19 19 C 1.53496 * 107.83154 * 44.40206 * 18 17 16 20 20 C 1.50668 * 118.67688 * 285.03550 * 15 14 13 21 21 H 0.96993 * 119.99902 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.46120 * 359.97438 * 10 9 7 23 23 H 1.08000 * 118.85568 * 179.71218 * 11 10 9 24 24 H 1.07998 * 119.78591 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.18290 * 0.61216 * 16 15 14 26 26 H 0.97003 * 120.49502 * 166.15933 * 17 16 15 27 27 H 1.09001 * 109.78842 * 284.81801 * 18 17 16 28 28 H 1.08996 * 109.78696 * 163.98594 * 18 17 16 29 29 H 1.09004 * 109.61156 * 58.22085 * 19 18 17 30 30 H 1.09003 * 109.61303 * 178.56089 * 19 18 17 31 31 H 1.08998 * 109.57122 * 39.90030 * 20 15 14 32 32 H 1.08999 * 109.33719 * 280.21417 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4893 2.0464 -1.4000 5 1 1.4392 2.6527 0.7000 6 1 3.5394 1.4403 0.7000 7 6 2.0082 -1.2128 0.0005 8 1 3.0652 -1.2259 0.2213 9 6 1.3353 -2.4128 -0.2864 10 6 0.1473 -2.4259 -1.0518 11 6 -0.4689 -3.6153 -1.2971 12 7 0.0081 -4.7637 -0.8478 13 6 1.1062 -4.8569 -0.1328 14 6 1.8402 -3.7082 0.1943 15 6 3.0652 -3.7944 0.9905 16 6 4.2477 -3.6492 0.3733 17 7 5.4343 -3.7311 1.0608 18 6 5.4125 -3.6747 2.5293 19 6 4.2738 -4.5808 3.0176 20 6 2.9486 -4.0439 2.4718 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2686 -1.5050 -1.4331 23 1 -1.3791 -3.6207 -1.8785 24 1 1.4457 -5.8248 0.2053 25 1 4.2672 -3.4629 -0.6903 26 1 6.2740 -3.8244 0.5842 27 1 5.2352 -2.6503 2.8567 28 1 6.3632 -4.0304 2.9264 29 1 4.4338 -5.5966 2.6559 30 1 4.2476 -4.5804 4.1073 31 1 2.1596 -4.7723 2.6584 32 1 2.7019 -3.1100 2.9768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243953219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:40 Heat of formation + Delta-G solvation = 14.732954 kcal Electronic energy + Delta-G solvation = -15662.188931 eV Core-core repulsion = 13199.997029 eV Total energy + Delta-G solvation = -2462.191902 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13357 -38.97343 -35.97870 -33.80717 -32.75746 -31.91394 -29.81112 -27.72030 -25.30670 -24.02333 -23.18652 -22.27071 -19.41054 -18.80226 -18.14967 -17.36531 -16.24227 -16.06781 -15.64365 -15.20176 -15.08294 -14.39026 -14.18148 -13.92998 -13.87503 -13.61090 -13.13771 -12.97379 -12.84662 -12.70485 -12.05963 -11.85235 -11.55062 -11.28648 -11.25072 -10.84755 -9.81240 -9.73444 -9.30274 -8.66544 -7.83770 -6.44849 0.85758 1.07209 1.36184 1.49476 1.57509 1.82480 2.16216 2.80877 2.97109 3.74054 4.08938 4.15102 4.24612 4.32467 4.55847 4.61094 4.77699 4.89370 4.96863 5.01150 5.07336 5.13878 5.21886 5.32470 5.46255 5.54138 5.65227 5.74843 5.98419 6.08978 6.26071 6.59834 6.80607 6.84871 6.97769 7.25784 7.88354 8.24212 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.011717 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.803529 B = 2389.213506 C = 3530.540587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.245 4.245 11 C 0.076 3.924 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.201 4.201 15 C -0.186 4.186 16 C 0.122 3.878 17 N -0.747 5.747 18 C 0.122 3.878 19 C -0.126 4.126 20 C -0.054 4.054 21 H 0.291 0.709 22 H 0.114 0.886 23 H 0.131 0.869 24 H 0.138 0.862 25 H 0.110 0.890 26 H 0.406 0.594 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.465 -1.260 4.288 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.268 4.268 11 C -0.074 4.074 12 N -0.316 5.316 13 C -0.056 4.056 14 C -0.206 4.206 15 C -0.196 4.196 16 C 0.001 3.999 17 N -0.378 5.378 18 C -0.002 4.002 19 C -0.164 4.164 20 C -0.092 4.092 21 H 0.102 0.898 22 H 0.132 0.868 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.128 0.872 26 H 0.242 0.758 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.756 -1.864 4.237 10.798 hybrid contribution 0.285 1.570 -0.219 1.610 sum 10.041 -0.295 4.018 10.820 Atomic orbital electron populations 1.69854 1.09150 1.30913 1.33874 1.26921 0.95526 1.04795 0.91101 0.85152 0.79046 0.75602 0.79678 1.18445 1.19127 1.18144 1.19599 0.97160 0.90985 1.40484 0.89981 1.19394 0.90859 0.92620 0.87244 1.21882 1.01246 0.98064 1.05611 1.21795 0.98679 0.88661 0.98258 1.66997 1.16827 1.29016 1.18722 1.22561 0.91063 0.96946 0.95075 1.20808 1.00424 0.92758 1.06644 1.19009 0.90605 1.15341 0.94681 1.20547 0.85960 0.97844 0.95557 1.43956 1.05857 1.82205 1.05774 1.21578 0.99680 0.98559 0.80402 1.21829 0.94286 0.99341 1.00989 1.20064 0.97848 0.98973 0.92271 0.89777 0.86837 0.85134 0.84480 0.87208 0.75843 0.93933 0.87550 0.91492 0.89338 0.93198 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.83 10.79 21.84 0.24 -41.60 16 2 C 0.03 1.66 5.26 85.29 0.45 2.11 16 3 Si 0.98 37.27 29.58 68.60 2.03 39.29 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.45 -23.80 8.64 23.27 0.20 -23.60 16 8 H 0.08 4.21 6.89 -2.91 -0.02 4.19 16 9 C 0.11 5.84 5.77 -19.63 -0.11 5.73 16 10 C -0.25 -13.41 8.74 22.55 0.20 -13.21 16 11 C 0.08 3.93 11.04 84.16 0.93 4.86 16 12 N -0.60 -30.95 10.26 -195.90 -2.01 -32.96 16 13 C 0.10 4.79 11.02 85.24 0.94 5.73 16 14 C -0.20 -9.95 5.36 -18.36 -0.10 -10.05 16 15 C -0.19 -7.76 4.60 -18.69 -0.09 -7.84 16 16 C 0.12 4.48 9.90 82.90 0.82 5.30 16 17 N -0.75 -20.38 5.76 -345.08 -1.99 -22.36 16 18 C 0.12 2.91 7.13 86.46 0.62 3.53 16 19 C -0.13 -3.30 6.16 30.78 0.19 -3.11 16 20 C -0.05 -1.98 5.88 29.85 0.18 -1.81 16 21 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 22 H 0.11 6.34 6.14 -2.91 -0.02 6.32 16 23 H 0.13 5.98 8.06 -2.91 -0.02 5.95 16 24 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 25 H 0.11 4.21 8.02 -2.91 -0.02 4.18 16 26 H 0.41 8.59 8.96 -92.71 -0.83 7.76 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -62.56 270.46 2.78 -59.77 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.30 Total: 30.22 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.22 Total: -32.37 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.76 Total: -96.92 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.29 kcal Total: -62.56 2.78 -59.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243953219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.508 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds