Wall clock time and date at job start Sun Mar 29 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47378 * 2 1 4 4 H 1.09000 * 109.47333 * 302.77903 * 3 2 1 5 5 C 1.50694 * 109.47300 * 182.77891 * 3 2 1 6 6 H 1.08000 * 120.00292 * 245.72002 * 5 3 2 7 7 C 1.37877 * 120.00145 * 65.71227 * 5 3 2 8 8 N 1.31515 * 120.00751 * 193.22099 * 7 5 3 9 9 Si 1.86803 * 119.99805 * 13.22853 * 7 5 3 10 10 H 1.48494 * 109.47722 * 85.91937 * 9 7 5 11 11 H 1.48505 * 109.47376 * 205.92218 * 9 7 5 12 12 H 1.48506 * 109.46870 * 325.91336 * 9 7 5 13 13 N 1.46904 * 109.46799 * 62.78135 * 3 2 1 14 14 C 1.46899 * 110.99581 * 208.79016 * 13 3 2 15 15 H 1.09001 * 109.52608 * 321.06287 * 14 13 3 16 16 C 1.53117 * 109.57494 * 81.22900 * 14 13 3 17 17 C 1.53034 * 109.27590 * 177.59120 * 16 14 13 18 18 N 1.46847 * 109.52363 * 300.81277 * 17 16 14 19 19 C 1.46845 * 111.19723 * 61.74556 * 18 17 16 20 20 C 1.53040 * 109.52393 * 298.26036 * 19 18 17 21 21 H 1.08999 * 109.50499 * 179.11832 * 20 19 18 22 22 F 1.39896 * 109.50240 * 299.23787 * 20 19 18 23 23 H 1.09001 * 109.46615 * 304.91289 * 1 2 3 24 24 H 1.09001 * 109.46864 * 64.90314 * 1 2 3 25 25 H 1.08996 * 109.47148 * 184.91127 * 1 2 3 26 26 H 1.09006 * 109.46844 * 240.00338 * 2 1 3 27 27 H 1.08997 * 109.47677 * 120.00296 * 2 1 3 28 28 H 0.96996 * 120.00525 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99696 * 84.83472 * 13 3 2 30 30 H 1.09006 * 109.49801 * 297.52495 * 16 14 13 31 31 H 1.08997 * 109.50869 * 57.64634 * 16 14 13 32 32 H 1.09005 * 109.46113 * 180.80578 * 17 16 14 33 33 H 1.08998 * 109.45827 * 60.82741 * 17 16 14 34 34 H 1.00903 * 111.00382 * 297.64906 * 18 17 16 35 35 H 1.09001 * 109.46865 * 178.24430 * 19 18 17 36 36 H 1.09004 * 109.46487 * 58.27367 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6367 1.9706 -0.8640 5 6 3.5454 1.4431 -0.0689 6 1 4.1240 1.8140 0.7642 7 6 4.1842 0.9698 -1.1954 8 7 5.4760 0.7251 -1.1651 9 14 3.2147 0.6764 -2.7649 10 1 3.1326 1.9404 -3.5399 11 1 3.8956 -0.3610 -3.5808 12 1 1.8451 0.2161 -2.4220 13 7 1.6060 2.1153 1.2317 14 6 1.4473 3.5595 1.0147 15 1 2.2445 3.9200 0.3645 16 6 0.0902 3.8339 0.3608 17 6 -0.0936 5.3438 0.1928 18 7 -0.0224 5.9960 1.5066 19 6 1.2889 5.7861 2.1333 20 6 1.5141 4.2893 2.3591 21 1 2.4940 4.1326 2.8100 22 9 0.5223 3.7911 3.2107 23 1 -0.3632 0.5882 0.8427 24 1 -0.3633 0.4359 -0.9307 25 1 -0.3633 -1.0239 0.0880 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 5.9254 0.3926 -1.9577 29 1 2.2469 1.9317 1.9891 30 1 0.0529 3.3518 -0.6162 31 1 -0.7049 3.4386 0.9929 32 1 -1.0651 5.5433 -0.2594 33 1 0.6940 5.7361 -0.4505 34 1 -0.7663 5.6775 2.1093 35 1 1.3217 6.3067 3.0903 36 1 2.0700 6.1764 1.4808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246084599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:34 Heat of formation + Delta-G solvation = -58.978761 kcal Electronic energy + Delta-G solvation = -17332.048060 eV Core-core repulsion = 14571.723648 eV Total energy + Delta-G solvation = -2760.324412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.34367 -38.28891 -35.99894 -32.68051 -31.79274 -30.45116 -28.88324 -26.46513 -23.09823 -22.84443 -22.13930 -19.84307 -19.56676 -17.12283 -16.36273 -15.65761 -15.51336 -15.20671 -14.72353 -14.45579 -13.70631 -13.02519 -12.98336 -12.82156 -12.70735 -12.36349 -12.03336 -11.70751 -11.62235 -11.41266 -11.32473 -10.95567 -10.79390 -10.67157 -10.23871 -9.92414 -9.76685 -9.53328 -9.21722 -8.53943 -8.35758 -7.44410 -6.20511 -4.18592 3.21710 3.31499 3.34054 4.26555 4.33495 4.68645 4.79664 4.85396 5.08011 5.11897 5.24235 5.50202 5.52227 5.60817 5.82986 5.93930 6.06123 6.10562 6.12261 6.15967 6.30431 6.35373 6.59835 6.65574 6.80624 6.99587 7.05009 7.15554 7.34604 7.36424 7.52782 7.94066 8.29095 8.42940 8.83868 9.45405 10.92379 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.008634 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.173124 B = 3242.148697 C = 3370.177127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.189 3.811 4 H 0.027 0.973 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.862 3.138 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.672 5.672 14 C 0.069 3.931 15 H 0.063 0.937 16 C -0.144 4.144 17 C 0.053 3.947 18 N -0.682 5.682 19 C 0.035 3.965 20 C 0.054 3.946 21 H 0.082 0.918 22 F -0.208 7.208 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.264 0.736 29 H 0.336 0.664 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.083 0.917 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 7.092 3.568 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.045 0.955 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.302 5.302 14 C -0.042 4.042 15 H 0.081 0.919 16 C -0.184 4.184 17 C -0.077 4.077 18 N -0.311 5.311 19 C -0.096 4.096 20 C 0.016 3.984 21 H 0.100 0.900 22 F -0.189 7.189 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.101 0.899 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.072 7.494 3.113 12.934 hybrid contribution 0.715 -1.030 -0.731 1.451 sum -9.357 6.463 2.382 11.619 Atomic orbital electron populations 1.21739 0.97984 0.99338 1.00961 1.21872 0.93406 0.98983 1.00857 1.19484 0.93770 0.90823 0.87950 0.95531 1.21677 0.90262 1.43696 1.03429 0.91216 1.24954 0.94676 0.93957 0.98911 1.69971 1.09642 1.43819 1.29416 0.87267 0.81941 0.78257 0.83624 1.20568 1.21426 1.17027 1.60760 1.53967 1.06228 1.09204 1.21901 0.97540 0.90818 0.93915 0.91918 1.22245 0.97785 0.96477 1.01843 1.22104 1.02314 0.92078 0.91195 1.60672 1.04392 1.60699 1.05287 1.22609 0.93228 0.92939 1.00783 1.22525 0.90187 0.95482 0.90247 0.90034 1.92773 1.64409 1.89260 1.72409 0.91918 0.94654 0.95018 0.92734 0.92924 0.92619 0.84657 0.91170 0.91200 0.90650 0.90862 0.83859 0.89873 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.85 37.16 0.37 -2.29 16 2 C -0.11 -2.45 4.98 -26.73 -0.13 -2.58 16 3 C 0.19 4.26 1.37 -68.86 -0.09 4.16 16 4 H 0.03 0.62 5.61 -51.93 -0.29 0.33 16 5 C -0.55 -14.78 8.90 -34.44 -0.31 -15.09 16 6 H 0.07 2.03 7.89 -52.49 -0.41 1.61 16 7 C 0.08 2.19 5.37 -17.82 -0.10 2.10 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.86 20.71 25.87 -169.99 -4.40 16.32 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.25 -5.57 5.31 56.52 0.30 -5.27 16 13 N -0.67 -13.21 5.23 -100.82 -0.53 -13.74 16 14 C 0.07 1.19 2.20 -67.59 -0.15 1.04 16 15 H 0.06 1.20 7.82 -51.93 -0.41 0.80 16 16 C -0.14 -2.21 5.38 -26.65 -0.14 -2.35 16 17 C 0.05 0.68 6.55 -3.84 -0.03 0.66 16 18 N -0.68 -8.48 6.86 -113.82 -0.78 -9.26 16 19 C 0.04 0.44 6.33 -3.83 -0.02 0.41 16 20 C 0.05 0.79 3.52 -26.65 -0.09 0.70 16 21 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 22 F -0.21 -3.34 16.19 2.25 0.04 -3.31 16 23 H 0.06 1.16 7.55 -51.93 -0.39 0.76 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.25 4.70 -51.93 -0.24 1.00 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.34 6.82 7.99 -39.29 -0.31 6.50 16 30 H 0.07 1.16 7.25 -51.93 -0.38 0.78 16 31 H 0.07 1.11 7.91 -51.93 -0.41 0.70 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.34 4.15 8.51 -39.29 -0.33 3.81 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 280.75 15.07 4.23 4.23 Total: -1.00 -28.47 280.75 -7.16 -35.63 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.80 Total: 9.18 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.70 Total: -13.24 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.53 Total: -48.81 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.40 Total: 16.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.47 -7.16 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.349 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds