Wall clock time and date at job start Sun Mar 29 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47378 * 2 1 4 4 H 1.09000 * 109.47333 * 302.77903 * 3 2 1 5 5 C 1.50694 * 109.47300 * 182.77891 * 3 2 1 6 6 H 1.08000 * 120.00292 * 245.72002 * 5 3 2 7 7 C 1.37877 * 120.00145 * 65.71227 * 5 3 2 8 8 N 1.31515 * 120.00751 * 193.22099 * 7 5 3 9 9 Si 1.86803 * 119.99805 * 13.22853 * 7 5 3 10 10 H 1.48494 * 109.47722 * 85.91937 * 9 7 5 11 11 H 1.48505 * 109.47376 * 205.92218 * 9 7 5 12 12 H 1.48506 * 109.46870 * 325.91336 * 9 7 5 13 13 N 1.46904 * 109.46799 * 62.78135 * 3 2 1 14 14 C 1.46899 * 110.99581 * 208.79016 * 13 3 2 15 15 H 1.09001 * 109.52608 * 321.06287 * 14 13 3 16 16 C 1.53117 * 109.57494 * 81.22900 * 14 13 3 17 17 C 1.53034 * 109.27590 * 177.59120 * 16 14 13 18 18 N 1.46847 * 109.52363 * 300.81277 * 17 16 14 19 19 C 1.46845 * 111.19723 * 61.74556 * 18 17 16 20 20 C 1.53040 * 109.52393 * 298.26036 * 19 18 17 21 21 H 1.08999 * 109.50499 * 179.11832 * 20 19 18 22 22 F 1.39896 * 109.50240 * 299.23787 * 20 19 18 23 23 H 1.09001 * 109.46615 * 304.91289 * 1 2 3 24 24 H 1.09001 * 109.46864 * 64.90314 * 1 2 3 25 25 H 1.08996 * 109.47148 * 184.91127 * 1 2 3 26 26 H 1.09006 * 109.46844 * 240.00338 * 2 1 3 27 27 H 1.08997 * 109.47677 * 120.00296 * 2 1 3 28 28 H 0.96996 * 120.00525 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99696 * 84.83472 * 13 3 2 30 30 H 1.09006 * 109.49801 * 297.52495 * 16 14 13 31 31 H 1.08997 * 109.50869 * 57.64634 * 16 14 13 32 32 H 1.09005 * 109.46113 * 180.80578 * 17 16 14 33 33 H 1.08998 * 109.45827 * 60.82741 * 17 16 14 34 34 H 1.00903 * 111.00382 * 297.64906 * 18 17 16 35 35 H 1.09001 * 109.46865 * 178.24430 * 19 18 17 36 36 H 1.09004 * 109.46487 * 58.27367 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6367 1.9706 -0.8640 5 6 3.5454 1.4431 -0.0689 6 1 4.1240 1.8140 0.7642 7 6 4.1842 0.9698 -1.1954 8 7 5.4760 0.7251 -1.1651 9 14 3.2147 0.6764 -2.7649 10 1 3.1326 1.9404 -3.5399 11 1 3.8956 -0.3610 -3.5808 12 1 1.8451 0.2161 -2.4220 13 7 1.6060 2.1153 1.2317 14 6 1.4473 3.5595 1.0147 15 1 2.2445 3.9200 0.3645 16 6 0.0902 3.8339 0.3608 17 6 -0.0936 5.3438 0.1928 18 7 -0.0224 5.9960 1.5066 19 6 1.2889 5.7861 2.1333 20 6 1.5141 4.2893 2.3591 21 1 2.4940 4.1326 2.8100 22 9 0.5223 3.7911 3.2107 23 1 -0.3632 0.5882 0.8427 24 1 -0.3633 0.4359 -0.9307 25 1 -0.3633 -1.0239 0.0880 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 5.9254 0.3926 -1.9577 29 1 2.2469 1.9317 1.9891 30 1 0.0529 3.3518 -0.6162 31 1 -0.7049 3.4386 0.9929 32 1 -1.0651 5.5433 -0.2594 33 1 0.6940 5.7361 -0.4505 34 1 -0.7663 5.6775 2.1093 35 1 1.3217 6.3067 3.0903 36 1 2.0700 6.1764 1.4808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246084599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:34 Heat of formation + Delta-G solvation = -80.087480 kcal Electronic energy + Delta-G solvation = -17332.963403 eV Core-core repulsion = 14571.723648 eV Total energy + Delta-G solvation = -2761.239755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.60152 -39.58075 -37.55638 -34.50650 -33.52391 -31.57314 -30.36720 -28.25245 -24.68162 -24.02126 -23.56652 -21.36375 -21.05062 -19.14320 -17.58494 -17.07422 -16.90017 -16.67190 -16.16478 -15.71797 -15.35578 -14.88788 -14.41809 -14.27321 -14.02280 -13.74460 -13.59850 -13.34879 -13.00459 -12.74601 -12.61575 -12.55728 -12.46150 -12.18807 -11.77726 -11.51903 -11.39399 -11.22266 -11.02433 -10.63548 -9.43302 -9.13716 -8.36724 -6.38629 1.30705 1.34599 1.43755 2.30528 2.98652 3.17393 3.39082 3.55140 3.69177 3.86743 4.05267 4.31339 4.37293 4.42213 4.44445 4.55663 4.62057 4.78753 4.81473 4.88909 4.93205 4.99280 5.06802 5.21318 5.26583 5.38965 5.49607 5.50641 5.69478 5.95732 6.04199 6.35848 6.39632 6.58085 6.75067 7.29447 8.79413 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.008634 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.173124 B = 3242.148697 C = 3370.177127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.197 3.803 4 H 0.027 0.973 5 C -0.551 4.551 6 H 0.031 0.969 7 C 0.022 3.978 8 N -0.941 5.941 9 Si 0.922 3.078 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.221 1.221 13 N -0.666 5.666 14 C 0.064 3.936 15 H 0.039 0.961 16 C -0.136 4.136 17 C 0.059 3.941 18 N -0.677 5.677 19 C 0.041 3.959 20 C 0.058 3.942 21 H 0.081 0.919 22 F -0.213 7.213 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.329 0.671 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.348 0.652 35 H 0.104 0.896 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 7.805 3.189 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C 0.088 3.912 4 H 0.044 0.956 5 C -0.589 4.589 6 H 0.049 0.951 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.144 1.144 13 N -0.294 5.294 14 C -0.047 4.047 15 H 0.057 0.943 16 C -0.175 4.175 17 C -0.071 4.071 18 N -0.306 5.306 19 C -0.090 4.090 20 C 0.019 3.981 21 H 0.099 0.901 22 F -0.194 7.194 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.122 0.878 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.475 8.222 2.752 15.192 hybrid contribution 1.512 -1.226 -0.508 2.012 sum -10.963 6.996 2.244 13.197 Atomic orbital electron populations 1.21622 0.95065 1.00868 1.01395 1.21814 0.95959 0.97651 0.99874 1.19332 0.90746 0.91994 0.89177 0.95561 1.21987 0.92574 1.42355 1.02015 0.95070 1.25798 0.95512 0.93988 1.02372 1.70109 1.11647 1.45843 1.30429 0.86290 0.81634 0.78247 0.79184 1.20013 1.21589 1.14404 1.60810 1.52934 1.07989 1.07685 1.22021 0.98028 0.89311 0.95348 0.94253 1.22192 0.96135 0.98419 1.00795 1.22095 1.03437 0.89999 0.91573 1.60686 1.04457 1.60227 1.05196 1.22638 0.93411 0.90946 1.01980 1.22540 0.90048 0.96850 0.88651 0.90140 1.92761 1.64640 1.89549 1.72456 0.91822 0.93907 0.92910 0.93804 0.93933 0.92618 0.85436 0.92265 0.91366 0.88524 0.91096 0.83307 0.87810 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.85 71.98 0.71 -3.84 16 2 C -0.11 -4.83 4.98 30.60 0.15 -4.67 16 3 C 0.20 8.83 1.37 44.17 0.06 8.89 16 4 H 0.03 1.20 5.61 -2.39 -0.01 1.19 16 5 C -0.55 -30.20 8.90 25.60 0.23 -29.97 16 6 H 0.03 1.90 7.89 -2.91 -0.02 1.88 16 7 C 0.02 1.26 5.37 84.65 0.45 1.72 16 8 N -0.94 -57.75 13.96 21.45 0.30 -57.46 16 9 Si 0.92 42.58 25.87 68.60 1.77 44.35 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.22 -9.25 5.31 99.48 0.53 -8.72 16 13 N -0.67 -26.01 5.23 -472.89 -2.47 -28.49 16 14 C 0.06 2.15 2.20 45.00 0.10 2.25 16 15 H 0.04 1.52 7.82 -2.39 -0.02 1.50 16 16 C -0.14 -3.92 5.38 30.64 0.16 -3.75 16 17 C 0.06 1.37 6.55 86.32 0.57 1.93 16 18 N -0.68 -14.97 6.86 -514.00 -3.53 -18.49 16 19 C 0.04 0.93 6.33 86.33 0.55 1.48 16 20 C 0.06 1.63 3.52 30.65 0.11 1.74 16 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 22 F -0.21 -6.51 16.19 44.97 0.73 -5.78 16 23 H 0.06 2.17 7.55 -2.39 -0.02 2.16 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.92 4.70 -2.38 -0.01 1.91 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.33 13.57 7.99 -89.69 -0.72 12.85 16 30 H 0.06 1.84 7.25 -2.38 -0.02 1.82 16 31 H 0.07 2.00 7.91 -2.39 -0.02 1.99 16 32 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.35 7.36 8.51 -89.69 -0.76 6.59 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -61.48 280.75 -0.69 -62.18 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.58 Total: 27.92 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.09 Total: -24.23 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -5.70 Total: -104.43 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.73 Total: -5.78 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.77 Total: 44.35 kcal Total: -61.48 -0.69 -62.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.911 kcal (2) G-P(sol) polarization free energy of solvation -61.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds