Wall clock time and date at job start Sun Mar 29 2020 21:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47183 * 304.40012 * 3 2 1 5 5 C 1.50700 * 109.47247 * 184.39866 * 3 2 1 6 6 H 1.07998 * 120.00075 * 240.00479 * 5 3 2 7 7 C 1.37872 * 120.00063 * 60.00190 * 5 3 2 8 8 N 1.31521 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00347 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46941 * 90.00007 * 9 7 5 11 11 H 1.48494 * 109.47115 * 209.99828 * 9 7 5 12 12 H 1.48496 * 109.46703 * 330.00157 * 9 7 5 13 13 N 1.46903 * 109.46876 * 64.39935 * 3 2 1 14 14 C 1.46899 * 110.99767 * 204.91175 * 13 3 2 15 15 H 1.08995 * 109.52829 * 329.43553 * 14 13 3 16 16 C 1.53125 * 109.52474 * 209.30388 * 14 13 3 17 17 C 1.53039 * 109.27727 * 182.44445 * 16 14 13 18 18 N 1.46846 * 109.52447 * 59.18414 * 17 16 14 19 19 C 1.46858 * 111.19462 * 298.25377 * 18 17 16 20 20 C 1.53032 * 109.52216 * 61.74454 * 19 18 17 21 21 H 1.08996 * 109.50517 * 60.76137 * 20 19 18 22 22 F 1.39901 * 109.50349 * 180.88029 * 20 19 18 23 23 H 1.09005 * 109.46801 * 304.38366 * 1 2 3 24 24 H 1.08999 * 109.47244 * 64.38663 * 1 2 3 25 25 H 1.09006 * 109.46904 * 184.39144 * 1 2 3 26 26 H 1.09000 * 109.47131 * 240.00472 * 2 1 3 27 27 H 1.08998 * 109.47693 * 120.00288 * 2 1 3 28 28 H 0.96993 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99896 * 80.96860 * 13 3 2 30 30 H 1.09001 * 109.49877 * 302.38665 * 16 14 13 31 31 H 1.08997 * 109.49873 * 62.50307 * 16 14 13 32 32 H 1.08998 * 109.45581 * 179.19861 * 17 16 14 33 33 H 1.08996 * 109.46218 * 299.17390 * 17 16 14 34 34 H 1.00897 * 111.00450 * 62.34526 * 18 17 16 35 35 H 1.09002 * 109.45866 * 181.75956 * 19 18 17 36 36 H 1.08999 * 109.45908 * 301.72737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6137 1.9786 -0.8479 5 6 3.5430 1.4440 -0.1090 6 1 4.1406 1.8913 0.6716 7 6 4.1553 0.8744 -1.2051 8 7 3.4277 0.3292 -2.1554 9 14 6.0185 0.8755 -1.3399 10 1 6.5612 -0.3544 -0.7089 11 1 6.4111 0.9119 -2.7715 12 1 6.5641 2.0698 -0.6463 13 7 1.6389 2.1036 1.2491 14 6 1.5638 3.5601 1.0731 15 1 2.2883 3.8742 0.3219 16 6 1.8729 4.2529 2.4033 17 6 1.7334 5.7669 2.2288 18 7 0.3673 6.0872 1.7955 19 6 0.0640 5.4715 0.4972 20 6 0.1537 3.9487 0.6200 21 1 -0.5734 3.5993 1.3530 22 9 -0.1157 3.3634 -0.6218 23 1 -0.3633 0.5804 0.8482 24 1 -0.3634 0.4442 -0.9267 25 1 -0.3633 -1.0247 0.0787 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8583 -0.0713 -2.9267 29 1 2.2647 1.8624 2.0029 30 1 1.1728 3.9081 3.1643 31 1 2.8912 4.0141 2.7098 32 1 1.9389 6.2621 3.1778 33 1 2.4431 6.1128 1.4774 34 1 -0.3074 5.8110 2.4930 35 1 -0.9429 5.7523 0.1885 36 1 0.7818 5.8188 -0.2459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246084603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:39 Heat of formation + Delta-G solvation = -64.121918 kcal Electronic energy + Delta-G solvation = -17350.946414 eV Core-core repulsion = 14590.398978 eV Total energy + Delta-G solvation = -2760.547436 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.95887 -38.43464 -35.76806 -32.71694 -31.31872 -30.15205 -28.63442 -25.92685 -23.12382 -22.74824 -22.00594 -20.22534 -19.33797 -16.62969 -16.05017 -15.61671 -15.25249 -14.89325 -14.74156 -14.20589 -13.43273 -13.30848 -12.89448 -12.80224 -12.42671 -11.91173 -11.80201 -11.66586 -11.31523 -11.12791 -10.91730 -10.85450 -10.65759 -10.46775 -10.31923 -9.92040 -9.54159 -9.44092 -9.03135 -8.41187 -8.31585 -7.34329 -5.98379 -4.11606 3.25895 3.33303 3.34900 4.25236 4.38889 4.70037 4.93136 5.03316 5.14565 5.26916 5.38037 5.48511 5.56037 5.69132 5.88620 6.04968 6.05331 6.18506 6.25567 6.45601 6.56679 6.66654 6.77059 6.95935 7.19312 7.25336 7.31155 7.45938 7.62563 7.79308 8.08163 8.15494 8.32905 8.64153 9.00710 9.55556 11.01942 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.009163 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.891199 B = 3054.966168 C = 3608.155605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.211 3.789 4 H 0.047 0.953 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.067 3.933 15 H 0.061 0.939 16 C -0.156 4.156 17 C 0.055 3.945 18 N -0.678 5.678 19 C 0.032 3.968 20 C 0.073 3.927 21 H 0.074 0.926 22 F -0.202 7.202 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.022 0.978 26 H 0.089 0.911 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.340 0.660 35 H 0.082 0.918 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 7.774 7.308 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.065 0.935 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.045 4.045 15 H 0.079 0.921 16 C -0.196 4.196 17 C -0.075 4.075 18 N -0.306 5.306 19 C -0.099 4.099 20 C 0.034 3.966 21 H 0.092 0.908 22 F -0.183 7.183 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.543 8.180 6.700 11.939 hybrid contribution 1.990 -0.955 -0.009 2.208 sum -3.553 7.225 6.691 10.469 Atomic orbital electron populations 1.21683 0.98955 0.98107 1.00516 1.21477 0.92162 0.99264 1.01434 1.19318 0.92532 0.91364 0.86489 0.93505 1.21855 0.92775 1.38254 1.05754 0.93109 1.24928 0.97846 0.95057 0.95666 1.69886 1.34790 1.37889 1.09457 0.86676 0.86211 0.78314 0.77244 1.20675 1.21169 1.20150 1.60915 1.55947 1.04170 1.10204 1.21894 0.94741 0.91467 0.96365 0.92079 1.22484 1.02723 0.96513 0.97867 1.22082 0.90560 0.93724 1.01152 1.60703 1.04244 1.60910 1.04784 1.22680 1.02927 0.91436 0.92897 1.22435 0.98611 0.92867 0.82660 0.90817 1.92810 1.95058 1.85861 1.44539 0.93491 0.94280 0.95891 0.89227 0.95446 0.92880 0.85403 0.91475 0.90920 0.90563 0.90631 0.84274 0.89968 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.85 37.16 0.37 -2.56 16 2 C -0.10 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.21 5.26 1.63 -68.86 -0.11 5.15 16 4 H 0.05 1.32 6.30 -51.93 -0.33 1.00 16 5 C -0.55 -14.81 8.29 -34.44 -0.29 -15.09 16 6 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -25.33 11.29 55.43 0.63 -24.70 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.09 5.42 -100.82 -0.55 -14.63 16 14 C 0.07 1.20 2.25 -67.58 -0.15 1.05 16 15 H 0.06 1.30 7.60 -51.93 -0.39 0.90 16 16 C -0.16 -2.16 5.30 -26.65 -0.14 -2.30 16 17 C 0.05 0.66 6.55 -3.83 -0.03 0.63 16 18 N -0.68 -8.07 6.87 -113.81 -0.78 -8.86 16 19 C 0.03 0.43 6.29 -3.83 -0.02 0.41 16 20 C 0.07 1.22 3.65 -26.65 -0.10 1.12 16 21 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 22 F -0.20 -4.16 15.31 2.25 0.03 -4.13 16 23 H 0.05 0.97 7.61 -51.93 -0.40 0.58 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 2.46 5.96 -51.93 -0.31 2.15 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.33 6.66 7.99 -39.29 -0.31 6.35 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.34 3.51 8.86 -39.29 -0.35 3.16 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -28.57 286.10 -7.95 -36.51 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.86 Total: 7.80 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.71 Total: -12.55 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.70 Total: -48.19 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.03 Total: -4.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.57 -7.95 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.608 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds