Wall clock time and date at job start Sun Mar 29 2020 21:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47183 * 304.40012 * 3 2 1 5 5 C 1.50700 * 109.47247 * 184.39866 * 3 2 1 6 6 H 1.07998 * 120.00075 * 240.00479 * 5 3 2 7 7 C 1.37872 * 120.00063 * 60.00190 * 5 3 2 8 8 N 1.31521 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00347 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46941 * 90.00007 * 9 7 5 11 11 H 1.48494 * 109.47115 * 209.99828 * 9 7 5 12 12 H 1.48496 * 109.46703 * 330.00157 * 9 7 5 13 13 N 1.46903 * 109.46876 * 64.39935 * 3 2 1 14 14 C 1.46899 * 110.99767 * 204.91175 * 13 3 2 15 15 H 1.08995 * 109.52829 * 329.43553 * 14 13 3 16 16 C 1.53125 * 109.52474 * 209.30388 * 14 13 3 17 17 C 1.53039 * 109.27727 * 182.44445 * 16 14 13 18 18 N 1.46846 * 109.52447 * 59.18414 * 17 16 14 19 19 C 1.46858 * 111.19462 * 298.25377 * 18 17 16 20 20 C 1.53032 * 109.52216 * 61.74454 * 19 18 17 21 21 H 1.08996 * 109.50517 * 60.76137 * 20 19 18 22 22 F 1.39901 * 109.50349 * 180.88029 * 20 19 18 23 23 H 1.09005 * 109.46801 * 304.38366 * 1 2 3 24 24 H 1.08999 * 109.47244 * 64.38663 * 1 2 3 25 25 H 1.09006 * 109.46904 * 184.39144 * 1 2 3 26 26 H 1.09000 * 109.47131 * 240.00472 * 2 1 3 27 27 H 1.08998 * 109.47693 * 120.00288 * 2 1 3 28 28 H 0.96993 * 120.00681 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99896 * 80.96860 * 13 3 2 30 30 H 1.09001 * 109.49877 * 302.38665 * 16 14 13 31 31 H 1.08997 * 109.49873 * 62.50307 * 16 14 13 32 32 H 1.08998 * 109.45581 * 179.19861 * 17 16 14 33 33 H 1.08996 * 109.46218 * 299.17390 * 17 16 14 34 34 H 1.00897 * 111.00450 * 62.34526 * 18 17 16 35 35 H 1.09002 * 109.45866 * 181.75956 * 19 18 17 36 36 H 1.08999 * 109.45908 * 301.72737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6137 1.9786 -0.8479 5 6 3.5430 1.4440 -0.1090 6 1 4.1406 1.8913 0.6716 7 6 4.1553 0.8744 -1.2051 8 7 3.4277 0.3292 -2.1554 9 14 6.0185 0.8755 -1.3399 10 1 6.5612 -0.3544 -0.7089 11 1 6.4111 0.9119 -2.7715 12 1 6.5641 2.0698 -0.6463 13 7 1.6389 2.1036 1.2491 14 6 1.5638 3.5601 1.0731 15 1 2.2883 3.8742 0.3219 16 6 1.8729 4.2529 2.4033 17 6 1.7334 5.7669 2.2288 18 7 0.3673 6.0872 1.7955 19 6 0.0640 5.4715 0.4972 20 6 0.1537 3.9487 0.6200 21 1 -0.5734 3.5993 1.3530 22 9 -0.1157 3.3634 -0.6218 23 1 -0.3633 0.5804 0.8482 24 1 -0.3634 0.4442 -0.9267 25 1 -0.3633 -1.0247 0.0787 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8583 -0.0713 -2.9267 29 1 2.2647 1.8624 2.0029 30 1 1.1728 3.9081 3.1643 31 1 2.8912 4.0141 2.7098 32 1 1.9389 6.2621 3.1778 33 1 2.4431 6.1128 1.4774 34 1 -0.3074 5.8110 2.4930 35 1 -0.9429 5.7523 0.1885 36 1 0.7818 5.8188 -0.2459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246084603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:38 Heat of formation + Delta-G solvation = -84.576773 kcal Electronic energy + Delta-G solvation = -17351.833404 eV Core-core repulsion = 14590.398978 eV Total energy + Delta-G solvation = -2761.434425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.46853 -39.69730 -37.49685 -34.49746 -33.16851 -31.32409 -30.20153 -27.82573 -24.86473 -23.99810 -23.38214 -21.66178 -21.15676 -18.68318 -17.29689 -17.08483 -16.71862 -16.52747 -16.18249 -15.69030 -15.12766 -14.82661 -14.70781 -14.22599 -13.84061 -13.43376 -13.31595 -13.09256 -12.99889 -12.93632 -12.67744 -12.55666 -12.16597 -11.99292 -11.84881 -11.59515 -11.31018 -11.28757 -10.99603 -10.45398 -9.46832 -9.13955 -8.07411 -6.30008 1.35206 1.36034 1.45193 2.37088 3.11589 3.22437 3.37450 3.70426 3.83309 3.86265 4.07271 4.31587 4.38916 4.51150 4.59747 4.71877 4.74206 4.78493 4.92171 4.94531 5.00073 5.06241 5.20645 5.30055 5.39988 5.49891 5.60364 5.78340 5.89893 6.09462 6.17203 6.33268 6.44595 6.78735 6.99120 7.41340 8.89717 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.025970 B = 0.009163 C = 0.007758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.891199 B = 3054.966168 C = 3608.155605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.560 4.560 6 H 0.050 0.950 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.065 3.935 15 H 0.020 0.980 16 C -0.145 4.145 17 C 0.060 3.940 18 N -0.670 5.670 19 C 0.043 3.957 20 C 0.068 3.932 21 H 0.089 0.911 22 F -0.228 7.228 23 H 0.056 0.944 24 H 0.024 0.976 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.355 0.645 35 H 0.101 0.899 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 8.737 9.142 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.027 0.973 5 C -0.599 4.599 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.304 5.304 14 C -0.047 4.047 15 H 0.038 0.962 16 C -0.184 4.184 17 C -0.070 4.070 18 N -0.298 5.298 19 C -0.089 4.089 20 C 0.029 3.971 21 H 0.107 0.893 22 F -0.209 7.209 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.119 0.881 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.706 9.158 8.561 13.774 hybrid contribution 2.017 -1.235 -0.560 2.430 sum -3.690 7.923 8.001 11.849 Atomic orbital electron populations 1.21520 0.96561 0.99585 1.00161 1.21354 0.94279 0.98663 0.99820 1.19003 0.91310 0.91451 0.87055 0.97319 1.22184 0.94092 1.37896 1.05760 0.93214 1.25709 1.02280 0.94856 0.95450 1.70030 1.36490 1.38626 1.09910 0.85664 0.80902 0.78536 0.77162 1.19967 1.21036 1.19542 1.60834 1.55349 1.05889 1.08292 1.21982 0.94857 0.89991 0.97838 0.96186 1.22429 1.03047 0.97496 0.95466 1.22098 0.90356 0.92298 1.02282 1.60696 1.04606 1.60134 1.04411 1.22566 1.03608 0.88971 0.93708 1.22737 0.97785 0.94919 0.81661 0.89279 1.92761 1.95161 1.86571 1.46453 0.92486 0.95658 0.93652 0.92359 0.95382 0.92950 0.85110 0.89662 0.91119 0.87491 0.91892 0.82618 0.88087 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.85 71.98 0.71 -4.48 16 2 C -0.10 -5.13 5.45 30.59 0.17 -4.96 16 3 C 0.22 11.29 1.63 44.17 0.07 11.36 16 4 H 0.01 0.52 6.30 -2.39 -0.02 0.51 16 5 C -0.56 -30.89 8.29 25.60 0.21 -30.68 16 6 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -53.76 11.29 21.45 0.24 -53.52 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.67 -27.79 5.42 -472.88 -2.56 -30.36 16 14 C 0.06 2.31 2.25 45.00 0.10 2.41 16 15 H 0.02 0.88 7.60 -2.39 -0.02 0.86 16 16 C -0.14 -3.71 5.30 30.65 0.16 -3.55 16 17 C 0.06 1.27 6.55 86.33 0.57 1.84 16 18 N -0.67 -13.98 6.87 -513.99 -3.53 -17.51 16 19 C 0.04 1.10 6.29 86.32 0.54 1.64 16 20 C 0.07 2.21 3.65 30.65 0.11 2.32 16 21 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 22 F -0.23 -9.61 15.31 44.97 0.69 -8.92 16 23 H 0.06 2.30 7.61 -2.38 -0.02 2.29 16 24 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.06 3.29 5.96 -2.39 -0.01 3.28 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.33 13.24 7.99 -89.69 -0.72 12.53 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.35 5.94 8.86 -89.70 -0.79 5.14 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -62.85 286.10 -0.49 -63.34 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.44 Total: 23.55 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.09 Total: -22.69 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.85 Total: -101.38 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.69 Total: -8.92 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.85 -0.49 -63.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.236 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds