Wall clock time and date at job start Sun Mar 29 2020 21:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47500 * 2 1 4 4 H 1.09004 * 109.46584 * 304.06513 * 3 2 1 5 5 C 1.50697 * 109.47406 * 184.06586 * 3 2 1 6 6 H 1.07999 * 119.99953 * 239.99611 * 5 3 2 7 7 C 1.37881 * 119.99736 * 59.99582 * 5 3 2 8 8 N 1.31511 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99528 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47202 * 90.00045 * 9 7 5 11 11 H 1.48498 * 109.47031 * 209.99942 * 9 7 5 12 12 H 1.48500 * 109.47402 * 330.00065 * 9 7 5 13 13 N 1.46896 * 109.47281 * 64.06234 * 3 2 1 14 14 C 1.46900 * 111.00375 * 203.99155 * 13 3 2 15 15 H 1.09005 * 109.51427 * 325.23699 * 14 13 3 16 16 C 1.53116 * 109.52288 * 85.42236 * 14 13 3 17 17 C 1.53045 * 109.27648 * 177.56180 * 16 14 13 18 18 N 1.46846 * 109.52441 * 300.82238 * 17 16 14 19 19 C 1.46845 * 111.19477 * 61.74087 * 18 17 16 20 20 C 1.53036 * 109.52874 * 298.25707 * 19 18 17 21 21 H 1.09007 * 109.50158 * 299.24212 * 20 19 18 22 22 F 1.39898 * 109.53773 * 179.14135 * 20 19 18 23 23 H 1.09002 * 109.46488 * 54.92950 * 1 2 3 24 24 H 1.08997 * 109.47474 * 174.92482 * 1 2 3 25 25 H 1.09001 * 109.47653 * 294.93212 * 1 2 3 26 26 H 1.09011 * 109.46850 * 119.99474 * 2 1 3 27 27 H 1.08997 * 109.47738 * 239.99385 * 2 1 3 28 28 H 0.97002 * 119.99967 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99752 * 80.03336 * 13 3 2 30 30 H 1.08999 * 109.50527 * 297.50547 * 16 14 13 31 31 H 1.08997 * 109.50395 * 57.62780 * 16 14 13 32 32 H 1.08998 * 109.45813 * 180.80800 * 17 16 14 33 33 H 1.08998 * 109.46023 * 60.83875 * 17 16 14 34 34 H 1.00900 * 111.00020 * 185.83900 * 18 17 16 35 35 H 1.09000 * 109.45985 * 178.24144 * 19 18 17 36 36 H 1.08992 * 109.46483 * 58.27462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9769 -0.8514 5 6 3.5436 1.4437 -0.1007 6 1 4.1369 1.8925 0.6821 7 6 4.1618 0.8717 -1.1924 8 7 3.4394 0.3255 -2.1460 9 14 6.0257 0.8725 -1.3169 10 1 6.5649 -0.3561 -0.6804 11 1 6.4263 0.9060 -2.7464 12 1 6.5677 2.0682 -0.6228 13 7 1.6322 2.1061 1.2454 14 6 1.5793 3.5639 1.0724 15 1 2.3669 3.8781 0.3874 16 6 0.2151 3.9624 0.5028 17 6 0.1437 5.4864 0.3818 18 7 0.3381 6.0934 1.7047 19 6 1.6605 5.7633 2.2511 20 6 1.7772 4.2477 2.4280 21 1 1.0131 3.9027 3.1246 22 9 3.0441 3.9315 2.9301 23 1 -0.3632 0.5905 -0.8411 24 1 -0.3634 -1.0236 -0.0909 25 1 -0.3634 0.4332 0.9319 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.8743 -0.0772 -2.9138 29 1 2.2448 1.8543 2.0067 30 1 0.0863 3.5128 -0.4818 31 1 -0.5736 3.6130 1.1690 32 1 -0.8319 5.7742 -0.0100 33 1 0.9239 5.8339 -0.2954 34 1 0.2010 7.0923 1.6679 35 1 1.7867 6.2524 3.2170 36 1 2.4336 6.1095 1.5652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246084604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:41 Heat of formation + Delta-G solvation = -64.170455 kcal Electronic energy + Delta-G solvation = -17201.339675 eV Core-core repulsion = 14440.790134 eV Total energy + Delta-G solvation = -2760.549541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.25718 -38.22291 -35.77173 -32.73849 -31.31454 -30.14848 -28.86189 -26.01043 -23.24779 -22.61865 -21.93230 -19.61007 -19.36511 -16.86387 -16.53737 -15.66377 -15.05004 -14.84975 -14.44566 -14.20521 -13.89523 -13.37163 -13.18630 -12.68852 -12.44844 -12.13138 -11.85803 -11.37973 -11.26104 -11.14143 -10.94318 -10.74982 -10.56971 -10.48798 -10.13503 -9.88361 -9.57036 -9.40013 -9.02464 -8.50721 -8.36447 -7.30754 -5.98942 -4.11180 3.27814 3.34684 3.38783 4.12295 4.40898 4.76423 4.85311 5.13915 5.16039 5.26175 5.35267 5.49755 5.60923 5.77763 5.93661 6.06179 6.12898 6.26877 6.41281 6.50569 6.53335 6.72496 6.79860 6.99882 7.12506 7.18161 7.31467 7.44846 7.59739 7.79218 8.07819 8.16157 8.32076 8.64774 9.01131 9.56436 11.01227 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.009023 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.273268 B = 3102.481056 C = 3633.929641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.070 3.930 15 H 0.054 0.946 16 C -0.101 4.101 17 C 0.053 3.947 18 N -0.685 5.685 19 C 0.037 3.963 20 C 0.091 3.909 21 H 0.092 0.908 22 F -0.212 7.212 23 H 0.036 0.964 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.332 0.668 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.343 0.657 35 H 0.081 0.919 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 8.823 5.362 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.041 4.041 15 H 0.072 0.928 16 C -0.139 4.139 17 C -0.076 4.076 18 N -0.316 5.316 19 C -0.094 4.094 20 C 0.054 3.946 21 H 0.110 0.890 22 F -0.193 7.193 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.161 0.839 35 H 0.099 0.901 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.620 8.108 5.395 11.776 hybrid contribution 2.771 0.734 -0.746 2.962 sum -3.849 8.843 4.649 10.706 Atomic orbital electron populations 1.21685 0.98935 0.98267 1.00368 1.21498 0.92120 0.99173 1.01728 1.19180 0.92641 0.91114 0.86205 0.94936 1.21911 0.92770 1.37798 1.05891 0.92730 1.24923 0.97939 0.95021 0.95625 1.69877 1.34845 1.38106 1.09606 0.86667 0.86198 0.78485 0.77103 1.20598 1.21248 1.20058 1.60990 1.56690 1.03758 1.09792 1.21903 0.97255 0.91175 0.93812 0.92789 1.21538 0.97537 0.92781 1.02076 1.22058 1.00628 0.96149 0.88783 1.60175 1.29444 1.16113 1.25879 1.22401 0.90571 0.95924 1.00475 1.21744 0.81162 0.94458 0.97257 0.89021 1.92796 1.43534 1.93926 1.89020 0.94482 0.95699 0.93431 0.95094 0.89154 0.92930 0.85064 0.90784 0.90764 0.90577 0.95040 0.83876 0.90104 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.15 0.36 -2.41 16 2 C -0.11 -2.56 5.44 -26.73 -0.15 -2.71 16 3 C 0.22 5.34 1.81 -68.87 -0.12 5.21 16 4 H 0.03 0.88 7.17 -51.93 -0.37 0.51 16 5 C -0.54 -14.88 8.22 -34.44 -0.28 -15.17 16 6 H 0.05 1.52 7.76 -52.49 -0.41 1.12 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.08 11.30 55.43 0.63 -24.46 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.42 5.56 -100.83 -0.56 -14.98 16 14 C 0.07 1.31 2.13 -67.59 -0.14 1.17 16 15 H 0.05 1.18 7.60 -51.93 -0.39 0.78 16 16 C -0.10 -1.64 5.58 -26.65 -0.15 -1.78 16 17 C 0.05 0.70 6.55 -3.83 -0.03 0.68 16 18 N -0.68 -8.33 6.85 -113.82 -0.78 -9.10 16 19 C 0.04 0.50 6.29 -3.84 -0.02 0.47 16 20 C 0.09 1.49 3.51 -26.65 -0.09 1.39 16 21 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 22 F -0.21 -3.95 16.48 2.25 0.04 -3.92 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 7.26 7.58 -39.29 -0.30 6.96 16 30 H 0.07 1.30 7.48 -51.93 -0.39 0.91 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.34 3.28 8.90 -39.29 -0.35 2.93 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -28.03 287.52 -7.95 -35.98 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.87 Total: 7.05 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.72 Total: -11.39 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.71 Total: -48.54 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.03 -7.95 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.190 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds