Wall clock time and date at job start Sun Mar 29 2020 21:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47500 * 2 1 4 4 H 1.09004 * 109.46584 * 304.06513 * 3 2 1 5 5 C 1.50697 * 109.47406 * 184.06586 * 3 2 1 6 6 H 1.07999 * 119.99953 * 239.99611 * 5 3 2 7 7 C 1.37881 * 119.99736 * 59.99582 * 5 3 2 8 8 N 1.31511 * 120.00298 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99528 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47202 * 90.00045 * 9 7 5 11 11 H 1.48498 * 109.47031 * 209.99942 * 9 7 5 12 12 H 1.48500 * 109.47402 * 330.00065 * 9 7 5 13 13 N 1.46896 * 109.47281 * 64.06234 * 3 2 1 14 14 C 1.46900 * 111.00375 * 203.99155 * 13 3 2 15 15 H 1.09005 * 109.51427 * 325.23699 * 14 13 3 16 16 C 1.53116 * 109.52288 * 85.42236 * 14 13 3 17 17 C 1.53045 * 109.27648 * 177.56180 * 16 14 13 18 18 N 1.46846 * 109.52441 * 300.82238 * 17 16 14 19 19 C 1.46845 * 111.19477 * 61.74087 * 18 17 16 20 20 C 1.53036 * 109.52874 * 298.25707 * 19 18 17 21 21 H 1.09007 * 109.50158 * 299.24212 * 20 19 18 22 22 F 1.39898 * 109.53773 * 179.14135 * 20 19 18 23 23 H 1.09002 * 109.46488 * 54.92950 * 1 2 3 24 24 H 1.08997 * 109.47474 * 174.92482 * 1 2 3 25 25 H 1.09001 * 109.47653 * 294.93212 * 1 2 3 26 26 H 1.09011 * 109.46850 * 119.99474 * 2 1 3 27 27 H 1.08997 * 109.47738 * 239.99385 * 2 1 3 28 28 H 0.97002 * 119.99967 * 180.02562 * 8 7 5 29 29 H 1.00900 * 110.99752 * 80.03336 * 13 3 2 30 30 H 1.08999 * 109.50527 * 297.50547 * 16 14 13 31 31 H 1.08997 * 109.50395 * 57.62780 * 16 14 13 32 32 H 1.08998 * 109.45813 * 180.80800 * 17 16 14 33 33 H 1.08998 * 109.46023 * 60.83875 * 17 16 14 34 34 H 1.00900 * 111.00020 * 185.83900 * 18 17 16 35 35 H 1.09000 * 109.45985 * 178.24144 * 19 18 17 36 36 H 1.08992 * 109.46483 * 58.27462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9769 -0.8514 5 6 3.5436 1.4437 -0.1007 6 1 4.1369 1.8925 0.6821 7 6 4.1618 0.8717 -1.1924 8 7 3.4394 0.3255 -2.1460 9 14 6.0257 0.8725 -1.3169 10 1 6.5649 -0.3561 -0.6804 11 1 6.4263 0.9060 -2.7464 12 1 6.5677 2.0682 -0.6228 13 7 1.6322 2.1061 1.2454 14 6 1.5793 3.5639 1.0724 15 1 2.3669 3.8781 0.3874 16 6 0.2151 3.9624 0.5028 17 6 0.1437 5.4864 0.3818 18 7 0.3381 6.0934 1.7047 19 6 1.6605 5.7633 2.2511 20 6 1.7772 4.2477 2.4280 21 1 1.0131 3.9027 3.1246 22 9 3.0441 3.9315 2.9301 23 1 -0.3632 0.5905 -0.8411 24 1 -0.3634 -1.0236 -0.0909 25 1 -0.3634 0.4332 0.9319 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.8743 -0.0772 -2.9138 29 1 2.2448 1.8543 2.0067 30 1 0.0863 3.5128 -0.4818 31 1 -0.5736 3.6130 1.1690 32 1 -0.8319 5.7742 -0.0100 33 1 0.9239 5.8339 -0.2954 34 1 0.2010 7.0923 1.6679 35 1 1.7867 6.2524 3.2170 36 1 2.4336 6.1095 1.5652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246084604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:41 Heat of formation + Delta-G solvation = -83.904070 kcal Electronic energy + Delta-G solvation = -17202.195388 eV Core-core repulsion = 14440.790134 eV Total energy + Delta-G solvation = -2761.405255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.68353 -39.56528 -37.46790 -34.54146 -33.16435 -31.36409 -30.41616 -27.93283 -24.99124 -23.90405 -23.41394 -21.33372 -20.90280 -18.71529 -17.96204 -17.11073 -16.81767 -16.35383 -15.90997 -15.66872 -15.22917 -14.94185 -14.86330 -14.35606 -13.99379 -13.53978 -13.30868 -13.20407 -13.08641 -12.97958 -12.61254 -12.30885 -12.21029 -11.99691 -11.79700 -11.53151 -11.45403 -11.16664 -10.89553 -10.48182 -9.53307 -9.15288 -8.09315 -6.30622 1.33626 1.35325 1.44526 2.36735 3.07661 3.10283 3.38842 3.57024 3.80858 3.88219 4.06918 4.29209 4.41314 4.55195 4.60676 4.68613 4.71948 4.76437 4.89182 4.96001 4.96587 5.13195 5.17508 5.37060 5.42833 5.51666 5.62626 5.75464 5.89084 6.08676 6.16285 6.33449 6.46355 6.74106 6.94759 7.40247 8.87301 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.009023 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.273268 B = 3102.481056 C = 3633.929641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.561 4.561 6 H 0.042 0.958 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.068 3.932 15 H 0.016 0.984 16 C -0.094 4.094 17 C 0.059 3.941 18 N -0.677 5.677 19 C 0.043 3.957 20 C 0.091 3.909 21 H 0.104 0.896 22 F -0.227 7.227 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.263 0.737 29 H 0.327 0.673 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.364 0.636 35 H 0.107 0.893 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 9.911 6.220 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.022 0.978 5 C -0.600 4.600 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.202 1.202 13 N -0.301 5.301 14 C -0.043 4.043 15 H 0.034 0.966 16 C -0.133 4.133 17 C -0.070 4.070 18 N -0.311 5.311 19 C -0.087 4.087 20 C 0.054 3.946 21 H 0.122 0.878 22 F -0.208 7.208 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.042 0.958 34 H 0.185 0.815 35 H 0.125 0.875 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.307 9.220 6.260 13.326 hybrid contribution 2.967 0.402 -1.009 3.159 sum -4.340 9.622 5.251 11.789 Atomic orbital electron populations 1.21532 0.96017 0.99602 1.00770 1.21365 0.94706 0.98174 0.99966 1.18925 0.91150 0.91520 0.86664 0.97789 1.22154 0.94278 1.37834 1.05764 0.94015 1.25612 1.02004 0.94776 0.95391 1.69988 1.36321 1.38426 1.09907 0.85739 0.81331 0.78388 0.77274 1.19971 1.20502 1.20204 1.60969 1.55736 1.05395 1.08004 1.22004 0.97675 0.89703 0.94965 0.96572 1.21460 0.95785 0.95265 1.00775 1.21986 1.01932 0.93716 0.89390 1.60125 1.28375 1.17685 1.24928 1.22335 0.91066 0.93532 1.01793 1.21868 0.80635 0.96505 0.95611 0.87842 1.92766 1.44683 1.94246 1.89079 0.94815 0.93737 0.92329 0.95607 0.92028 0.92790 0.85647 0.92768 0.90196 0.87878 0.95765 0.81517 0.87506 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.73 71.98 0.70 -4.21 16 2 C -0.10 -5.05 5.44 30.59 0.17 -4.88 16 3 C 0.23 11.47 1.81 44.17 0.08 11.55 16 4 H 0.00 0.23 7.17 -2.38 -0.02 0.22 16 5 C -0.56 -31.51 8.22 25.60 0.21 -31.30 16 6 H 0.04 2.40 7.76 -2.91 -0.02 2.37 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -52.34 11.30 21.45 0.24 -52.10 16 9 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.67 -28.82 5.56 -472.91 -2.63 -31.44 16 14 C 0.07 2.56 2.13 44.99 0.10 2.65 16 15 H 0.02 0.73 7.60 -2.38 -0.02 0.72 16 16 C -0.09 -3.00 5.58 30.65 0.17 -2.83 16 17 C 0.06 1.45 6.55 86.33 0.57 2.01 16 18 N -0.68 -14.43 6.85 -514.02 -3.52 -17.95 16 19 C 0.04 1.07 6.29 86.33 0.54 1.61 16 20 C 0.09 2.87 3.51 30.65 0.11 2.98 16 21 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 22 F -0.23 -8.38 16.48 44.97 0.74 -7.64 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 2.21 7.87 -2.39 -0.02 2.19 16 26 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 3.37 5.97 -2.39 -0.01 3.36 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.33 14.50 7.58 -89.69 -0.68 13.82 16 30 H 0.05 1.93 7.48 -2.39 -0.02 1.91 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.36 5.58 8.90 -89.69 -0.80 4.78 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -60.85 287.52 -0.46 -61.31 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.41 Total: 21.87 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.09 Total: -20.70 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -5.90 Total: -101.49 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.74 Total: -7.64 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -60.85 -0.46 -61.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246084604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.591 kcal (2) G-P(sol) polarization free energy of solvation -60.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds