Wall clock time and date at job start Sun Mar 29 2020 21:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 H 1.09003 * 109.46955 * 55.49785 * 3 2 1 5 5 C 1.50705 * 109.46894 * 175.48955 * 3 2 1 6 6 H 1.08005 * 119.99558 * 120.00500 * 5 3 2 7 7 C 1.37877 * 120.00380 * 299.99965 * 5 3 2 8 8 N 1.31509 * 119.99938 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99740 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47045 * 90.00108 * 9 7 5 11 11 H 1.48503 * 109.47068 * 209.99770 * 9 7 5 12 12 H 1.48498 * 109.47450 * 330.00014 * 9 7 5 13 13 N 1.46898 * 109.47187 * 295.49384 * 3 2 1 14 14 C 1.46894 * 111.00074 * 155.09563 * 13 3 2 15 15 H 1.09002 * 109.52749 * 30.68616 * 14 13 3 16 16 C 1.53120 * 109.52752 * 150.81536 * 14 13 3 17 17 C 1.53038 * 109.28304 * 177.55731 * 16 14 13 18 18 N 1.46847 * 109.52141 * 300.82262 * 17 16 14 19 19 C 1.46848 * 111.20157 * 61.74089 * 18 17 16 20 20 C 1.53046 * 109.52272 * 298.25900 * 19 18 17 21 21 H 1.09002 * 109.50109 * 299.23983 * 20 19 18 22 22 F 1.39893 * 109.50092 * 179.11652 * 20 19 18 23 23 H 1.09004 * 109.46713 * 295.59563 * 1 2 3 24 24 H 1.08993 * 109.46938 * 55.58798 * 1 2 3 25 25 H 1.08995 * 109.47389 * 175.59599 * 1 2 3 26 26 H 1.09002 * 109.47240 * 240.00007 * 2 1 3 27 27 H 1.09001 * 109.47159 * 120.00430 * 2 1 3 28 28 H 0.96996 * 119.99871 * 180.02562 * 8 7 5 29 29 H 1.00899 * 110.99688 * 279.04696 * 13 3 2 30 30 H 1.08997 * 109.49941 * 297.50256 * 16 14 13 31 31 H 1.09006 * 109.49983 * 57.61561 * 16 14 13 32 32 H 1.08999 * 109.45834 * 60.83433 * 17 16 14 33 33 H 1.08991 * 109.46204 * 180.80572 * 17 16 14 34 34 H 1.00899 * 111.00263 * 297.64436 * 18 17 16 35 35 H 1.08998 * 109.46012 * 58.26873 * 19 18 17 36 36 H 1.08997 * 109.46580 * 178.24248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6124 1.9790 0.8469 5 6 3.5430 1.4438 0.1117 6 1 4.1420 1.8906 -0.6680 7 6 4.1532 0.8747 1.2093 8 7 5.4647 0.8763 1.3070 9 14 3.1171 0.1014 2.5576 10 1 2.8938 -1.3338 2.2486 11 1 3.8249 0.2235 3.8574 12 1 1.8091 0.7996 2.6388 13 7 1.6413 2.1028 -1.2501 14 6 1.5662 3.5594 -1.0753 15 1 2.2910 3.8741 -0.3245 16 6 1.8748 4.2512 -2.4060 17 6 1.7354 5.7653 -2.2327 18 7 0.3695 6.0859 -1.7990 19 6 0.0667 5.4712 -0.5002 20 6 0.1563 3.9482 -0.6218 21 1 -0.5710 3.5983 -1.3544 22 9 -0.1125 3.3640 0.6205 23 1 -0.3633 0.4440 0.9269 24 1 -0.3633 0.5807 -0.8478 25 1 -0.3634 -1.0246 -0.0789 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.8940 0.4756 2.0790 29 1 2.2682 1.8608 -2.0028 30 1 2.8930 4.0122 -2.7127 31 1 1.1744 3.9059 -3.1666 32 1 2.4455 6.1118 -1.4819 33 1 1.9405 6.2599 -3.1820 34 1 -0.3055 5.8093 -2.4961 35 1 0.7847 5.8191 0.2424 36 1 -0.9401 5.7522 -0.1913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246090413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:43 Heat of formation + Delta-G solvation = -56.711270 kcal Electronic energy + Delta-G solvation = -17431.582916 eV Core-core repulsion = 14671.356829 eV Total energy + Delta-G solvation = -2760.226086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.11364 -38.52413 -36.05747 -32.73356 -31.81932 -30.23497 -28.84374 -26.41018 -23.02258 -22.78104 -22.10229 -20.31250 -19.71727 -16.99195 -16.14646 -15.70635 -15.35271 -15.13792 -14.88723 -14.23694 -13.60660 -13.58120 -13.07559 -12.78486 -12.56587 -12.17306 -12.01428 -11.90188 -11.60402 -11.50193 -11.01693 -10.91315 -10.70184 -10.66581 -10.19549 -10.06415 -9.67089 -9.45159 -9.19470 -8.59704 -8.42373 -7.46585 -6.13540 -4.14347 3.27290 3.38315 3.43524 4.20249 4.38427 4.58848 4.84903 4.97013 5.04954 5.20530 5.28350 5.41878 5.49622 5.60428 5.82932 5.90811 6.02119 6.08060 6.10262 6.15243 6.16739 6.32493 6.56008 6.75536 6.79204 6.91341 7.01107 7.14961 7.26633 7.29184 7.55751 7.97612 8.32827 8.45351 8.87527 9.50625 10.99274 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.009369 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.251484 B = 2987.854487 C = 3318.201306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.179 3.821 4 H 0.046 0.954 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.261 1.261 13 N -0.675 5.675 14 C 0.065 3.935 15 H 0.065 0.935 16 C -0.156 4.156 17 C 0.055 3.945 18 N -0.678 5.678 19 C 0.032 3.968 20 C 0.072 3.928 21 H 0.076 0.924 22 F -0.205 7.205 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.336 0.664 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.340 0.660 35 H 0.083 0.917 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 6.807 -5.980 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.070 3.930 4 H 0.063 0.937 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.186 1.186 13 N -0.304 5.304 14 C -0.046 4.046 15 H 0.083 0.917 16 C -0.195 4.195 17 C -0.075 4.075 18 N -0.306 5.306 19 C -0.099 4.099 20 C 0.033 3.967 21 H 0.094 0.906 22 F -0.186 7.186 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.580 7.264 -5.458 13.946 hybrid contribution 0.581 -1.438 0.665 1.687 sum -9.998 5.826 -4.793 12.526 Atomic orbital electron populations 1.21706 0.97499 0.99162 1.01467 1.21791 0.93930 0.99346 1.00178 1.19740 0.94066 0.90759 0.88421 0.93664 1.21737 0.90513 1.39026 1.07278 0.91161 1.24983 0.94753 0.95270 0.97917 1.69913 1.08599 1.45012 1.30109 0.86839 0.80813 0.79875 0.80739 1.20500 1.22594 1.18606 1.60753 1.55866 1.04588 1.09202 1.21925 0.94811 0.90945 0.96919 0.91664 1.22468 1.02991 0.96552 0.97521 1.22089 0.90471 0.93641 1.01333 1.60690 1.04309 1.60904 1.04706 1.22675 1.02993 0.91191 0.93052 1.22487 0.98602 0.93162 0.82469 0.90611 1.92787 1.95094 1.85972 1.44744 0.94053 0.92094 0.95016 0.92696 0.93792 0.92654 0.84605 0.90610 0.91423 0.90488 0.90413 0.84250 0.89831 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.85 37.16 0.37 -2.36 16 2 C -0.11 -2.57 5.11 -26.73 -0.14 -2.71 16 3 C 0.18 4.22 1.22 -68.87 -0.08 4.14 16 4 H 0.05 1.16 5.35 -51.93 -0.28 0.88 16 5 C -0.55 -15.12 8.87 -34.44 -0.31 -15.42 16 6 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 7 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 9 Si 0.89 22.55 24.41 -169.99 -4.15 18.40 16 10 H -0.28 -6.89 6.83 56.52 0.39 -6.51 16 11 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 13 N -0.67 -13.24 5.42 -100.83 -0.55 -13.79 16 14 C 0.07 1.13 2.25 -67.59 -0.15 0.98 16 15 H 0.07 1.35 7.60 -51.93 -0.39 0.96 16 16 C -0.16 -2.10 5.30 -26.65 -0.14 -2.24 16 17 C 0.05 0.64 6.55 -3.83 -0.03 0.62 16 18 N -0.68 -7.75 6.87 -113.82 -0.78 -8.53 16 19 C 0.03 0.41 6.29 -3.83 -0.02 0.39 16 20 C 0.07 1.12 3.65 -26.64 -0.10 1.03 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 22 F -0.21 -3.94 15.30 2.25 0.03 -3.91 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.13 7.62 -51.93 -0.40 0.74 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.04 1.05 3.22 -51.93 -0.17 0.89 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 29 H 0.34 6.57 8.00 -39.29 -0.31 6.26 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.34 3.33 8.86 -39.29 -0.35 2.98 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 279.31 15.07 4.21 4.21 Total: -1.00 -29.99 279.31 -6.88 -36.87 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.73 Total: 7.02 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.70 Total: -13.55 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.55 Total: -49.04 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.91 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.15 Total: 18.40 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.99 -6.88 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246090413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.840 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds