Wall clock time and date at job start Sun Mar 29 2020 21:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 H 1.09003 * 109.46955 * 55.49785 * 3 2 1 5 5 C 1.50705 * 109.46894 * 175.48955 * 3 2 1 6 6 H 1.08005 * 119.99558 * 120.00500 * 5 3 2 7 7 C 1.37877 * 120.00380 * 299.99965 * 5 3 2 8 8 N 1.31509 * 119.99938 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99740 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47045 * 90.00108 * 9 7 5 11 11 H 1.48503 * 109.47068 * 209.99770 * 9 7 5 12 12 H 1.48498 * 109.47450 * 330.00014 * 9 7 5 13 13 N 1.46898 * 109.47187 * 295.49384 * 3 2 1 14 14 C 1.46894 * 111.00074 * 155.09563 * 13 3 2 15 15 H 1.09002 * 109.52749 * 30.68616 * 14 13 3 16 16 C 1.53120 * 109.52752 * 150.81536 * 14 13 3 17 17 C 1.53038 * 109.28304 * 177.55731 * 16 14 13 18 18 N 1.46847 * 109.52141 * 300.82262 * 17 16 14 19 19 C 1.46848 * 111.20157 * 61.74089 * 18 17 16 20 20 C 1.53046 * 109.52272 * 298.25900 * 19 18 17 21 21 H 1.09002 * 109.50109 * 299.23983 * 20 19 18 22 22 F 1.39893 * 109.50092 * 179.11652 * 20 19 18 23 23 H 1.09004 * 109.46713 * 295.59563 * 1 2 3 24 24 H 1.08993 * 109.46938 * 55.58798 * 1 2 3 25 25 H 1.08995 * 109.47389 * 175.59599 * 1 2 3 26 26 H 1.09002 * 109.47240 * 240.00007 * 2 1 3 27 27 H 1.09001 * 109.47159 * 120.00430 * 2 1 3 28 28 H 0.96996 * 119.99871 * 180.02562 * 8 7 5 29 29 H 1.00899 * 110.99688 * 279.04696 * 13 3 2 30 30 H 1.08997 * 109.49941 * 297.50256 * 16 14 13 31 31 H 1.09006 * 109.49983 * 57.61561 * 16 14 13 32 32 H 1.08999 * 109.45834 * 60.83433 * 17 16 14 33 33 H 1.08991 * 109.46204 * 180.80572 * 17 16 14 34 34 H 1.00899 * 111.00263 * 297.64436 * 18 17 16 35 35 H 1.08998 * 109.46012 * 58.26873 * 19 18 17 36 36 H 1.08997 * 109.46580 * 178.24248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6124 1.9790 0.8469 5 6 3.5430 1.4438 0.1117 6 1 4.1420 1.8906 -0.6680 7 6 4.1532 0.8747 1.2093 8 7 5.4647 0.8763 1.3070 9 14 3.1171 0.1014 2.5576 10 1 2.8938 -1.3338 2.2486 11 1 3.8249 0.2235 3.8574 12 1 1.8091 0.7996 2.6388 13 7 1.6413 2.1028 -1.2501 14 6 1.5662 3.5594 -1.0753 15 1 2.2910 3.8741 -0.3245 16 6 1.8748 4.2512 -2.4060 17 6 1.7354 5.7653 -2.2327 18 7 0.3695 6.0859 -1.7990 19 6 0.0667 5.4712 -0.5002 20 6 0.1563 3.9482 -0.6218 21 1 -0.5710 3.5983 -1.3544 22 9 -0.1125 3.3640 0.6205 23 1 -0.3633 0.4440 0.9269 24 1 -0.3633 0.5807 -0.8478 25 1 -0.3634 -1.0246 -0.0789 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 5.8940 0.4756 2.0790 29 1 2.2682 1.8608 -2.0028 30 1 2.8930 4.0122 -2.7127 31 1 1.1744 3.9059 -3.1666 32 1 2.4455 6.1118 -1.4819 33 1 1.9405 6.2599 -3.1820 34 1 -0.3055 5.8093 -2.4961 35 1 0.7847 5.8191 0.2424 36 1 -0.9401 5.7522 -0.1913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246090413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:43 Heat of formation + Delta-G solvation = -80.011347 kcal Electronic energy + Delta-G solvation = -17432.593283 eV Core-core repulsion = 14671.356829 eV Total energy + Delta-G solvation = -2761.236454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.51266 -39.76167 -37.70493 -34.53265 -33.64965 -31.35438 -30.33643 -28.24840 -24.61111 -24.02598 -23.48414 -21.75752 -21.36585 -19.09275 -17.36480 -17.23076 -16.88413 -16.54930 -16.21464 -15.69216 -15.24000 -15.19826 -14.70252 -14.33481 -14.08330 -13.68347 -13.64275 -13.19710 -13.09744 -12.98952 -12.68431 -12.52953 -12.21839 -12.04260 -11.78998 -11.55900 -11.43132 -11.26206 -11.18630 -10.73080 -9.47891 -9.19381 -8.38807 -6.42549 1.23422 1.30063 1.40877 2.24816 2.96961 3.16618 3.31199 3.67476 3.77892 3.79857 4.03770 4.26405 4.34370 4.39703 4.44472 4.48597 4.59808 4.73629 4.75979 4.92091 4.97308 4.99172 5.04912 5.11536 5.22149 5.33105 5.40423 5.48967 5.59878 5.89071 6.02161 6.33001 6.44720 6.57274 6.73561 7.26373 8.77309 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.009369 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.251484 B = 2987.854487 C = 3318.201306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.028 0.972 5 C -0.544 4.544 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.255 1.255 13 N -0.663 5.663 14 C 0.061 3.939 15 H 0.021 0.979 16 C -0.145 4.145 17 C 0.060 3.940 18 N -0.670 5.670 19 C 0.041 3.959 20 C 0.070 3.930 21 H 0.096 0.904 22 F -0.227 7.227 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.335 0.665 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.356 0.644 35 H 0.067 0.933 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 7.049 -6.896 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C 0.079 3.921 4 H 0.046 0.954 5 C -0.583 4.583 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.772 3.228 10 H -0.190 1.190 11 H -0.226 1.226 12 H -0.179 1.179 13 N -0.291 5.291 14 C -0.050 4.050 15 H 0.039 0.961 16 C -0.185 4.185 17 C -0.070 4.070 18 N -0.299 5.299 19 C -0.090 4.090 20 C 0.031 3.969 21 H 0.114 0.886 22 F -0.208 7.208 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.061 7.517 -6.400 16.373 hybrid contribution 1.396 -1.441 0.860 2.183 sum -11.666 6.076 -5.540 14.272 Atomic orbital electron populations 1.21600 0.94646 1.01000 1.01526 1.21745 0.96458 0.97752 0.99544 1.19511 0.90957 0.92068 0.89609 0.95433 1.22072 0.92781 1.37452 1.05972 0.94610 1.25774 0.95695 0.96165 1.00366 1.70042 1.10341 1.46827 1.31179 0.85899 0.79328 0.79719 0.77814 1.18993 1.22610 1.17947 1.60775 1.54957 1.06067 1.07340 1.22046 0.95270 0.89665 0.98062 0.96080 1.22419 1.02915 0.97586 0.95573 1.22077 0.90456 0.92239 1.02246 1.60674 1.04437 1.60241 1.04513 1.22596 1.03766 0.89035 0.93630 1.22720 0.97407 0.94961 0.81769 0.88609 1.92743 1.95127 1.86552 1.46337 0.94610 0.91271 0.92407 0.92544 0.95223 0.92556 0.84702 0.91658 0.89269 0.92105 0.87595 0.82501 0.91469 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.85 71.98 0.71 -3.98 16 2 C -0.12 -5.10 5.11 30.59 0.16 -4.94 16 3 C 0.19 8.90 1.22 44.17 0.05 8.96 16 4 H 0.03 1.42 5.35 -2.39 -0.01 1.41 16 5 C -0.54 -30.97 8.87 25.60 0.23 -30.74 16 6 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 7 C 0.02 1.09 5.45 84.66 0.46 1.55 16 8 N -0.94 -59.50 13.96 21.45 0.30 -59.21 16 9 Si 0.94 46.96 24.41 68.60 1.67 48.63 16 10 H -0.26 -12.44 6.83 99.48 0.68 -11.76 16 11 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 12 H -0.26 -12.31 6.53 99.48 0.65 -11.66 16 13 N -0.66 -25.73 5.42 -472.91 -2.56 -28.29 16 14 C 0.06 2.09 2.25 45.00 0.10 2.19 16 15 H 0.02 0.91 7.60 -2.39 -0.02 0.89 16 16 C -0.15 -3.70 5.30 30.65 0.16 -3.54 16 17 C 0.06 1.28 6.55 86.33 0.57 1.85 16 18 N -0.67 -13.33 6.87 -514.01 -3.53 -16.86 16 19 C 0.04 0.98 6.29 86.33 0.54 1.52 16 20 C 0.07 2.08 3.65 30.65 0.11 2.19 16 21 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 22 F -0.23 -8.49 15.30 44.97 0.69 -7.80 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 2.36 7.62 -2.39 -0.02 2.34 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.03 1.37 3.22 -2.39 -0.01 1.37 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.34 13.08 8.00 -89.69 -0.72 12.36 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.36 5.51 8.86 -89.69 -0.79 4.71 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -66.07 279.31 -0.86 -66.93 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.52 Total: 21.54 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 3.09 Total: -24.95 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -5.79 Total: -104.36 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.69 Total: -7.80 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.67 Total: 48.63 kcal Total: -66.07 -0.86 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246090413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.077 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds