Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 H 1.08995 * 109.47310 * 54.30216 * 3 2 1 5 5 C 1.50703 * 109.46633 * 174.29874 * 3 2 1 6 6 H 1.07998 * 120.00462 * 116.28028 * 5 3 2 7 7 C 1.37876 * 119.99898 * 296.27722 * 5 3 2 8 8 N 1.31512 * 120.00203 * 353.34304 * 7 5 3 9 9 Si 1.86804 * 120.00052 * 173.34456 * 7 5 3 10 10 H 1.48505 * 109.46891 * 269.99885 * 9 7 5 11 11 H 1.48500 * 109.47002 * 29.99890 * 9 7 5 12 12 H 1.48498 * 109.47235 * 150.00324 * 9 7 5 13 13 N 1.46898 * 109.47304 * 294.29442 * 3 2 1 14 14 C 1.46895 * 111.00189 * 154.37772 * 13 3 2 15 15 H 1.09006 * 109.50267 * 36.06502 * 14 13 3 16 16 C 1.53031 * 109.50358 * 275.98518 * 14 13 3 17 17 N 1.46854 * 109.52533 * 180.92028 * 16 14 13 18 18 C 1.46846 * 111.23075 * 61.67614 * 17 16 14 19 19 C 1.53030 * 109.52865 * 298.28431 * 18 17 16 20 20 C 1.53118 * 109.50347 * 156.13840 * 14 13 3 21 21 H 1.08997 * 109.52659 * 297.50284 * 20 14 13 22 22 F 1.39904 * 109.52414 * 57.69361 * 20 14 13 23 23 H 1.09010 * 109.47063 * 305.08189 * 1 2 3 24 24 H 1.09003 * 109.47575 * 65.08184 * 1 2 3 25 25 H 1.08998 * 109.47083 * 185.09022 * 1 2 3 26 26 H 1.08997 * 109.46786 * 240.00157 * 2 1 3 27 27 H 1.09000 * 109.47054 * 120.00003 * 2 1 3 28 28 H 0.97005 * 120.00181 * 355.23552 * 8 7 5 29 29 H 1.00900 * 111.00197 * 278.33516 * 13 3 2 30 30 H 1.09001 * 109.46571 * 300.89080 * 16 14 13 31 31 H 1.09001 * 109.46629 * 60.86248 * 16 14 13 32 32 H 1.00894 * 110.99509 * 185.80188 * 17 16 14 33 33 H 1.09000 * 109.46103 * 178.26037 * 18 17 16 34 34 H 1.09006 * 109.44824 * 58.29192 * 18 17 16 35 35 H 1.09005 * 109.50159 * 299.23754 * 19 18 17 36 36 H 1.09000 * 109.50750 * 179.11910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5956 1.9850 0.8345 5 6 3.5403 1.4449 0.1412 6 1 4.1572 1.8318 -0.6564 7 6 4.1255 0.9530 1.2886 8 7 3.3761 0.6037 2.3113 9 14 5.9830 0.7829 1.3906 10 1 6.3841 -0.5626 0.9067 11 1 6.6225 1.8236 0.5462 12 1 6.4189 0.9522 2.8000 13 7 1.6659 2.0941 -1.2623 14 6 1.5706 3.5504 -1.0950 15 1 2.3376 3.8876 -0.3976 16 6 0.1880 3.9125 -0.5481 17 7 0.0845 5.3701 -0.4014 18 6 0.2301 6.0465 -1.6966 19 6 1.6142 5.7480 -2.2769 20 6 1.7747 4.2350 -2.4493 21 1 2.7751 4.0149 -2.8218 22 9 0.8218 3.7646 -3.3593 23 1 -0.3634 0.5907 0.8410 24 1 -0.3634 0.4330 -0.9320 25 1 -0.3633 -1.0236 0.0912 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4184 0.7562 2.2853 29 1 2.3141 1.8563 -1.9980 30 1 -0.5790 3.5624 -1.2389 31 1 0.0458 3.4382 0.4230 32 1 -0.7825 5.6277 0.0458 33 1 0.1180 7.1220 -1.5593 34 1 -0.5367 5.6861 -2.3825 35 1 2.3815 6.1202 -1.5979 36 1 1.7162 6.2375 -3.2455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246480730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = -65.622979 kcal Electronic energy + Delta-G solvation = -17278.408085 eV Core-core repulsion = 14517.795557 eV Total energy + Delta-G solvation = -2760.612527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.27969 -38.06329 -35.94340 -32.75942 -31.40085 -31.03503 -28.34298 -25.37348 -23.64534 -23.06338 -21.85384 -19.71362 -19.22359 -17.10926 -16.73693 -15.68273 -15.15734 -14.92250 -14.48300 -14.12565 -13.78846 -13.46294 -13.08340 -12.75153 -12.28745 -12.03613 -11.90827 -11.78195 -11.73118 -11.34305 -11.15004 -10.72813 -10.52146 -10.28778 -10.17122 -9.97537 -9.77123 -9.51743 -8.92390 -8.35186 -8.27151 -7.33561 -6.34702 -4.13350 3.40767 3.42403 3.58318 4.28079 4.49747 4.67217 4.80330 5.06331 5.13140 5.24124 5.32591 5.49172 5.61108 5.72159 5.78685 5.94044 6.05522 6.19434 6.19790 6.26134 6.39862 6.47170 6.65079 6.84924 6.93924 7.08992 7.19053 7.35181 7.48862 7.56156 7.92238 8.02745 8.40005 8.56443 8.79717 9.59592 10.97467 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.008484 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.525687 B = 3299.677962 C = 3694.699593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.627 4.627 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.064 2.936 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.285 1.285 13 N -0.676 5.676 14 C 0.075 3.925 15 H 0.070 0.930 16 C 0.072 3.928 17 N -0.692 5.692 18 C 0.059 3.941 19 C -0.141 4.141 20 C 0.089 3.911 21 H 0.078 0.922 22 F -0.210 7.210 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.273 0.727 29 H 0.333 0.667 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.087 0.913 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 8.117 -7.084 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.666 4.666 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.542 5.542 9 Si 0.892 3.108 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.211 1.211 13 N -0.306 5.306 14 C -0.037 4.037 15 H 0.088 0.912 16 C -0.057 4.057 17 N -0.323 5.323 18 C -0.071 4.071 19 C -0.180 4.180 20 C 0.052 3.948 21 H 0.096 0.904 22 F -0.191 7.191 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.758 7.532 -5.865 10.260 hybrid contribution -1.074 0.511 -1.374 1.817 sum -4.832 8.043 -7.239 11.851 Atomic orbital electron populations 1.21706 0.98309 0.98757 1.00809 1.21550 0.92856 0.99422 1.01002 1.19310 0.93905 0.90652 0.86634 0.95586 1.22623 0.92285 1.46726 1.04980 0.93484 1.25680 1.06558 0.93334 0.92227 1.70750 1.08107 1.43976 1.31319 0.83627 0.74835 0.76405 0.75891 1.21413 1.21693 1.21079 1.60708 1.55089 1.04861 1.09981 1.21819 0.97388 0.90415 0.94047 0.91164 1.21840 0.96822 0.86120 1.00955 1.60207 1.41465 1.08393 1.22260 1.21827 0.96266 0.98615 0.90367 1.22160 0.98978 0.95130 1.01710 1.21816 0.90499 0.93812 0.88689 0.90371 1.92773 1.67255 1.90131 1.68983 0.94403 0.92891 0.95211 0.93934 0.91629 0.91538 0.85009 0.94496 0.90519 0.84077 0.90812 0.94881 0.89420 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.75 37.16 0.36 -2.41 16 2 C -0.11 -2.55 5.29 -26.73 -0.14 -2.70 16 3 C 0.20 4.91 1.41 -68.86 -0.10 4.81 16 4 H 0.03 0.69 6.47 -51.93 -0.34 0.36 16 5 C -0.63 -16.84 8.25 -34.44 -0.28 -17.13 16 6 H 0.05 1.27 7.71 -52.49 -0.40 0.86 16 7 C 0.03 0.77 5.20 -17.82 -0.09 0.68 16 8 N -0.91 -26.46 12.77 55.43 0.71 -25.75 16 9 Si 1.06 24.80 29.91 -169.99 -5.08 19.72 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.68 -14.14 5.52 -100.88 -0.56 -14.70 16 14 C 0.07 1.41 2.28 -67.64 -0.15 1.25 16 15 H 0.07 1.52 7.67 -51.93 -0.40 1.12 16 16 C 0.07 1.25 5.91 -3.83 -0.02 1.23 16 17 N -0.69 -10.07 6.84 -113.82 -0.78 -10.85 16 18 C 0.06 0.76 6.44 -3.84 -0.02 0.73 16 19 C -0.14 -1.87 5.88 -26.65 -0.16 -2.03 16 20 C 0.09 1.43 3.47 -26.61 -0.09 1.33 16 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 22 F -0.21 -3.68 16.13 2.25 0.04 -3.64 16 23 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.05 1.03 7.92 -51.93 -0.41 0.62 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.69 6.14 -51.93 -0.32 1.37 16 28 H 0.27 7.95 6.16 -40.82 -0.25 7.70 16 29 H 0.33 7.03 8.03 -39.29 -0.32 6.71 16 30 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 31 H 0.08 1.44 7.38 -51.93 -0.38 1.06 16 32 H 0.34 4.20 8.90 -39.29 -0.35 3.85 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.44 7.88 -51.93 -0.41 0.03 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -28.57 285.50 -7.82 -36.39 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.74 Total: 8.75 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.70 Total: -14.23 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.63 Total: -51.30 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.57 -7.82 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246480730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.229 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds