Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 H 1.08995 * 109.47310 * 54.30216 * 3 2 1 5 5 C 1.50703 * 109.46633 * 174.29874 * 3 2 1 6 6 H 1.07998 * 120.00462 * 116.28028 * 5 3 2 7 7 C 1.37876 * 119.99898 * 296.27722 * 5 3 2 8 8 N 1.31512 * 120.00203 * 353.34304 * 7 5 3 9 9 Si 1.86804 * 120.00052 * 173.34456 * 7 5 3 10 10 H 1.48505 * 109.46891 * 269.99885 * 9 7 5 11 11 H 1.48500 * 109.47002 * 29.99890 * 9 7 5 12 12 H 1.48498 * 109.47235 * 150.00324 * 9 7 5 13 13 N 1.46898 * 109.47304 * 294.29442 * 3 2 1 14 14 C 1.46895 * 111.00189 * 154.37772 * 13 3 2 15 15 H 1.09006 * 109.50267 * 36.06502 * 14 13 3 16 16 C 1.53031 * 109.50358 * 275.98518 * 14 13 3 17 17 N 1.46854 * 109.52533 * 180.92028 * 16 14 13 18 18 C 1.46846 * 111.23075 * 61.67614 * 17 16 14 19 19 C 1.53030 * 109.52865 * 298.28431 * 18 17 16 20 20 C 1.53118 * 109.50347 * 156.13840 * 14 13 3 21 21 H 1.08997 * 109.52659 * 297.50284 * 20 14 13 22 22 F 1.39904 * 109.52414 * 57.69361 * 20 14 13 23 23 H 1.09010 * 109.47063 * 305.08189 * 1 2 3 24 24 H 1.09003 * 109.47575 * 65.08184 * 1 2 3 25 25 H 1.08998 * 109.47083 * 185.09022 * 1 2 3 26 26 H 1.08997 * 109.46786 * 240.00157 * 2 1 3 27 27 H 1.09000 * 109.47054 * 120.00003 * 2 1 3 28 28 H 0.97005 * 120.00181 * 355.23552 * 8 7 5 29 29 H 1.00900 * 111.00197 * 278.33516 * 13 3 2 30 30 H 1.09001 * 109.46571 * 300.89080 * 16 14 13 31 31 H 1.09001 * 109.46629 * 60.86248 * 16 14 13 32 32 H 1.00894 * 110.99509 * 185.80188 * 17 16 14 33 33 H 1.09000 * 109.46103 * 178.26037 * 18 17 16 34 34 H 1.09006 * 109.44824 * 58.29192 * 18 17 16 35 35 H 1.09005 * 109.50159 * 299.23754 * 19 18 17 36 36 H 1.09000 * 109.50750 * 179.11910 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5956 1.9850 0.8345 5 6 3.5403 1.4449 0.1412 6 1 4.1572 1.8318 -0.6564 7 6 4.1255 0.9530 1.2886 8 7 3.3761 0.6037 2.3113 9 14 5.9830 0.7829 1.3906 10 1 6.3841 -0.5626 0.9067 11 1 6.6225 1.8236 0.5462 12 1 6.4189 0.9522 2.8000 13 7 1.6659 2.0941 -1.2623 14 6 1.5706 3.5504 -1.0950 15 1 2.3376 3.8876 -0.3976 16 6 0.1880 3.9125 -0.5481 17 7 0.0845 5.3701 -0.4014 18 6 0.2301 6.0465 -1.6966 19 6 1.6142 5.7480 -2.2769 20 6 1.7747 4.2350 -2.4493 21 1 2.7751 4.0149 -2.8218 22 9 0.8218 3.7646 -3.3593 23 1 -0.3634 0.5907 0.8410 24 1 -0.3634 0.4330 -0.9320 25 1 -0.3633 -1.0236 0.0912 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.4184 0.7562 2.2853 29 1 2.3141 1.8563 -1.9980 30 1 -0.5790 3.5624 -1.2389 31 1 0.0458 3.4382 0.4230 32 1 -0.7825 5.6277 0.0458 33 1 0.1180 7.1220 -1.5593 34 1 -0.5367 5.6861 -2.3825 35 1 2.3815 6.1202 -1.5979 36 1 1.7162 6.2375 -3.2455 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246480730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = -85.798003 kcal Electronic energy + Delta-G solvation = -17279.282939 eV Core-core repulsion = 14517.795557 eV Total energy + Delta-G solvation = -2761.487382 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.63296 -39.50052 -37.62887 -34.55546 -33.15045 -32.33277 -29.91946 -27.26043 -25.07739 -24.80127 -23.22510 -21.60792 -20.56576 -19.13999 -18.04852 -17.09983 -16.58923 -16.23018 -15.94430 -15.72013 -15.60705 -14.97575 -14.82301 -14.33922 -14.03717 -13.53390 -13.32982 -13.13476 -13.09280 -13.03454 -12.57411 -12.48994 -12.36018 -11.99335 -11.82518 -11.67253 -11.35031 -11.07314 -10.89221 -10.46591 -9.48108 -9.18991 -8.51210 -6.34127 1.51113 1.58084 1.75051 2.55371 3.02040 3.18368 3.41496 3.52454 3.72554 3.81370 3.99320 4.23405 4.31647 4.41479 4.50938 4.52878 4.62295 4.69103 4.72095 4.84678 4.89830 4.95394 5.05533 5.19515 5.22806 5.36046 5.43557 5.64384 5.85645 5.94125 6.04357 6.42086 6.46906 6.56422 6.72376 7.46788 8.76720 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.008484 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.525687 B = 3299.677962 C = 3694.699593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.212 3.788 4 H -0.002 1.002 5 C -0.634 4.634 6 H 0.043 0.957 7 C -0.021 4.021 8 N -0.929 5.929 9 Si 1.108 2.892 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.073 3.927 15 H 0.039 0.961 16 C 0.084 3.916 17 N -0.696 5.696 18 C 0.057 3.943 19 C -0.137 4.137 20 C 0.090 3.910 21 H 0.084 0.916 22 F -0.216 7.216 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.356 0.644 33 H 0.104 0.896 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 9.238 -8.361 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.016 0.984 5 C -0.673 4.673 6 H 0.061 0.939 7 C -0.221 4.221 8 N -0.566 5.566 9 Si 0.931 3.069 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.212 1.212 13 N -0.298 5.298 14 C -0.038 4.038 15 H 0.057 0.943 16 C -0.047 4.047 17 N -0.329 5.329 18 C -0.071 4.071 19 C -0.176 4.176 20 C 0.053 3.947 21 H 0.102 0.898 22 F -0.197 7.197 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.122 0.878 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.763 8.671 -7.162 11.859 hybrid contribution -1.113 0.204 -0.998 1.509 sum -4.877 8.875 -8.160 13.005 Atomic orbital electron populations 1.21563 0.95609 1.00142 1.00970 1.21421 0.95244 0.98285 0.99403 1.19085 0.92394 0.91134 0.87128 0.98372 1.22950 0.93800 1.45924 1.04628 0.93888 1.26987 1.10184 0.92899 0.92042 1.70858 1.07648 1.45804 1.32290 0.83037 0.70415 0.77352 0.76048 1.20146 1.19979 1.21211 1.60676 1.54441 1.06376 1.08332 1.21840 0.97335 0.89110 0.95515 0.94296 1.21579 0.95616 0.88101 0.99362 1.60175 1.42579 1.06442 1.23719 1.21958 0.95872 1.00102 0.89208 1.22194 0.99322 0.92680 1.03371 1.21847 0.90576 0.95601 0.86658 0.89800 1.92762 1.67553 1.90442 1.68961 0.94714 0.92253 0.93099 0.94161 0.94418 0.92791 0.85133 0.94850 0.92821 0.82507 0.87762 0.94931 0.89387 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.75 71.98 0.70 -4.27 16 2 C -0.10 -4.96 5.29 30.59 0.16 -4.79 16 3 C 0.21 10.47 1.41 44.17 0.06 10.53 16 4 H 0.00 -0.09 6.47 -2.39 -0.02 -0.10 16 5 C -0.63 -34.58 8.25 25.60 0.21 -34.37 16 6 H 0.04 2.33 7.71 -2.91 -0.02 2.31 16 7 C -0.02 -1.18 5.20 84.65 0.44 -0.74 16 8 N -0.93 -55.52 12.77 21.45 0.27 -55.25 16 9 Si 1.11 49.89 29.91 68.60 2.05 51.94 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.67 -28.17 5.52 -473.06 -2.61 -30.78 16 14 C 0.07 2.77 2.28 44.97 0.10 2.87 16 15 H 0.04 1.72 7.67 -2.38 -0.02 1.71 16 16 C 0.08 2.89 5.91 86.32 0.51 3.40 16 17 N -0.70 -19.26 6.84 -514.01 -3.52 -22.78 16 18 C 0.06 1.31 6.44 86.32 0.56 1.87 16 19 C -0.14 -3.27 5.88 30.65 0.18 -3.09 16 20 C 0.09 2.76 3.47 30.67 0.11 2.87 16 21 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 22 F -0.22 -7.16 16.13 44.97 0.73 -6.43 16 23 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 2.26 7.92 -2.39 -0.02 2.24 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.98 6.14 -2.39 -0.01 1.97 16 28 H 0.26 15.82 6.16 -92.70 -0.57 15.25 16 29 H 0.33 14.00 8.03 -89.69 -0.72 13.28 16 30 H 0.03 1.17 7.88 -2.39 -0.02 1.15 16 31 H 0.05 2.08 7.38 -2.39 -0.02 2.06 16 32 H 0.36 8.15 8.90 -89.70 -0.80 7.35 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 0.77 7.88 -2.38 -0.02 0.75 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.70 285.50 -0.30 -62.00 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.25 Total: 27.03 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 3.03 Total: -25.72 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.86 Total: -108.81 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.73 Total: -6.43 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -61.70 -0.30 -62.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246480730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.801 kcal (2) G-P(sol) polarization free energy of solvation -61.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds