Wall clock time and date at job start Sun Mar 29 2020 21:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47107 * 2 1 4 4 H 1.08993 * 109.47715 * 54.65523 * 3 2 1 5 5 C 1.50697 * 109.46896 * 174.65653 * 3 2 1 6 6 H 1.08001 * 120.00091 * 119.99970 * 5 3 2 7 7 C 1.37878 * 119.99950 * 299.99475 * 5 3 2 8 8 N 1.31510 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47173 * 59.99898 * 9 7 5 11 11 H 1.48500 * 109.47281 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47431 * 300.00155 * 9 7 5 13 13 N 1.46899 * 109.46796 * 294.65260 * 3 2 1 14 14 C 1.46905 * 110.99969 * 154.34775 * 13 3 2 15 15 H 1.09001 * 109.50244 * 32.04445 * 14 13 3 16 16 C 1.53034 * 109.50278 * 271.96886 * 14 13 3 17 17 N 1.46849 * 109.52295 * 180.92335 * 16 14 13 18 18 C 1.46849 * 111.23446 * 61.67777 * 17 16 14 19 19 C 1.53039 * 109.51968 * 298.27686 * 18 17 16 20 20 C 1.53120 * 109.50175 * 152.12271 * 14 13 3 21 21 H 1.08997 * 109.52496 * 57.69063 * 20 14 13 22 22 F 1.39902 * 109.52328 * 297.56236 * 20 14 13 23 23 H 1.08996 * 109.47276 * 300.65950 * 1 2 3 24 24 H 1.09000 * 109.46923 * 60.66009 * 1 2 3 25 25 H 1.08997 * 109.47164 * 180.66352 * 1 2 3 26 26 H 1.08997 * 109.47206 * 239.99532 * 2 1 3 27 27 H 1.09003 * 109.46780 * 119.99724 * 2 1 3 28 28 H 0.96999 * 120.00288 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00163 * 30.39704 * 13 3 2 30 30 H 1.09003 * 109.45767 * 300.89313 * 16 14 13 31 31 H 1.08993 * 109.46308 * 60.86006 * 16 14 13 32 32 H 1.00905 * 110.96159 * 297.57787 * 17 16 14 33 33 H 1.08999 * 109.46005 * 178.26343 * 18 17 16 34 34 H 1.08993 * 109.45248 * 58.29016 * 18 17 16 35 35 H 1.08996 * 109.50592 * 299.23942 * 19 18 17 36 36 H 1.09007 * 109.53141 * 179.13548 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9833 0.8382 5 6 3.5412 1.4445 0.1323 6 1 4.1509 1.8875 -0.6413 7 6 4.1362 0.8809 1.2410 8 7 3.3939 0.3411 2.1828 9 14 5.9970 0.8840 1.4054 10 1 6.4916 2.2842 1.4056 11 1 6.3827 0.2232 2.6781 12 1 6.5961 0.1477 0.2633 13 7 1.6585 2.0967 -1.2588 14 6 1.5636 3.5526 -1.0877 15 1 2.2870 3.8792 -0.3406 16 6 0.1517 3.9221 -0.6275 17 7 0.0499 5.3793 -0.4777 18 6 0.2827 6.0630 -1.7563 19 6 1.6990 5.7574 -2.2491 20 6 1.8588 4.2443 -2.4216 21 1 1.1604 3.8882 -3.1789 22 9 3.1682 3.9535 -2.8193 23 1 -0.3633 0.5240 0.8840 24 1 -0.3633 0.5036 -0.8959 25 1 -0.3633 -1.0276 0.0119 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8125 -0.0558 2.9626 29 1 0.7944 1.7175 -1.6159 30 1 -0.5722 3.5823 -1.3683 31 1 -0.0556 3.4426 0.3291 32 1 0.6838 5.7144 0.2323 33 1 0.1702 7.1384 -1.6188 34 1 -0.4413 5.7132 -2.4921 35 1 2.4240 6.1191 -1.5200 36 1 1.8668 6.2523 -3.2057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246495066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:51 Heat of formation + Delta-G solvation = -61.269911 kcal Electronic energy + Delta-G solvation = -17226.276854 eV Core-core repulsion = 14465.853090 eV Total energy + Delta-G solvation = -2760.423764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.95149 -38.57577 -35.86902 -32.55594 -31.27819 -30.86455 -28.18160 -25.99722 -23.19379 -23.02635 -21.89370 -20.40385 -19.48304 -16.32977 -16.18619 -15.75829 -15.13499 -14.89289 -14.53542 -14.32604 -13.70310 -13.40437 -13.11685 -12.72481 -12.38986 -12.10520 -11.96062 -11.86442 -11.38931 -11.18768 -11.03633 -10.85116 -10.64206 -10.29928 -10.22535 -9.94837 -9.69801 -9.46329 -9.24835 -8.57217 -8.32720 -7.16120 -5.95885 -3.99560 3.35938 3.39376 3.44360 4.31939 4.46156 4.60664 4.87675 5.00036 5.19605 5.24888 5.32229 5.40381 5.51088 5.62994 5.76088 5.84042 6.05110 6.13447 6.14703 6.17885 6.26302 6.39694 6.55097 6.81764 7.00194 7.05146 7.14292 7.40632 7.45169 7.76371 7.93441 8.23169 8.37912 8.72007 9.09603 9.65511 11.09315 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.009109 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.736961 B = 3073.007677 C = 3640.289472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.674 5.674 14 C 0.036 3.964 15 H 0.091 0.909 16 C 0.033 3.967 17 N -0.686 5.686 18 C 0.062 3.938 19 C -0.186 4.186 20 C 0.107 3.893 21 H 0.071 0.929 22 F -0.204 7.204 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.100 0.900 28 H 0.260 0.740 29 H 0.318 0.682 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.343 0.657 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 7.955 -5.953 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.305 5.305 14 C -0.077 4.077 15 H 0.109 0.891 16 C -0.099 4.099 17 N -0.314 5.314 18 C -0.068 4.068 19 C -0.226 4.226 20 C 0.070 3.930 21 H 0.089 0.911 22 F -0.184 7.184 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.706 7.857 -6.073 11.982 hybrid contribution 1.286 -0.148 0.501 1.388 sum -5.421 7.708 -5.571 10.947 Atomic orbital electron populations 1.21885 0.99558 0.99684 0.99595 1.21782 0.91230 1.00335 1.03186 1.19164 0.95493 0.89930 0.83926 0.97932 1.21213 0.91251 1.36376 1.04341 0.91961 1.24945 0.98093 0.95642 0.95830 1.69855 1.34772 1.39474 1.09654 0.86609 0.85853 0.78153 0.77067 1.20466 1.21485 1.20291 1.60676 1.35919 1.00461 1.33456 1.22782 0.97189 0.91839 0.95930 0.89102 1.22827 0.96540 0.88032 1.02471 1.60626 1.57763 1.05052 1.07997 1.21960 0.93975 0.99162 0.91750 1.22971 1.00093 0.96389 1.03158 1.21516 0.80400 0.93667 0.97402 0.91084 1.92818 1.38897 1.94671 1.92047 0.93827 0.94665 0.94357 0.94032 0.88151 0.93056 0.86356 0.91214 0.89999 0.83894 0.90392 0.90866 0.90812 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.74 37.16 0.36 -2.46 16 2 C -0.13 -2.95 5.36 -26.73 -0.14 -3.09 16 3 C 0.22 5.40 1.84 -68.87 -0.13 5.28 16 4 H 0.00 0.08 7.35 -51.93 -0.38 -0.30 16 5 C -0.49 -13.71 8.55 -34.44 -0.29 -14.00 16 6 H 0.06 1.82 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.83 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.67 -14.01 6.02 -100.87 -0.61 -14.62 16 14 C 0.04 0.65 2.15 -67.63 -0.15 0.50 16 15 H 0.09 1.92 7.64 -51.93 -0.40 1.52 16 16 C 0.03 0.49 5.80 -3.83 -0.02 0.47 16 17 N -0.69 -9.03 6.87 -113.82 -0.78 -9.81 16 18 C 0.06 0.69 6.56 -3.83 -0.03 0.67 16 19 C -0.19 -2.37 5.82 -26.65 -0.16 -2.52 16 20 C 0.11 1.74 3.57 -26.61 -0.09 1.65 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 22 F -0.20 -4.10 17.05 2.25 0.04 -4.07 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.59 6.47 -51.93 -0.34 0.25 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.32 5.97 6.18 -39.29 -0.24 5.73 16 30 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.08 1.36 7.67 -51.93 -0.40 0.97 16 32 H 0.34 4.43 8.86 -39.29 -0.35 4.08 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -28.84 286.23 -7.93 -36.77 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.76 Total: 7.42 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.74 Total: -12.06 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.76 Total: -49.25 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.84 -7.93 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246495066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.496 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds