Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47107 * 2 1 4 4 H 1.08993 * 109.47715 * 54.65523 * 3 2 1 5 5 C 1.50697 * 109.46896 * 174.65653 * 3 2 1 6 6 H 1.08001 * 120.00091 * 119.99970 * 5 3 2 7 7 C 1.37878 * 119.99950 * 299.99475 * 5 3 2 8 8 N 1.31510 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47173 * 59.99898 * 9 7 5 11 11 H 1.48500 * 109.47281 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47431 * 300.00155 * 9 7 5 13 13 N 1.46899 * 109.46796 * 294.65260 * 3 2 1 14 14 C 1.46905 * 110.99969 * 154.34775 * 13 3 2 15 15 H 1.09001 * 109.50244 * 32.04445 * 14 13 3 16 16 C 1.53034 * 109.50278 * 271.96886 * 14 13 3 17 17 N 1.46849 * 109.52295 * 180.92335 * 16 14 13 18 18 C 1.46849 * 111.23446 * 61.67777 * 17 16 14 19 19 C 1.53039 * 109.51968 * 298.27686 * 18 17 16 20 20 C 1.53120 * 109.50175 * 152.12271 * 14 13 3 21 21 H 1.08997 * 109.52496 * 57.69063 * 20 14 13 22 22 F 1.39902 * 109.52328 * 297.56236 * 20 14 13 23 23 H 1.08996 * 109.47276 * 300.65950 * 1 2 3 24 24 H 1.09000 * 109.46923 * 60.66009 * 1 2 3 25 25 H 1.08997 * 109.47164 * 180.66352 * 1 2 3 26 26 H 1.08997 * 109.47206 * 239.99532 * 2 1 3 27 27 H 1.09003 * 109.46780 * 119.99724 * 2 1 3 28 28 H 0.96999 * 120.00288 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00163 * 30.39704 * 13 3 2 30 30 H 1.09003 * 109.45767 * 300.89313 * 16 14 13 31 31 H 1.08993 * 109.46308 * 60.86006 * 16 14 13 32 32 H 1.00905 * 110.96159 * 297.57787 * 17 16 14 33 33 H 1.08999 * 109.46005 * 178.26343 * 18 17 16 34 34 H 1.08993 * 109.45248 * 58.29016 * 18 17 16 35 35 H 1.08996 * 109.50592 * 299.23942 * 19 18 17 36 36 H 1.09007 * 109.53141 * 179.13548 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6007 1.9833 0.8382 5 6 3.5412 1.4445 0.1323 6 1 4.1509 1.8875 -0.6413 7 6 4.1362 0.8809 1.2410 8 7 3.3939 0.3411 2.1828 9 14 5.9970 0.8840 1.4054 10 1 6.4916 2.2842 1.4056 11 1 6.3827 0.2232 2.6781 12 1 6.5961 0.1477 0.2633 13 7 1.6585 2.0967 -1.2588 14 6 1.5636 3.5526 -1.0877 15 1 2.2870 3.8792 -0.3406 16 6 0.1517 3.9221 -0.6275 17 7 0.0499 5.3793 -0.4777 18 6 0.2827 6.0630 -1.7563 19 6 1.6990 5.7574 -2.2491 20 6 1.8588 4.2443 -2.4216 21 1 1.1604 3.8882 -3.1789 22 9 3.1682 3.9535 -2.8193 23 1 -0.3633 0.5240 0.8840 24 1 -0.3633 0.5036 -0.8959 25 1 -0.3633 -1.0276 0.0119 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8125 -0.0558 2.9626 29 1 0.7944 1.7175 -1.6159 30 1 -0.5722 3.5823 -1.3683 31 1 -0.0556 3.4426 0.3291 32 1 0.6838 5.7144 0.2323 33 1 0.1702 7.1384 -1.6188 34 1 -0.4413 5.7132 -2.4921 35 1 2.4240 6.1191 -1.5200 36 1 1.8668 6.2523 -3.2057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246495066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = -82.168290 kcal Electronic energy + Delta-G solvation = -17227.183076 eV Core-core repulsion = 14465.853090 eV Total energy + Delta-G solvation = -2761.329986 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.42091 -39.88291 -37.51977 -34.43892 -32.99114 -31.99212 -29.74887 -27.85350 -24.79953 -24.36941 -23.18447 -21.84813 -21.20306 -18.34402 -17.52456 -17.17494 -16.73979 -16.47065 -15.93878 -15.86219 -15.19971 -14.91238 -14.57539 -14.37978 -13.79806 -13.51250 -13.40562 -13.31685 -13.07362 -12.79691 -12.59721 -12.50476 -12.27119 -12.02181 -11.83223 -11.54061 -11.49264 -11.14461 -11.02407 -10.45746 -9.88212 -8.77023 -8.08725 -6.20412 1.37556 1.38608 1.46975 2.41061 3.13714 3.20673 3.35403 3.65992 3.81445 3.95397 4.02695 4.18107 4.27263 4.45798 4.51577 4.57633 4.68293 4.73692 4.84008 4.85574 4.98917 5.00537 5.11630 5.22649 5.26390 5.36869 5.56875 5.72070 5.88270 5.95622 6.33317 6.34245 6.48022 6.92556 6.97331 7.48295 8.93173 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.009109 C = 0.007690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.736961 B = 3073.007677 C = 3640.289472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.024 1.024 5 C -0.513 4.513 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.038 3.962 15 H 0.050 0.950 16 C 0.047 3.953 17 N -0.684 5.684 18 C 0.065 3.935 19 C -0.176 4.176 20 C 0.100 3.900 21 H 0.091 0.909 22 F -0.230 7.230 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.343 0.657 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 8.947 -7.019 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.124 3.876 4 H -0.007 1.007 5 C -0.552 4.552 6 H 0.058 0.942 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.075 4.075 15 H 0.069 0.931 16 C -0.084 4.084 17 N -0.312 5.312 18 C -0.065 4.065 19 C -0.216 4.216 20 C 0.063 3.937 21 H 0.109 0.891 22 F -0.211 7.211 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.868 8.865 -7.148 13.841 hybrid contribution 1.641 -0.422 0.811 1.879 sum -6.227 8.442 -6.337 12.256 Atomic orbital electron populations 1.21740 0.95865 1.01290 1.00598 1.21605 0.94541 0.98895 1.01090 1.18861 0.93536 0.90644 0.84552 1.00686 1.21431 0.93183 1.36510 1.04034 0.94167 1.25599 1.01952 0.95391 0.95612 1.69967 1.36092 1.39699 1.09847 0.85749 0.81309 0.78095 0.77264 1.20329 1.20445 1.20180 1.60534 1.37000 1.02181 1.31620 1.22783 0.98210 0.90191 0.96340 0.93126 1.22591 0.94612 0.89458 1.01762 1.60664 1.57645 1.03685 1.09230 1.22101 0.93034 1.00512 0.90804 1.22922 1.00997 0.93492 1.04184 1.21819 0.79324 0.96085 0.96471 0.89078 1.92767 1.41005 1.95076 1.92224 0.94190 0.92255 0.92419 0.94851 0.91400 0.92995 0.84917 0.89302 0.91962 0.83918 0.87758 0.89376 0.91897 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.74 71.98 0.70 -4.29 16 2 C -0.12 -5.77 5.36 30.59 0.16 -5.61 16 3 C 0.23 11.62 1.84 44.17 0.08 11.70 16 4 H -0.02 -1.33 7.35 -2.39 -0.02 -1.35 16 5 C -0.51 -29.47 8.55 25.60 0.22 -29.25 16 6 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -53.08 11.29 21.45 0.24 -52.84 16 9 Si 0.95 45.64 29.54 68.60 2.03 47.66 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.68 -28.46 6.02 -473.05 -2.85 -31.31 16 14 C 0.04 1.37 2.15 44.97 0.10 1.46 16 15 H 0.05 2.23 7.64 -2.39 -0.02 2.21 16 16 C 0.05 1.38 5.80 86.32 0.50 1.88 16 17 N -0.68 -16.59 6.87 -514.01 -3.53 -20.12 16 18 C 0.06 1.23 6.56 86.33 0.57 1.80 16 19 C -0.18 -4.06 5.82 30.65 0.18 -3.88 16 20 C 0.10 3.12 3.57 30.68 0.11 3.23 16 21 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 22 F -0.23 -9.26 17.05 44.97 0.77 -8.49 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.85 6.47 -2.39 -0.02 1.84 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 3.65 5.94 -2.39 -0.01 3.64 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.33 12.06 6.18 -89.70 -0.55 11.50 16 30 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 31 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 32 H 0.34 8.47 8.86 -89.69 -0.79 7.68 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.85 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -63.88 286.23 -0.56 -64.44 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.28 Total: 22.45 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.06 Total: -21.80 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -6.13 Total: -104.27 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.77 Total: -8.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -63.88 -0.56 -64.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246495066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.733 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds