Wall clock time and date at job start Sun Mar 29 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 H 1.09004 * 109.47042 * 177.21567 * 3 2 1 5 5 C 1.50699 * 109.46897 * 57.21833 * 3 2 1 6 6 H 1.08000 * 120.00128 * 244.10331 * 5 3 2 7 7 C 1.37872 * 120.00222 * 64.10850 * 5 3 2 8 8 N 1.31515 * 120.00124 * 10.05728 * 7 5 3 9 9 Si 1.86803 * 120.00084 * 190.05670 * 7 5 3 10 10 H 1.48499 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47087 * 300.00015 * 9 7 5 12 12 H 1.48492 * 109.47216 * 60.00181 * 9 7 5 13 13 N 1.46897 * 109.47108 * 297.21771 * 3 2 1 14 14 C 1.46899 * 111.00092 * 273.96783 * 13 3 2 15 15 H 1.08999 * 109.50077 * 36.12677 * 14 13 3 16 16 C 1.53038 * 109.50531 * 276.04870 * 14 13 3 17 17 N 1.46853 * 109.52170 * 180.88118 * 16 14 13 18 18 C 1.46839 * 111.19936 * 61.74276 * 17 16 14 19 19 C 1.53043 * 109.52348 * 298.25560 * 18 17 16 20 20 C 1.53116 * 109.50286 * 156.20338 * 14 13 3 21 21 H 1.09003 * 109.52604 * 57.69305 * 20 14 13 22 22 F 1.39900 * 109.52518 * 297.50303 * 20 14 13 23 23 H 1.08995 * 109.46608 * 304.54794 * 1 2 3 24 24 H 1.08995 * 109.46796 * 64.55029 * 1 2 3 25 25 H 1.08995 * 109.46975 * 184.54713 * 1 2 3 26 26 H 1.09006 * 109.46746 * 240.00436 * 2 1 3 27 27 H 1.08996 * 109.47235 * 120.00264 * 2 1 3 28 28 H 0.97002 * 119.99637 * 357.33824 * 8 7 5 29 29 H 1.00894 * 111.00448 * 37.92678 * 13 3 2 30 30 H 1.08997 * 109.46100 * 300.89564 * 16 14 13 31 31 H 1.08994 * 109.46019 * 60.87372 * 16 14 13 32 32 H 1.00900 * 110.99808 * 185.84114 * 17 16 14 33 33 H 1.08991 * 109.46556 * 58.27371 * 18 17 16 34 34 H 1.09004 * 109.46139 * 178.25977 * 18 17 16 35 35 H 1.08993 * 109.50501 * 179.12526 * 19 18 17 36 36 H 1.09004 * 109.50270 * 299.20063 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1290 1.4428 0.0499 5 6 1.4822 2.1724 1.1945 6 1 0.8132 3.0084 1.0526 7 6 1.8258 1.7733 2.4687 8 7 2.7860 0.8921 2.6452 9 14 0.9276 2.4841 3.9443 10 1 1.4817 1.8972 5.1909 11 1 1.1063 3.9580 3.9697 12 1 -0.5187 2.1624 3.8455 13 7 1.6061 2.1153 -1.2316 14 6 2.5541 1.8713 -2.3269 15 1 2.9453 0.8568 -2.2504 16 6 3.7083 2.8721 -2.2361 17 7 4.6455 2.6422 -3.3431 18 6 3.9935 2.8492 -4.6424 19 6 2.8478 1.8477 -4.8051 20 6 1.8390 2.0435 -3.6698 21 1 1.4136 3.0453 -3.7302 22 9 0.8183 1.0933 -3.7813 23 1 -0.3632 0.5828 0.8464 24 1 -0.3633 0.4416 -0.9279 25 1 -0.3633 -1.0244 0.0815 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.2262 0.4942 1.8779 29 1 0.6735 1.8298 -1.4903 30 1 3.3150 3.8867 -2.2980 31 1 4.2283 2.7415 -1.2871 32 1 5.4633 3.2261 -3.2517 33 1 3.5988 3.8639 -4.6931 34 1 4.7205 2.7018 -5.4411 35 1 2.3542 2.0118 -5.7629 36 1 3.2437 0.8327 -4.7690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246495067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:53 Heat of formation + Delta-G solvation = -83.616096 kcal Electronic energy + Delta-G solvation = -17243.811174 eV Core-core repulsion = 14482.418407 eV Total energy + Delta-G solvation = -2761.392767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.76402 -39.80548 -37.90588 -34.61865 -32.78393 -32.29873 -29.67970 -27.34518 -25.60087 -24.56099 -23.49424 -21.47070 -20.96077 -18.83228 -18.01957 -17.29434 -16.57753 -16.11640 -16.08977 -15.61710 -15.47430 -15.25759 -15.01319 -14.63220 -14.01945 -13.79481 -13.32915 -13.28129 -13.16393 -12.72457 -12.61628 -12.50236 -12.18972 -11.95158 -11.90845 -11.76065 -11.58911 -11.23370 -10.71512 -10.30635 -9.51594 -9.16919 -8.52028 -6.20195 1.55808 1.62873 1.81867 2.59656 2.99073 3.25142 3.36473 3.47698 3.59995 3.81694 3.86696 4.13572 4.23812 4.29653 4.33795 4.47919 4.53150 4.56955 4.75036 4.78376 4.87524 4.92781 4.99689 5.07867 5.16727 5.18666 5.35555 5.49134 5.84910 6.01686 6.19665 6.41546 6.52473 6.64409 6.76480 7.55466 8.84342 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.007695 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.593529 B = 3637.790056 C = 4043.657589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.142 4.142 3 C 0.213 3.787 4 H -0.005 1.005 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.028 4.028 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.066 3.934 15 H 0.027 0.973 16 C 0.084 3.916 17 N -0.699 5.699 18 C 0.062 3.938 19 C -0.135 4.135 20 C 0.088 3.912 21 H 0.096 0.904 22 F -0.225 7.225 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.256 0.744 29 H 0.336 0.664 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.359 0.641 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 3.752 -14.336 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.182 4.182 3 C 0.104 3.896 4 H 0.013 0.987 5 C -0.615 4.615 6 H 0.065 0.935 7 C -0.226 4.226 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.214 1.214 11 H -0.201 1.201 12 H -0.197 1.197 13 N -0.307 5.307 14 C -0.045 4.045 15 H 0.045 0.955 16 C -0.046 4.046 17 N -0.333 5.333 18 C -0.067 4.067 19 C -0.174 4.174 20 C 0.051 3.949 21 H 0.114 0.886 22 F -0.206 7.206 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.178 0.822 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.144 3.656 -12.533 13.056 hybrid contribution -0.022 -0.353 -1.527 1.567 sum 0.121 3.304 -14.060 14.443 Atomic orbital electron populations 1.21488 0.94927 1.00348 1.01296 1.22061 0.97689 1.00080 0.98407 1.19094 0.93185 0.89097 0.88265 0.98738 1.22024 1.30756 1.16757 0.91978 0.93522 1.27000 0.95853 0.96273 1.03464 1.70927 1.22379 1.30257 1.34011 0.83024 0.75402 0.75768 0.72610 1.21394 1.20059 1.19661 1.60668 1.04747 1.62297 1.03013 1.22014 0.93968 0.97678 0.90824 0.95483 1.21572 0.92336 0.96666 0.94011 1.60168 1.09445 1.61739 1.01921 1.21955 0.96260 0.97013 0.91506 1.22182 0.95690 1.01667 0.97812 1.21972 0.85997 0.91129 0.95798 0.88585 1.92766 1.62643 1.68148 1.97047 0.92909 0.93156 0.93138 0.95309 0.94180 0.93357 0.84409 0.94046 0.92984 0.82158 0.93590 0.87432 0.87685 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 9.39 71.98 0.68 -4.58 16 2 C -0.14 -6.84 5.45 30.60 0.17 -6.67 16 3 C 0.21 10.77 1.76 44.17 0.08 10.85 16 4 H -0.01 -0.30 6.43 -2.38 -0.02 -0.31 16 5 C -0.58 -32.01 7.30 25.60 0.19 -31.83 16 6 H 0.05 2.63 7.83 -2.91 -0.02 2.60 16 7 C -0.03 -1.57 5.21 84.65 0.44 -1.13 16 8 N -0.94 -56.84 13.06 21.45 0.28 -56.56 16 9 Si 1.11 50.49 29.92 68.60 2.05 52.54 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.68 -29.05 6.04 -473.06 -2.86 -31.90 16 14 C 0.07 2.43 2.24 44.97 0.10 2.53 16 15 H 0.03 1.13 7.18 -2.39 -0.02 1.11 16 16 C 0.08 2.81 6.02 86.32 0.52 3.33 16 17 N -0.70 -17.70 6.85 -514.01 -3.52 -21.21 16 18 C 0.06 1.18 6.55 86.33 0.57 1.75 16 19 C -0.14 -2.98 5.83 30.65 0.18 -2.80 16 20 C 0.09 2.56 3.43 30.67 0.11 2.66 16 21 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 22 F -0.23 -7.45 16.48 44.97 0.74 -6.71 16 23 H 0.05 2.44 6.97 -2.39 -0.02 2.42 16 24 H 0.05 1.97 6.53 -2.39 -0.02 1.95 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.03 1.30 7.46 -2.38 -0.02 1.28 16 27 H 0.04 2.12 6.35 -2.39 -0.02 2.11 16 28 H 0.26 15.78 5.96 -92.71 -0.55 15.23 16 29 H 0.34 14.12 5.64 -89.70 -0.51 13.61 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 2.05 7.38 -2.39 -0.02 2.03 16 32 H 0.36 7.45 8.90 -89.69 -0.80 6.65 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.69 280.49 -0.29 -63.99 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.01 Total: 25.75 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.02 Total: -25.89 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -6.10 Total: -109.68 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.74 Total: -6.71 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.54 kcal Total: -63.69 -0.29 -63.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246495067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.629 kcal (2) G-P(sol) polarization free energy of solvation -63.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds