Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 H 1.09007 * 109.46960 * 304.42625 * 3 2 1 5 5 C 1.50690 * 109.47381 * 184.42696 * 3 2 1 6 6 H 1.08006 * 120.00092 * 244.09997 * 5 3 2 7 7 C 1.37880 * 120.00024 * 64.09374 * 5 3 2 8 8 N 1.31509 * 120.00065 * 8.59685 * 7 5 3 9 9 Si 1.86809 * 119.99970 * 188.59542 * 7 5 3 10 10 H 1.48502 * 109.47107 * 90.00049 * 9 7 5 11 11 H 1.48505 * 109.47030 * 330.00068 * 9 7 5 12 12 H 1.48493 * 109.47025 * 210.00045 * 9 7 5 13 13 N 1.46899 * 109.47083 * 64.42065 * 3 2 1 14 14 C 1.46844 * 111.00226 * 189.57639 * 13 3 2 15 15 C 1.53032 * 109.52508 * 174.16451 * 14 13 3 16 16 H 1.08999 * 109.50643 * 299.23964 * 15 14 13 17 17 N 1.46905 * 109.50337 * 179.16661 * 15 14 13 18 18 C 1.53114 * 109.27993 * 59.18299 * 15 14 13 19 19 C 1.53119 * 109.16050 * 302.34659 * 18 15 14 20 20 H 1.08999 * 109.50323 * 297.70980 * 19 18 15 21 21 F 1.39898 * 109.50354 * 177.63193 * 19 18 15 22 22 C 1.46851 * 110.99852 * 65.37384 * 13 3 2 23 23 H 1.08995 * 109.46771 * 59.99709 * 1 2 3 24 24 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46668 * 300.00320 * 1 2 3 26 26 H 1.08998 * 109.47002 * 239.99756 * 2 1 3 27 27 H 1.09008 * 109.47003 * 120.00074 * 2 1 3 28 28 H 0.96997 * 119.99870 * 3.01651 * 8 7 5 29 29 H 1.08997 * 109.46599 * 294.18666 * 14 13 3 30 30 H 1.09006 * 109.46184 * 54.14752 * 14 13 3 31 31 H 1.00895 * 110.99882 * 180.02562 * 17 15 14 32 32 H 1.00903 * 110.99978 * 303.94956 * 17 15 14 33 33 H 1.09002 * 109.52142 * 62.25052 * 18 15 14 34 34 H 1.09004 * 109.52524 * 182.43888 * 18 15 14 35 35 H 1.09003 * 109.46305 * 305.85719 * 22 13 3 36 36 H 1.08999 * 109.46366 * 65.81674 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6135 1.9787 -0.8477 5 6 3.5430 1.4438 -0.1097 6 1 4.1433 1.8311 0.7004 7 6 4.1519 0.9506 -1.2441 8 7 3.4273 0.6366 -2.2957 9 14 6.0063 0.7284 -1.2874 10 1 6.3528 -0.6344 -0.8098 11 1 6.6466 1.7390 -0.4077 12 1 6.4934 0.9038 -2.6792 13 7 1.6396 2.1034 1.2492 14 6 1.9105 3.5455 1.1919 15 6 1.3502 4.2214 2.4454 16 1 0.2720 4.0679 2.4906 17 7 1.6390 5.6610 2.3970 18 6 2.0061 3.6090 3.6860 19 6 1.7502 2.0994 3.6964 20 1 0.6783 1.9125 3.7612 21 9 2.3921 1.5244 4.7984 22 6 2.2989 1.4850 2.4066 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.4700 0.7928 -2.2892 29 1 2.9865 3.7112 1.1401 30 1 1.4350 3.9695 0.3074 31 1 1.2790 6.1296 3.2148 32 1 2.6285 5.8280 2.2912 33 1 3.0796 3.7963 3.6604 34 1 1.5785 4.0571 4.5829 35 1 2.1055 0.4123 2.4044 36 1 3.3731 1.6603 2.3492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246570991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -63.042441 kcal Electronic energy + Delta-G solvation = -17405.369020 eV Core-core repulsion = 14644.868393 eV Total energy + Delta-G solvation = -2760.500627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.34939 -38.71687 -35.68449 -32.89781 -31.43456 -30.56508 -27.80916 -26.28035 -23.87084 -22.54230 -22.01412 -19.94686 -19.37225 -16.97214 -15.97038 -15.95616 -15.63458 -14.87896 -14.12824 -13.88347 -13.83097 -13.61619 -13.42009 -12.82289 -12.66063 -12.42716 -12.12990 -11.59927 -11.30758 -10.88780 -10.79991 -10.71675 -10.55041 -10.34743 -10.20817 -10.08081 -9.75258 -9.62943 -9.06050 -8.65264 -8.37553 -7.22298 -6.40186 -4.16207 3.39267 3.40261 3.56312 4.34759 4.47100 4.75411 4.84246 4.94925 5.18247 5.28716 5.33799 5.39058 5.69376 5.85861 5.94578 6.04200 6.18341 6.19872 6.27111 6.37787 6.45050 6.58277 6.64077 6.84230 6.87244 7.03567 7.18083 7.30966 7.38259 7.48429 7.77885 8.03160 8.16352 8.45080 8.75948 9.55826 10.94151 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.009343 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.459265 B = 2996.274389 C = 3187.599310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.205 3.795 4 H 0.034 0.966 5 C -0.628 4.628 6 H 0.051 0.949 7 C 0.030 3.970 8 N -0.904 5.904 9 Si 1.062 2.938 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.285 1.285 13 N -0.524 5.524 14 C 0.070 3.930 15 C 0.096 3.904 16 H 0.086 0.914 17 N -0.840 5.840 18 C -0.176 4.176 19 C 0.093 3.907 20 H 0.084 0.916 21 F -0.220 7.220 22 C 0.038 3.962 23 H 0.041 0.959 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.273 0.727 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.337 0.663 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 4.644 9.442 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.098 3.902 4 H 0.052 0.948 5 C -0.667 4.667 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.540 5.540 9 Si 0.891 3.109 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.210 1.210 13 N -0.248 5.248 14 C -0.059 4.059 15 C -0.016 4.016 16 H 0.104 0.896 17 N -0.368 5.368 18 C -0.216 4.216 19 C 0.056 3.944 20 H 0.102 0.898 21 F -0.201 7.201 22 C -0.091 4.091 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.439 4.050 7.880 9.504 hybrid contribution 0.355 0.396 1.882 1.956 sum -3.084 4.446 9.762 11.162 Atomic orbital electron populations 1.21724 0.97998 0.99012 1.01100 1.21676 0.93151 0.99249 1.01288 1.19363 0.94169 0.90541 0.86105 0.94837 1.22476 0.92210 1.46726 1.05301 0.93089 1.25642 1.06444 0.93435 0.92072 1.70762 1.08981 1.44588 1.29637 0.83646 0.74949 0.76479 0.75867 1.21394 1.21718 1.21034 1.62193 1.56923 1.01682 1.04030 1.21833 0.98996 0.88915 0.96154 1.21441 1.00279 0.86512 0.93372 0.89569 1.58873 1.21435 1.09980 1.46513 1.23031 1.02297 0.96013 1.00232 1.21585 0.97034 0.92066 0.83725 0.89767 1.92764 1.84580 1.86549 1.56205 1.22444 0.98097 0.99661 0.88918 0.94010 0.95071 0.92784 0.91472 0.93697 0.91546 0.94337 0.90702 0.85060 0.84795 0.91358 0.91706 0.90073 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.80 37.16 0.36 -2.31 16 2 C -0.12 -2.58 5.01 -26.73 -0.13 -2.71 16 3 C 0.20 4.82 1.34 -68.87 -0.09 4.73 16 4 H 0.03 0.87 7.35 -51.92 -0.38 0.49 16 5 C -0.63 -16.50 7.18 -34.44 -0.25 -16.75 16 6 H 0.05 1.37 5.86 -52.48 -0.31 1.06 16 7 C 0.03 0.82 5.17 -17.82 -0.09 0.73 16 8 N -0.90 -26.00 12.84 55.43 0.71 -25.29 16 9 Si 1.06 24.70 29.91 -169.99 -5.08 19.61 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -10.46 4.04 -228.09 -0.92 -11.38 16 14 C 0.07 1.30 4.73 -3.84 -0.02 1.28 16 15 C 0.10 1.41 3.41 -67.63 -0.23 1.18 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 17 N -0.84 -10.61 9.26 -4.60 -0.04 -10.65 16 18 C -0.18 -2.48 5.31 -26.61 -0.14 -2.63 16 19 C 0.09 1.49 4.04 -26.65 -0.11 1.39 16 20 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 21 F -0.22 -3.77 17.09 2.25 0.04 -3.73 16 22 C 0.04 0.73 4.53 -3.83 -0.02 0.71 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.98 7.73 -51.93 -0.40 0.58 16 26 H 0.07 1.67 6.29 -51.93 -0.33 1.34 16 27 H 0.04 1.00 6.23 -51.92 -0.32 0.67 16 28 H 0.27 7.80 6.20 -40.82 -0.25 7.55 16 29 H 0.04 0.79 7.35 -51.93 -0.38 0.41 16 30 H 0.07 1.48 8.02 -51.93 -0.42 1.06 16 31 H 0.34 3.45 9.04 -39.29 -0.36 3.09 16 32 H 0.34 4.14 8.98 -39.29 -0.35 3.79 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.61 6.11 -51.93 -0.32 1.30 16 36 H 0.05 1.10 6.33 -51.93 -0.33 0.77 16 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -27.58 279.32 -7.28 -34.87 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.48 Total: 6.75 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.72 Total: -14.39 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.25 Total: -47.32 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.58 -7.28 -34.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246570991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.177 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds