Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47491 * 2 1 4 4 H 1.09007 * 109.46960 * 304.42625 * 3 2 1 5 5 C 1.50690 * 109.47381 * 184.42696 * 3 2 1 6 6 H 1.08006 * 120.00092 * 244.09997 * 5 3 2 7 7 C 1.37880 * 120.00024 * 64.09374 * 5 3 2 8 8 N 1.31509 * 120.00065 * 8.59685 * 7 5 3 9 9 Si 1.86809 * 119.99970 * 188.59542 * 7 5 3 10 10 H 1.48502 * 109.47107 * 90.00049 * 9 7 5 11 11 H 1.48505 * 109.47030 * 330.00068 * 9 7 5 12 12 H 1.48493 * 109.47025 * 210.00045 * 9 7 5 13 13 N 1.46899 * 109.47083 * 64.42065 * 3 2 1 14 14 C 1.46844 * 111.00226 * 189.57639 * 13 3 2 15 15 C 1.53032 * 109.52508 * 174.16451 * 14 13 3 16 16 H 1.08999 * 109.50643 * 299.23964 * 15 14 13 17 17 N 1.46905 * 109.50337 * 179.16661 * 15 14 13 18 18 C 1.53114 * 109.27993 * 59.18299 * 15 14 13 19 19 C 1.53119 * 109.16050 * 302.34659 * 18 15 14 20 20 H 1.08999 * 109.50323 * 297.70980 * 19 18 15 21 21 F 1.39898 * 109.50354 * 177.63193 * 19 18 15 22 22 C 1.46851 * 110.99852 * 65.37384 * 13 3 2 23 23 H 1.08995 * 109.46771 * 59.99709 * 1 2 3 24 24 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46668 * 300.00320 * 1 2 3 26 26 H 1.08998 * 109.47002 * 239.99756 * 2 1 3 27 27 H 1.09008 * 109.47003 * 120.00074 * 2 1 3 28 28 H 0.96997 * 119.99870 * 3.01651 * 8 7 5 29 29 H 1.08997 * 109.46599 * 294.18666 * 14 13 3 30 30 H 1.09006 * 109.46184 * 54.14752 * 14 13 3 31 31 H 1.00895 * 110.99882 * 180.02562 * 17 15 14 32 32 H 1.00903 * 110.99978 * 303.94956 * 17 15 14 33 33 H 1.09002 * 109.52142 * 62.25052 * 18 15 14 34 34 H 1.09004 * 109.52524 * 182.43888 * 18 15 14 35 35 H 1.09003 * 109.46305 * 305.85719 * 22 13 3 36 36 H 1.08999 * 109.46366 * 65.81674 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6135 1.9787 -0.8477 5 6 3.5430 1.4438 -0.1097 6 1 4.1433 1.8311 0.7004 7 6 4.1519 0.9506 -1.2441 8 7 3.4273 0.6366 -2.2957 9 14 6.0063 0.7284 -1.2874 10 1 6.3528 -0.6344 -0.8098 11 1 6.6466 1.7390 -0.4077 12 1 6.4934 0.9038 -2.6792 13 7 1.6396 2.1034 1.2492 14 6 1.9105 3.5455 1.1919 15 6 1.3502 4.2214 2.4454 16 1 0.2720 4.0679 2.4906 17 7 1.6390 5.6610 2.3970 18 6 2.0061 3.6090 3.6860 19 6 1.7502 2.0994 3.6964 20 1 0.6783 1.9125 3.7612 21 9 2.3921 1.5244 4.7984 22 6 2.2989 1.4850 2.4066 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.4700 0.7928 -2.2892 29 1 2.9865 3.7112 1.1401 30 1 1.4350 3.9695 0.3074 31 1 1.2790 6.1296 3.2148 32 1 2.6285 5.8280 2.2912 33 1 3.0796 3.7963 3.6604 34 1 1.5785 4.0571 4.5829 35 1 2.1055 0.4123 2.4044 36 1 3.3731 1.6603 2.3492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246570991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -82.198465 kcal Electronic energy + Delta-G solvation = -17406.199687 eV Core-core repulsion = 14644.868393 eV Total energy + Delta-G solvation = -2761.331294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.68410 -40.26451 -37.24485 -34.59091 -33.17678 -32.01438 -29.17886 -28.08402 -25.70179 -24.17811 -23.40097 -21.38928 -21.11629 -18.88783 -17.52363 -17.21987 -16.92397 -16.25195 -15.78178 -15.73819 -15.45559 -14.93821 -14.83514 -14.57026 -14.11440 -13.90823 -13.62115 -13.21830 -13.13005 -12.59659 -12.42240 -12.31263 -12.06472 -12.03587 -11.81859 -11.73342 -11.50167 -11.18640 -10.96879 -10.46794 -9.70925 -9.03464 -8.55100 -6.33586 1.48007 1.54012 1.71264 2.52212 2.91655 3.15783 3.46393 3.60907 3.69755 3.86458 3.98684 4.14392 4.31065 4.43098 4.48033 4.51247 4.65603 4.72602 4.76453 4.80246 4.97120 4.99766 5.08784 5.20426 5.23539 5.31073 5.45402 5.60636 5.86520 6.00841 6.14401 6.40826 6.45064 6.58946 6.60112 7.45175 8.76252 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.009343 C = 0.008782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.459265 B = 2996.274389 C = 3187.599310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.004 0.996 5 C -0.629 4.629 6 H 0.041 0.959 7 C -0.017 4.017 8 N -0.928 5.928 9 Si 1.103 2.897 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.513 5.513 14 C 0.072 3.928 15 C 0.112 3.888 16 H 0.096 0.904 17 N -0.841 5.841 18 C -0.167 4.167 19 C 0.100 3.900 20 H 0.106 0.894 21 F -0.224 7.224 22 C 0.040 3.960 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.013 0.987 30 H 0.058 0.942 31 H 0.356 0.644 32 H 0.343 0.657 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 5.291 11.311 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.100 3.900 4 H 0.022 0.978 5 C -0.668 4.668 6 H 0.059 0.941 7 C -0.218 4.218 8 N -0.565 5.565 9 Si 0.927 3.073 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.237 5.237 14 C -0.057 4.057 15 C -0.001 4.001 16 H 0.114 0.886 17 N -0.371 5.371 18 C -0.207 4.207 19 C 0.062 3.938 20 H 0.124 0.876 21 F -0.205 7.205 22 C -0.089 4.089 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.082 4.717 9.781 11.601 hybrid contribution 0.545 0.229 1.309 1.437 sum -3.536 4.946 11.090 12.648 Atomic orbital electron populations 1.21602 0.95039 1.00554 1.01462 1.21518 0.95738 0.97780 0.99668 1.19181 0.92524 0.91346 0.86938 0.97767 1.22736 0.93837 1.45647 1.04592 0.94093 1.26838 1.09794 0.93210 0.91959 1.70861 1.08577 1.46489 1.30535 0.83096 0.70976 0.77211 0.76046 1.20240 1.20452 1.20988 1.62152 1.56360 1.02332 1.02856 1.21844 0.97487 0.88299 0.98093 1.21192 1.00366 0.87327 0.91180 0.88636 1.58798 1.21905 1.08622 1.47776 1.22987 1.02005 0.94531 1.01203 1.21563 0.97739 0.92929 0.81535 0.87573 1.92761 1.84832 1.86787 1.56119 1.22418 0.96523 0.99520 0.90401 0.94356 0.92948 0.91607 0.94468 0.93815 0.92657 0.96898 0.92367 0.82915 0.84453 0.92229 0.88422 0.90994 0.95926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.80 71.98 0.71 -4.08 16 2 C -0.11 -4.92 5.01 30.59 0.15 -4.77 16 3 C 0.21 10.03 1.34 44.16 0.06 10.09 16 4 H 0.00 0.24 7.35 -2.38 -0.02 0.22 16 5 C -0.63 -33.95 7.18 25.60 0.18 -33.76 16 6 H 0.04 2.26 5.86 -2.91 -0.02 2.24 16 7 C -0.02 -0.97 5.17 84.66 0.44 -0.53 16 8 N -0.93 -54.85 12.84 21.45 0.28 -54.58 16 9 Si 1.10 50.28 29.91 68.60 2.05 52.33 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.51 -20.45 4.04 -875.54 -3.53 -23.99 16 14 C 0.07 2.66 4.73 86.32 0.41 3.07 16 15 C 0.11 3.01 3.41 44.96 0.15 3.16 16 16 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 17 N -0.84 -19.10 9.26 -168.47 -1.56 -20.66 16 18 C -0.17 -4.23 5.31 30.67 0.16 -4.06 16 19 C 0.10 2.94 4.04 30.64 0.12 3.07 16 20 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 21 F -0.22 -7.13 17.09 44.97 0.77 -6.36 16 22 C 0.04 1.53 4.53 86.32 0.39 1.92 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.27 7.73 -2.38 -0.02 2.25 16 26 H 0.04 1.90 6.29 -2.39 -0.02 1.88 16 27 H 0.04 1.95 6.23 -2.38 -0.01 1.94 16 28 H 0.26 15.64 6.20 -92.71 -0.57 15.07 16 29 H 0.01 0.54 7.35 -2.39 -0.02 0.52 16 30 H 0.06 2.33 8.02 -2.38 -0.02 2.31 16 31 H 0.36 6.00 9.04 -89.70 -0.81 5.19 16 32 H 0.34 7.69 8.98 -89.69 -0.81 6.89 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.83 6.11 -2.39 -0.01 2.82 16 36 H 0.02 0.98 6.33 -2.39 -0.02 0.97 16 Total: -1.00 -60.37 279.32 0.44 -59.92 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.34 Total: 19.22 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 2.78 Total: -25.89 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -4.82 Total: -99.23 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.77 Total: -6.36 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -60.37 0.44 -59.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246570991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.274 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds