Wall clock time and date at job start Sun Mar 29 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47405 * 2 1 4 4 H 1.09002 * 109.47253 * 181.82859 * 3 2 1 5 5 C 1.50694 * 109.47547 * 61.82052 * 3 2 1 6 6 H 1.07993 * 120.00653 * 240.00159 * 5 3 2 7 7 C 1.37881 * 119.99492 * 60.00708 * 5 3 2 8 8 N 1.31517 * 119.99965 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00076 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47202 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47440 * 119.99712 * 9 7 5 12 12 H 1.48497 * 109.47356 * 239.99986 * 9 7 5 13 13 N 1.46902 * 109.46651 * 301.82678 * 3 2 1 14 14 C 1.46851 * 110.99756 * 305.48899 * 13 3 2 15 15 C 1.53033 * 109.52630 * 174.20020 * 14 13 3 16 16 H 1.09000 * 109.50381 * 299.15872 * 15 14 13 17 17 F 1.39902 * 109.50767 * 179.08092 * 15 14 13 18 18 C 1.53114 * 109.31138 * 59.11666 * 15 14 13 19 19 C 1.53123 * 109.16131 * 302.36778 * 18 15 14 20 20 H 1.08991 * 109.50353 * 297.70907 * 19 18 15 21 21 N 1.46898 * 109.50224 * 177.59349 * 19 18 15 22 22 C 1.46847 * 110.99952 * 181.23890 * 13 3 2 23 23 H 1.09009 * 109.46793 * 64.75531 * 1 2 3 24 24 H 1.09000 * 109.47470 * 184.74882 * 1 2 3 25 25 H 1.09000 * 109.47392 * 304.75464 * 1 2 3 26 26 H 1.09002 * 109.47569 * 239.99023 * 2 1 3 27 27 H 1.09004 * 109.46819 * 119.99515 * 2 1 3 28 28 H 0.97005 * 119.99912 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.49614 * 54.16343 * 14 13 3 30 30 H 1.09004 * 109.43142 * 294.19832 * 14 13 3 31 31 H 1.09000 * 109.52450 * 62.27240 * 18 15 14 32 32 H 1.09000 * 109.52761 * 182.39734 * 18 15 14 33 33 H 1.00903 * 111.00381 * 60.00427 * 21 19 18 34 34 H 1.00902 * 111.00574 * 183.95607 * 21 19 18 35 35 H 1.08999 * 109.46065 * 65.82561 * 22 13 3 36 36 H 1.09000 * 109.45362 * 305.84983 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0328 5 6 1.5750 2.1398 1.2523 6 1 0.9516 3.0188 1.1813 7 6 1.9455 1.6556 2.4890 8 7 2.7044 0.5849 2.5756 9 14 1.3698 2.5203 4.0415 10 1 0.5341 3.6918 3.6747 11 1 0.5690 1.5788 4.8646 12 1 2.5489 2.9783 4.8193 13 7 1.5146 2.1475 -1.1768 14 6 1.8385 1.4230 -2.4124 15 6 1.1554 2.1055 -3.5996 16 1 0.0749 2.0885 -3.4567 17 9 1.4812 1.4274 -4.7791 18 6 1.6357 3.5562 -3.6947 19 6 1.3291 4.2745 -2.3776 20 1 0.2515 4.2917 -2.2148 21 7 1.8385 5.6509 -2.4395 22 6 2.0080 3.5297 -1.2259 23 1 -0.3633 0.4383 -0.9296 24 1 -0.3634 -1.0241 0.0851 25 1 -0.3634 0.5858 0.8443 26 1 1.8934 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.9647 0.2440 3.4456 29 1 1.4872 0.3941 -2.3336 30 1 2.9181 1.4274 -2.5629 31 1 2.7102 3.5730 -3.8771 32 1 1.1195 4.0580 -4.5131 33 1 1.4072 6.1626 -3.1947 34 1 1.7058 6.1257 -1.5590 35 1 3.0867 3.5249 -1.3824 36 1 1.7798 4.0303 -0.2850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246570992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:27 Heat of formation + Delta-G solvation = -54.758827 kcal Electronic energy + Delta-G solvation = -17333.080655 eV Core-core repulsion = 14572.939233 eV Total energy + Delta-G solvation = -2760.141422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.35105 -38.56280 -35.41562 -32.91797 -31.26077 -30.45733 -27.83915 -26.46265 -24.14738 -22.53817 -21.85460 -19.65018 -18.98002 -16.38347 -15.82582 -15.69411 -15.59504 -14.99709 -14.58598 -14.38604 -13.82768 -13.35040 -13.19722 -12.74505 -12.61344 -12.09718 -11.81960 -11.67445 -11.13218 -11.01254 -10.86944 -10.68157 -10.49024 -10.29727 -10.08240 -9.94740 -9.61788 -9.43299 -8.85940 -8.55417 -8.44256 -7.27642 -6.04524 -4.08507 3.26608 3.35172 3.37960 4.26074 4.40640 4.81087 4.97966 5.05593 5.19585 5.27225 5.31792 5.50423 5.75777 5.86789 6.09218 6.11262 6.18814 6.42383 6.44922 6.53309 6.56139 6.64141 6.73747 7.07001 7.19452 7.30130 7.35016 7.55111 7.60911 7.69247 7.78804 8.10487 8.27482 8.50842 8.96032 9.55485 11.01898 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.008950 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.755658 B = 3127.709964 C = 3809.639150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.525 5.525 14 C 0.027 3.973 15 C 0.094 3.906 16 H 0.087 0.913 17 F -0.219 7.219 18 C -0.135 4.135 19 C 0.095 3.905 20 H 0.044 0.956 21 N -0.846 5.846 22 C 0.068 3.932 23 H 0.038 0.962 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.015 0.985 27 H 0.094 0.906 28 H 0.260 0.740 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.336 0.664 34 H 0.345 0.655 35 H 0.030 0.970 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 4.794 -8.580 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C 0.114 3.886 4 H 0.017 0.983 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.251 5.251 14 C -0.102 4.102 15 C 0.057 3.943 16 H 0.105 0.895 17 F -0.200 7.200 18 C -0.173 4.173 19 C -0.017 4.017 20 H 0.062 0.938 21 N -0.377 5.377 22 C -0.060 4.060 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.048 0.952 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.026 4.331 -8.544 10.045 hybrid contribution -0.318 0.595 0.908 1.131 sum -3.343 4.925 -7.636 9.682 Atomic orbital electron populations 1.21481 0.97205 0.97808 1.01396 1.21632 0.95233 0.98122 1.00377 1.19272 0.92689 0.90716 0.85878 0.98257 1.21037 1.31028 1.11915 0.89485 0.91972 1.24904 0.95169 0.95087 0.98967 1.69884 1.36315 1.22538 1.24259 0.86503 0.78412 0.79597 0.83266 1.19812 1.21059 1.21182 1.61911 1.60280 1.01133 1.01779 1.22614 0.97819 0.99371 0.90399 1.21541 1.00901 0.90871 0.81016 0.89504 1.92765 1.94751 1.82144 1.50328 1.22130 1.02786 0.94455 0.97934 1.21274 0.97165 0.88382 0.94850 0.93813 1.58610 1.66036 1.03372 1.09645 1.21927 0.96380 0.90205 0.97529 0.94278 0.96401 0.92083 0.96613 0.88729 0.92994 0.89423 0.94990 0.90576 0.91775 0.85181 0.84247 0.95170 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.43 37.16 0.35 -2.24 16 2 C -0.12 -2.69 4.95 -26.73 -0.13 -2.82 16 3 C 0.22 5.31 1.76 -68.87 -0.12 5.19 16 4 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 5 C -0.50 -12.83 6.61 -34.44 -0.23 -13.05 16 6 H 0.06 1.61 6.79 -52.49 -0.36 1.26 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.64 11.31 55.43 0.63 -24.01 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.53 -10.70 3.79 -228.08 -0.86 -11.56 16 14 C 0.03 0.50 4.61 -3.83 -0.02 0.48 16 15 C 0.09 1.49 4.04 -26.66 -0.11 1.38 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 F -0.22 -3.61 17.09 2.25 0.04 -3.57 16 18 C -0.13 -1.96 5.32 -26.61 -0.14 -2.10 16 19 C 0.09 1.43 3.41 -67.63 -0.23 1.20 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 21 N -0.85 -10.85 9.25 -4.60 -0.04 -10.89 16 22 C 0.07 1.29 4.81 -3.83 -0.02 1.27 16 23 H 0.04 0.78 7.28 -51.92 -0.38 0.40 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 26 H 0.02 0.34 6.31 -51.93 -0.33 0.01 16 27 H 0.09 2.47 6.02 -51.93 -0.31 2.16 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.09 1.65 5.64 -51.93 -0.29 1.35 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.34 3.52 9.04 -39.29 -0.36 3.16 16 34 H 0.34 4.13 9.00 -39.29 -0.35 3.78 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.77 6.38 -51.93 -0.33 1.44 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -26.94 279.55 -7.39 -34.33 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.59 Total: 5.01 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.74 Total: -9.21 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.28 Total: -46.47 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.94 -7.39 -34.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246570992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.431 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds