Wall clock time and date at job start Sun Mar 29 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47405 * 2 1 4 4 H 1.09002 * 109.47253 * 181.82859 * 3 2 1 5 5 C 1.50694 * 109.47547 * 61.82052 * 3 2 1 6 6 H 1.07993 * 120.00653 * 240.00159 * 5 3 2 7 7 C 1.37881 * 119.99492 * 60.00708 * 5 3 2 8 8 N 1.31517 * 119.99965 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00076 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47202 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47440 * 119.99712 * 9 7 5 12 12 H 1.48497 * 109.47356 * 239.99986 * 9 7 5 13 13 N 1.46902 * 109.46651 * 301.82678 * 3 2 1 14 14 C 1.46851 * 110.99756 * 305.48899 * 13 3 2 15 15 C 1.53033 * 109.52630 * 174.20020 * 14 13 3 16 16 H 1.09000 * 109.50381 * 299.15872 * 15 14 13 17 17 F 1.39902 * 109.50767 * 179.08092 * 15 14 13 18 18 C 1.53114 * 109.31138 * 59.11666 * 15 14 13 19 19 C 1.53123 * 109.16131 * 302.36778 * 18 15 14 20 20 H 1.08991 * 109.50353 * 297.70907 * 19 18 15 21 21 N 1.46898 * 109.50224 * 177.59349 * 19 18 15 22 22 C 1.46847 * 110.99952 * 181.23890 * 13 3 2 23 23 H 1.09009 * 109.46793 * 64.75531 * 1 2 3 24 24 H 1.09000 * 109.47470 * 184.74882 * 1 2 3 25 25 H 1.09000 * 109.47392 * 304.75464 * 1 2 3 26 26 H 1.09002 * 109.47569 * 239.99023 * 2 1 3 27 27 H 1.09004 * 109.46819 * 119.99515 * 2 1 3 28 28 H 0.97005 * 119.99912 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.49614 * 54.16343 * 14 13 3 30 30 H 1.09004 * 109.43142 * 294.19832 * 14 13 3 31 31 H 1.09000 * 109.52450 * 62.27240 * 18 15 14 32 32 H 1.09000 * 109.52761 * 182.39734 * 18 15 14 33 33 H 1.00903 * 111.00381 * 60.00427 * 21 19 18 34 34 H 1.00902 * 111.00574 * 183.95607 * 21 19 18 35 35 H 1.08999 * 109.46065 * 65.82561 * 22 13 3 36 36 H 1.09000 * 109.45362 * 305.84983 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0328 5 6 1.5750 2.1398 1.2523 6 1 0.9516 3.0188 1.1813 7 6 1.9455 1.6556 2.4890 8 7 2.7044 0.5849 2.5756 9 14 1.3698 2.5203 4.0415 10 1 0.5341 3.6918 3.6747 11 1 0.5690 1.5788 4.8646 12 1 2.5489 2.9783 4.8193 13 7 1.5146 2.1475 -1.1768 14 6 1.8385 1.4230 -2.4124 15 6 1.1554 2.1055 -3.5996 16 1 0.0749 2.0885 -3.4567 17 9 1.4812 1.4274 -4.7791 18 6 1.6357 3.5562 -3.6947 19 6 1.3291 4.2745 -2.3776 20 1 0.2515 4.2917 -2.2148 21 7 1.8385 5.6509 -2.4395 22 6 2.0080 3.5297 -1.2259 23 1 -0.3633 0.4383 -0.9296 24 1 -0.3634 -1.0241 0.0851 25 1 -0.3634 0.5858 0.8443 26 1 1.8934 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.9647 0.2440 3.4456 29 1 1.4872 0.3941 -2.3336 30 1 2.9181 1.4274 -2.5629 31 1 2.7102 3.5730 -3.8771 32 1 1.1195 4.0580 -4.5131 33 1 1.4072 6.1626 -3.1947 34 1 1.7058 6.1257 -1.5590 35 1 3.0867 3.5249 -1.3824 36 1 1.7798 4.0303 -0.2850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246570992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:26 Heat of formation + Delta-G solvation = -73.073250 kcal Electronic energy + Delta-G solvation = -17333.874828 eV Core-core repulsion = 14572.939233 eV Total energy + Delta-G solvation = -2760.935595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.64924 -40.09970 -36.98172 -34.58933 -32.94899 -32.02374 -29.22173 -28.29856 -25.91075 -24.17473 -23.27703 -21.10251 -20.69704 -18.23669 -17.51765 -17.01167 -16.83096 -16.39514 -16.20426 -15.98029 -15.26248 -14.98710 -14.69234 -14.33530 -14.21865 -13.70145 -13.43155 -13.21686 -12.86881 -12.68807 -12.49472 -12.39621 -12.09362 -11.93029 -11.73805 -11.58134 -11.38360 -11.06258 -10.78848 -10.46391 -9.61639 -9.02747 -8.08291 -6.18359 1.41761 1.44638 1.54707 2.42539 2.94108 3.21489 3.45211 3.70613 3.74203 3.93887 3.97648 4.25631 4.40589 4.49378 4.59359 4.69317 4.72494 4.75955 4.85845 4.94158 5.02649 5.08605 5.22375 5.26110 5.43416 5.46638 5.72281 5.75764 5.86191 6.17798 6.31112 6.34854 6.65606 6.66683 6.93087 7.49118 8.97642 Molecular weight = 230.15amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.008950 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.755658 B = 3127.709964 C = 3809.639150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 C 0.225 3.775 4 H -0.045 1.045 5 C -0.500 4.500 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.521 5.521 14 C 0.026 3.974 15 C 0.102 3.898 16 H 0.104 0.896 17 F -0.220 7.220 18 C -0.129 4.129 19 C 0.108 3.892 20 H 0.052 0.948 21 N -0.848 5.848 22 C 0.070 3.930 23 H 0.053 0.947 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.355 0.645 34 H 0.350 0.650 35 H 0.009 0.991 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 5.928 -9.647 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.150 4.150 3 C 0.118 3.882 4 H -0.028 1.028 5 C -0.538 4.538 6 H 0.078 0.922 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.246 5.246 14 C -0.103 4.103 15 C 0.065 3.935 16 H 0.122 0.878 17 F -0.201 7.201 18 C -0.167 4.167 19 C -0.004 4.004 20 H 0.070 0.930 21 N -0.380 5.380 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.027 0.973 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.582 5.489 -9.638 12.000 hybrid contribution 0.225 0.237 1.204 1.247 sum -4.357 5.727 -8.434 11.087 Atomic orbital electron populations 1.21340 0.95286 0.98796 1.01208 1.21509 0.96809 0.97265 0.99438 1.19055 0.90059 0.91781 0.87264 1.02790 1.21227 1.30538 1.11727 0.90313 0.92183 1.25635 0.95373 0.95716 1.01837 1.70024 1.37432 1.23816 1.24751 0.85554 0.77891 0.78771 0.79718 1.18882 1.20872 1.21226 1.61858 1.59577 1.01713 1.01405 1.22659 0.97386 0.99501 0.90782 1.21476 1.01397 0.91106 0.79535 0.87778 1.92768 1.94843 1.82322 1.50178 1.22089 1.02459 0.93667 0.98487 1.21037 0.96926 0.89146 0.93272 0.93033 1.58519 1.66225 1.02531 1.10771 1.21920 0.95566 0.89706 0.98676 0.92766 0.94497 0.94103 0.95438 0.91776 0.93118 0.89786 0.96444 0.91680 0.88726 0.83107 0.83620 0.97300 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.43 71.98 0.68 -3.86 16 2 C -0.11 -5.28 4.95 30.59 0.15 -5.12 16 3 C 0.23 11.14 1.76 44.17 0.08 11.22 16 4 H -0.05 -2.60 8.14 -2.39 -0.02 -2.62 16 5 C -0.50 -26.23 6.61 25.60 0.17 -26.06 16 6 H 0.06 3.13 6.79 -2.91 -0.02 3.11 16 7 C 0.01 0.69 5.30 84.66 0.45 1.14 16 8 N -0.92 -52.21 11.31 21.45 0.24 -51.96 16 9 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.52 -21.15 3.79 -875.50 -3.32 -24.47 16 14 C 0.03 0.93 4.61 86.32 0.40 1.33 16 15 C 0.10 2.97 4.04 30.64 0.12 3.10 16 16 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 17 F -0.22 -6.72 17.09 44.97 0.77 -5.95 16 18 C -0.13 -3.39 5.32 30.67 0.16 -3.22 16 19 C 0.11 3.02 3.41 44.97 0.15 3.17 16 20 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 21 N -0.85 -19.66 9.25 -168.46 -1.56 -21.21 16 22 C 0.07 2.63 4.81 86.33 0.42 3.05 16 23 H 0.05 2.06 7.28 -2.38 -0.02 2.05 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.85 7.12 -2.39 -0.02 1.83 16 26 H 0.03 1.20 6.31 -2.39 -0.02 1.18 16 27 H 0.06 3.44 6.02 -2.38 -0.01 3.43 16 28 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 29 H 0.08 3.08 5.64 -2.39 -0.01 3.07 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.35 6.20 9.04 -89.69 -0.81 5.39 16 34 H 0.35 7.67 9.00 -89.69 -0.81 6.87 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.07 2.84 6.38 -2.39 -0.02 2.82 16 Total: -1.00 -58.31 279.55 0.41 -57.90 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.54 Total: 16.19 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 2.78 Total: -15.26 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -4.63 Total: -97.65 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.77 Total: -5.95 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -58.31 0.41 -57.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246570992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.174 kcal (2) G-P(sol) polarization free energy of solvation -58.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds