Wall clock time and date at job start Sun Mar 29 2020 21:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99889 * 2 1 4 4 C 1.50706 * 120.00296 * 0.06565 * 3 2 1 5 5 C 1.53000 * 109.47157 * 84.92849 * 4 3 2 6 6 C 1.50696 * 109.46775 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00407 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99907 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00472 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99780 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47435 * 89.99706 * 10 8 6 12 12 H 1.48501 * 109.47228 * 209.99603 * 10 8 6 13 13 H 1.48499 * 109.47246 * 329.99409 * 10 8 6 14 14 C 1.38220 * 120.00045 * 179.97438 * 3 2 1 15 15 C 1.38255 * 119.99681 * 0.07174 * 14 3 2 16 16 C 1.38207 * 120.00357 * 359.97438 * 15 14 3 17 17 C 1.38204 * 120.00240 * 180.08530 * 2 1 3 18 18 C 1.50708 * 119.99852 * 359.97438 * 17 2 1 19 19 C 1.52995 * 117.49778 * 188.72178 * 18 17 2 20 20 C 1.52990 * 117.49935 * 120.06241 * 18 17 2 21 21 H 1.09000 * 109.47207 * 269.91054 * 1 2 3 22 22 H 1.09003 * 109.47262 * 29.90876 * 1 2 3 23 23 H 1.09000 * 109.47406 * 149.90886 * 1 2 3 24 24 H 1.08999 * 109.46917 * 204.93635 * 4 3 2 25 25 H 1.08996 * 109.46538 * 324.93266 * 4 3 2 26 26 H 1.08998 * 109.47154 * 300.00489 * 5 4 3 27 27 H 1.08999 * 109.46803 * 60.00284 * 5 4 3 28 28 H 0.97001 * 120.00514 * 180.02562 * 9 8 6 29 29 H 1.08000 * 119.99660 * 180.34106 * 14 3 2 30 30 H 1.08000 * 119.99309 * 179.97438 * 15 14 3 31 31 H 1.07991 * 120.00421 * 179.97438 * 16 15 14 32 32 H 1.08997 * 115.54790 * 334.38719 * 18 17 2 33 33 H 1.09006 * 117.50404 * 0.02562 * 19 18 17 34 34 H 1.09007 * 117.50042 * 145.01621 * 19 18 17 35 35 H 1.09004 * 117.50272 * 214.97733 * 20 18 17 36 36 H 1.09003 * 117.50555 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5025 0.0015 5 6 1.0808 2.8796 1.4389 6 6 0.3268 4.1844 1.4403 7 1 0.1268 4.6935 0.5091 8 6 -0.1087 4.7277 2.6303 9 7 -0.7663 5.8667 2.6317 10 14 0.2366 3.8467 4.2410 11 1 1.5354 4.3114 4.7909 12 1 -0.8471 4.1461 5.2111 13 1 0.2958 2.3824 4.0014 14 6 3.5805 1.1974 0.0005 15 6 4.2717 0.0000 -0.0004 16 6 3.5807 -1.1969 -0.0014 17 6 2.1981 -1.1969 -0.0018 18 6 1.4446 -2.5020 -0.0031 19 6 2.2532 -3.7847 0.2007 20 6 1.6796 -3.4522 -1.1789 21 1 -0.3633 -0.0016 1.0277 22 1 -0.3634 0.8908 -0.5124 23 1 -0.3634 -0.8892 -0.5152 24 1 2.0697 3.2833 -0.4320 25 1 0.5341 2.3969 -0.5881 26 1 0.4559 2.0988 1.8723 27 1 1.9914 2.9852 2.0285 28 1 -1.0723 6.2491 3.4689 29 1 4.1204 2.1327 0.0061 30 1 5.3517 0.0001 -0.0004 31 1 4.1206 -2.1322 -0.0026 32 1 0.4417 -2.4663 0.4224 33 1 3.3301 -3.6847 0.3363 34 1 1.7821 -4.5931 0.7601 35 1 0.8315 -4.0420 -1.5268 36 1 2.3790 -3.1333 -1.9519 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:03 Heat of formation + Delta-G solvation = 26.990148 kcal Electronic energy + Delta-G solvation = -15484.087982 eV Core-core repulsion = 13125.967935 eV Total energy + Delta-G solvation = -2358.120047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78814 -36.95174 -34.09121 -32.53487 -31.65163 -29.25427 -26.72861 -25.16660 -23.49777 -22.50327 -21.16761 -20.28647 -19.15059 -16.83685 -16.43524 -15.81653 -14.75780 -14.39660 -14.24886 -13.67481 -13.48851 -12.81223 -12.73888 -12.52824 -12.09922 -11.97344 -11.89870 -11.65664 -11.35791 -11.09163 -10.85041 -10.64476 -10.51924 -10.32381 -10.07279 -9.75695 -9.65551 -9.15604 -8.52434 -8.16137 -8.08818 -6.03577 -4.01457 1.62661 1.73831 3.32040 3.39360 3.44670 3.70326 4.19968 4.46644 4.57807 4.82476 4.95699 5.07690 5.21228 5.30890 5.34850 5.39792 5.52986 5.58286 5.73132 5.78890 5.92736 5.99306 6.01220 6.06911 6.15744 6.32415 6.39889 6.49528 6.58560 6.80363 6.86012 6.88423 7.08507 7.31312 7.39822 7.48809 7.80288 8.54292 9.01285 9.59324 11.09819 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.006218 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.478045 B = 4502.144976 C = 4686.112143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 C -0.061 4.061 4 C -0.073 4.073 5 C -0.004 4.004 6 C -0.520 4.520 7 H 0.072 0.928 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.877 3.123 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.265 1.265 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.111 4.111 19 C -0.180 4.180 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -17.336 -5.772 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.061 4.061 4 C -0.110 4.110 5 C -0.042 4.042 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.189 1.189 14 C -0.140 4.140 15 C -0.142 4.142 16 C -0.153 4.153 17 C -0.057 4.057 18 C -0.129 4.129 19 C -0.217 4.217 20 C -0.208 4.208 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.483 -17.205 -5.654 19.236 hybrid contribution 0.246 -0.295 1.024 1.093 sum 6.729 -17.501 -4.631 19.313 Atomic orbital electron populations 1.20882 0.91373 1.02588 1.02624 1.19565 0.96101 0.91736 1.00308 1.20227 0.93722 0.95741 0.96415 1.20674 0.98590 0.91237 1.00466 1.19518 0.96238 0.97057 0.91357 1.21150 1.34897 1.04813 0.94912 0.90960 1.24999 0.94614 0.94669 0.99041 1.69912 1.38706 1.18680 1.27007 0.86821 0.78040 0.80969 0.83777 1.20297 1.21377 1.18948 1.21084 0.93935 0.97905 1.01100 1.20990 0.99252 0.92540 1.01444 1.20824 0.93513 0.97701 1.03308 1.18895 0.92964 0.92502 1.01368 1.21032 0.99967 0.88483 1.03437 1.23051 1.00178 0.98595 0.99850 1.22996 1.03401 1.02709 0.91673 0.91069 0.90523 0.92141 0.91857 0.91288 0.96397 0.97079 0.92756 0.86186 0.86683 0.86744 0.86900 0.88504 0.88720 0.88716 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.70 36.01 0.31 -1.51 16 2 C -0.08 -1.29 5.88 -104.63 -0.62 -1.91 16 3 C -0.06 -1.10 5.13 -104.62 -0.54 -1.64 16 4 C -0.07 -1.47 4.78 -27.88 -0.13 -1.61 16 5 C 0.00 -0.11 4.02 -27.88 -0.11 -0.22 16 6 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 7 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 10 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 14 C -0.12 -2.01 9.68 -39.58 -0.38 -2.39 16 15 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 16 C -0.14 -1.89 9.30 -39.58 -0.37 -2.26 16 17 C -0.06 -0.85 5.61 -104.62 -0.59 -1.43 16 18 C -0.11 -1.34 5.15 -91.78 -0.47 -1.82 16 19 C -0.18 -1.78 9.86 -26.70 -0.26 -2.05 16 20 C -0.17 -1.71 10.17 -26.70 -0.27 -1.98 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 22 H 0.08 1.23 6.03 -51.93 -0.31 0.92 16 23 H 0.06 0.78 6.65 -51.93 -0.35 0.44 16 24 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 25 H 0.07 1.37 6.16 -51.93 -0.32 1.05 16 26 H 0.02 0.44 6.97 -51.93 -0.36 0.07 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.32 6.02 -52.49 -0.32 1.01 16 32 H 0.11 1.33 6.90 -51.93 -0.36 0.97 16 33 H 0.10 0.93 6.18 -51.93 -0.32 0.60 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 291.16 15.07 4.39 4.39 Total: -1.00 -30.84 291.16 -9.04 -39.88 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.27 Total: -0.13 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -4.26 Total: -34.31 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.84 -9.04 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.866 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds