Wall clock time and date at job start Sun Mar 29 2020 21:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99889 * 2 1 4 4 C 1.50706 * 120.00296 * 0.06565 * 3 2 1 5 5 C 1.53000 * 109.47157 * 84.92849 * 4 3 2 6 6 C 1.50696 * 109.46775 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00407 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99907 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00472 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99780 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47435 * 89.99706 * 10 8 6 12 12 H 1.48501 * 109.47228 * 209.99603 * 10 8 6 13 13 H 1.48499 * 109.47246 * 329.99409 * 10 8 6 14 14 C 1.38220 * 120.00045 * 179.97438 * 3 2 1 15 15 C 1.38255 * 119.99681 * 0.07174 * 14 3 2 16 16 C 1.38207 * 120.00357 * 359.97438 * 15 14 3 17 17 C 1.38204 * 120.00240 * 180.08530 * 2 1 3 18 18 C 1.50708 * 119.99852 * 359.97438 * 17 2 1 19 19 C 1.52995 * 117.49778 * 188.72178 * 18 17 2 20 20 C 1.52990 * 117.49935 * 120.06241 * 18 17 2 21 21 H 1.09000 * 109.47207 * 269.91054 * 1 2 3 22 22 H 1.09003 * 109.47262 * 29.90876 * 1 2 3 23 23 H 1.09000 * 109.47406 * 149.90886 * 1 2 3 24 24 H 1.08999 * 109.46917 * 204.93635 * 4 3 2 25 25 H 1.08996 * 109.46538 * 324.93266 * 4 3 2 26 26 H 1.08998 * 109.47154 * 300.00489 * 5 4 3 27 27 H 1.08999 * 109.46803 * 60.00284 * 5 4 3 28 28 H 0.97001 * 120.00514 * 180.02562 * 9 8 6 29 29 H 1.08000 * 119.99660 * 180.34106 * 14 3 2 30 30 H 1.08000 * 119.99309 * 179.97438 * 15 14 3 31 31 H 1.07991 * 120.00421 * 179.97438 * 16 15 14 32 32 H 1.08997 * 115.54790 * 334.38719 * 18 17 2 33 33 H 1.09006 * 117.50404 * 0.02562 * 19 18 17 34 34 H 1.09007 * 117.50042 * 145.01621 * 19 18 17 35 35 H 1.09004 * 117.50272 * 214.97733 * 20 18 17 36 36 H 1.09003 * 117.50555 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4448 2.5025 0.0015 5 6 1.0808 2.8796 1.4389 6 6 0.3268 4.1844 1.4403 7 1 0.1268 4.6935 0.5091 8 6 -0.1087 4.7277 2.6303 9 7 -0.7663 5.8667 2.6317 10 14 0.2366 3.8467 4.2410 11 1 1.5354 4.3114 4.7909 12 1 -0.8471 4.1461 5.2111 13 1 0.2958 2.3824 4.0014 14 6 3.5805 1.1974 0.0005 15 6 4.2717 0.0000 -0.0004 16 6 3.5807 -1.1969 -0.0014 17 6 2.1981 -1.1969 -0.0018 18 6 1.4446 -2.5020 -0.0031 19 6 2.2532 -3.7847 0.2007 20 6 1.6796 -3.4522 -1.1789 21 1 -0.3633 -0.0016 1.0277 22 1 -0.3634 0.8908 -0.5124 23 1 -0.3634 -0.8892 -0.5152 24 1 2.0697 3.2833 -0.4320 25 1 0.5341 2.3969 -0.5881 26 1 0.4559 2.0988 1.8723 27 1 1.9914 2.9852 2.0285 28 1 -1.0723 6.2491 3.4689 29 1 4.1204 2.1327 0.0061 30 1 5.3517 0.0001 -0.0004 31 1 4.1206 -2.1322 -0.0026 32 1 0.4417 -2.4663 0.4224 33 1 3.3301 -3.6847 0.3363 34 1 1.7821 -4.5931 0.7601 35 1 0.8315 -4.0420 -1.5268 36 1 2.3790 -3.1333 -1.9519 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:03 Heat of formation + Delta-G solvation = 11.631593 kcal Electronic energy + Delta-G solvation = -15484.753979 eV Core-core repulsion = 13125.967935 eV Total energy + Delta-G solvation = -2358.786044 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92397 -37.94716 -35.80882 -34.24215 -33.12833 -30.84686 -28.01642 -26.83762 -24.63521 -23.29151 -22.88571 -21.51942 -20.40840 -18.93110 -17.51506 -17.00918 -16.39454 -15.83761 -15.37724 -15.01045 -14.87193 -14.52739 -14.43217 -13.94697 -13.45559 -13.26324 -13.14191 -12.95553 -12.84757 -12.38860 -12.25764 -11.96618 -11.79434 -11.67140 -11.47238 -11.38635 -11.31344 -11.07914 -10.78227 -9.37685 -9.27722 -8.31621 -6.35225 0.46934 0.52768 1.32352 1.33643 1.46332 2.33391 2.71142 3.03642 3.20626 3.65713 3.91604 4.03868 4.08572 4.17445 4.21879 4.32762 4.35936 4.46995 4.63744 4.76216 4.81287 4.86089 4.88406 4.93013 4.99663 5.06211 5.21304 5.24649 5.28327 5.30520 5.43600 5.50465 5.60347 5.66857 5.75260 5.93431 6.20346 6.26287 6.71953 7.29399 8.85157 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.006218 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.478045 B = 4502.144976 C = 4686.112143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.087 4.087 4 C -0.063 4.063 5 C 0.004 3.996 6 C -0.530 4.530 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.949 5.949 10 Si 0.945 3.055 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.252 1.252 14 C -0.139 4.139 15 C -0.121 4.121 16 C -0.133 4.133 17 C -0.057 4.057 18 C -0.137 4.137 19 C -0.167 4.167 20 C -0.161 4.161 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.010 0.990 28 H 0.267 0.733 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -20.569 -5.190 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.087 4.087 4 C -0.100 4.100 5 C -0.033 4.033 6 C -0.568 4.568 7 H 0.053 0.947 8 C -0.188 4.188 9 N -0.590 5.590 10 Si 0.768 3.232 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.176 1.176 14 C -0.157 4.157 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.057 4.057 18 C -0.155 4.155 19 C -0.204 4.204 20 C -0.197 4.197 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.950 -20.445 -5.088 22.519 hybrid contribution -0.200 0.696 0.743 1.037 sum 7.750 -19.750 -4.345 21.656 Atomic orbital electron populations 1.20846 0.91189 1.02998 1.02109 1.19742 0.96558 0.92180 1.01166 1.20052 0.94494 0.94804 0.99328 1.20432 0.98797 0.92937 0.97830 1.19379 0.95286 0.94583 0.94045 1.21471 1.35262 1.06439 0.93669 0.94655 1.25924 0.94330 0.95411 1.03116 1.70054 1.40127 1.20498 1.28300 0.85736 0.78359 0.80231 0.78844 1.19220 1.20518 1.17606 1.21232 0.93412 0.99208 1.01801 1.21326 1.00798 0.91760 0.99957 1.21221 0.93355 0.98795 1.01685 1.19206 0.93676 0.92934 0.99908 1.21050 1.00279 0.88148 1.06012 1.23170 1.00352 0.97206 0.99623 1.23073 1.03831 1.01396 0.91442 0.91997 0.92087 0.89742 0.92496 0.91759 0.96433 0.97168 0.92417 0.85986 0.83705 0.83809 0.86987 0.87860 0.87185 0.87171 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.70 71.24 0.62 -2.92 16 2 C -0.10 -3.15 5.88 -19.87 -0.12 -3.27 16 3 C -0.09 -3.13 5.13 -19.86 -0.10 -3.24 16 4 C -0.06 -2.63 4.78 29.85 0.14 -2.49 16 5 C 0.00 0.22 4.02 29.85 0.12 0.34 16 6 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 7 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 8 C 0.01 0.55 5.47 84.66 0.46 1.01 16 9 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 10 Si 0.94 45.72 27.47 68.60 1.88 47.60 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 14 C -0.14 -4.42 9.68 22.27 0.22 -4.20 16 15 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 16 C -0.13 -3.26 9.30 22.27 0.21 -3.05 16 17 C -0.06 -1.56 5.61 -19.86 -0.11 -1.67 16 18 C -0.14 -2.91 5.15 -11.54 -0.06 -2.97 16 19 C -0.17 -2.63 9.86 30.61 0.30 -2.33 16 20 C -0.16 -2.63 10.17 30.61 0.31 -2.32 16 21 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.06 2.02 6.03 -2.39 -0.01 2.01 16 23 H 0.08 2.10 6.65 -2.39 -0.02 2.09 16 24 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 25 H 0.06 2.69 6.16 -2.39 -0.01 2.67 16 26 H 0.02 0.86 6.97 -2.39 -0.02 0.84 16 27 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 28 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 2.65 6.02 -2.91 -0.02 2.63 16 32 H 0.11 2.38 6.90 -2.39 -0.02 2.36 16 33 H 0.10 1.50 6.18 -2.38 -0.01 1.48 16 34 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -67.43 291.16 5.64 -61.79 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.00 Total: 12.00 kcal Atomic # 6 Polarization: -63.70 SS G_CDS: 2.46 Total: -61.23 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -67.43 5.64 -61.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.421 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds