Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34227 * 125.04134 * 2 1 4 4 C 1.46389 * 106.86325 * 180.02562 * 3 2 1 5 5 C 1.39701 * 134.31530 * 180.02562 * 4 3 2 6 6 C 1.38194 * 118.03346 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.28951 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47056 * 90.00486 * 7 6 5 9 9 C 1.50700 * 109.47056 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00535 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00245 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00578 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47057 * 59.99578 * 13 11 9 15 15 H 1.48494 * 109.47540 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46828 * 299.99991 * 13 11 9 17 17 C 1.38666 * 119.41635 * 0.02562 * 6 5 4 18 18 N 1.31582 * 121.58006 * 359.97438 * 17 6 5 19 19 C 1.32655 * 121.67526 * 359.73205 * 18 17 6 20 20 N 1.36917 * 125.04274 * 180.02562 * 2 1 3 21 21 H 0.97001 * 124.98663 * 359.93198 * 20 2 1 22 22 H 1.08998 * 109.47263 * 269.98247 * 1 2 3 23 23 H 1.08997 * 109.47322 * 29.98365 * 1 2 3 24 24 H 1.09001 * 109.47007 * 149.98129 * 1 2 3 25 25 H 1.08003 * 126.56561 * 0.03830 * 3 2 1 26 26 H 1.07997 * 120.98204 * 0.02562 * 5 4 3 27 27 H 1.09003 * 109.47424 * 210.00740 * 7 6 5 28 28 H 1.08995 * 109.47409 * 330.00358 * 7 6 5 29 29 H 1.08998 * 109.47566 * 299.99739 * 8 7 6 30 30 H 1.08998 * 109.47190 * 60.00211 * 8 7 6 31 31 H 0.96992 * 119.99760 * 179.97438 * 12 11 9 32 32 H 1.08004 * 119.20862 * 180.02562 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0990 0.0000 4 6 3.6685 0.6423 -0.0006 5 6 4.9076 1.2875 -0.0005 6 6 6.0470 0.5055 -0.0007 7 6 7.4101 1.1484 -0.0011 8 6 7.8717 1.3659 1.4412 9 6 9.2345 2.0094 1.4408 10 1 9.7227 2.2397 0.5053 11 6 9.8586 2.3031 2.6346 12 7 9.2643 2.0222 3.7738 13 14 11.5480 3.1000 2.6342 14 1 11.4782 4.4080 1.9345 15 1 11.9961 3.3113 4.0341 16 1 12.5126 2.2147 1.9334 17 6 5.9251 -0.8757 -0.0016 18 7 4.7479 -1.4636 -0.0018 19 6 3.6204 -0.7648 0.0042 20 7 2.2932 -1.1210 -0.0005 21 1 1.9619 -2.0326 0.0000 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.9369 2.1238 0.0006 26 1 4.9731 2.3655 0.0007 27 1 8.1182 0.4985 -0.5152 28 1 7.3589 2.1083 -0.5149 29 1 7.1637 2.0159 1.9553 30 1 7.9230 0.4060 1.9550 31 1 9.7035 2.2285 4.6137 32 1 6.8179 -1.4836 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = 46.369503 kcal Electronic energy + Delta-G solvation = -14806.905865 eV Core-core repulsion = 12346.085826 eV Total energy + Delta-G solvation = -2460.820038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28397 -37.95899 -34.21732 -32.62670 -31.48457 -31.12185 -28.68098 -26.93040 -24.90206 -22.55138 -21.86476 -20.40549 -19.91917 -17.92047 -16.36601 -15.91021 -15.31224 -15.02964 -14.45877 -13.90962 -13.40539 -13.33691 -12.91720 -12.67333 -12.57248 -12.45711 -12.31939 -11.73917 -11.52881 -10.94949 -10.87344 -10.60964 -10.04967 -9.87690 -9.50387 -9.16575 -8.90144 -8.32210 -7.83519 -7.73266 -5.97039 -4.00331 1.30096 1.81066 2.79511 2.91188 3.35476 3.39946 3.42225 4.28377 4.48623 4.61362 4.83510 4.96707 5.15809 5.28836 5.38373 5.41840 5.51881 5.54213 5.66006 5.92838 6.03363 6.19747 6.38843 6.66070 6.74010 6.77963 6.92919 7.04834 7.29655 7.49285 7.70590 7.83984 8.02814 8.35765 8.43144 9.06730 9.63650 11.13934 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055038 B = 0.004746 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.620111 B = 5898.814254 C = 6060.652471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.077 3.923 3 C -0.195 4.195 4 C -0.148 4.148 5 C -0.037 4.037 6 C -0.133 4.133 7 C -0.069 4.069 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.141 3.859 18 N -0.504 5.504 19 C 0.270 3.730 20 N -0.584 5.584 21 H 0.413 0.587 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.146 0.854 26 H 0.132 0.868 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -3.801 -8.025 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.221 4.221 4 C -0.154 4.154 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.024 4.024 18 N -0.217 5.217 19 C 0.038 3.962 20 N -0.192 5.192 21 H 0.250 0.750 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.164 0.836 26 H 0.150 0.850 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.888 -4.810 -7.836 18.356 hybrid contribution 0.885 0.857 0.244 1.256 sum -15.003 -3.953 -7.592 17.273 Atomic orbital electron populations 1.20442 0.87542 1.03567 1.03126 1.20221 0.93183 0.85498 1.04170 1.21391 0.90241 0.97765 1.12690 1.19859 0.94295 0.93525 1.07745 1.20865 0.89537 1.00116 0.95848 1.21073 0.97412 0.94531 1.00605 1.20696 0.89487 0.98844 1.01720 1.19095 0.95767 0.97165 0.88835 1.21223 1.02465 1.40096 0.92322 0.92575 1.25026 0.97831 0.95871 0.95657 1.69968 1.38248 1.47879 0.97277 0.86655 0.84491 0.79918 0.76912 1.20242 1.21340 1.20214 1.22414 0.92884 0.92375 0.94751 1.66455 0.96621 1.40938 1.17686 1.18295 0.85259 0.90003 1.02686 1.41362 1.02915 1.08317 1.66627 0.75044 0.90474 0.89662 0.91448 0.83584 0.84979 0.91933 0.92092 0.96479 0.96408 0.92949 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.39 36.01 0.37 -0.24 16 2 C 0.08 0.90 7.08 -81.74 -0.58 0.32 16 3 C -0.20 -2.67 10.96 -37.72 -0.41 -3.09 16 4 C -0.15 -2.53 6.39 -105.11 -0.67 -3.20 16 5 C -0.04 -0.67 9.90 -39.05 -0.39 -1.05 16 6 C -0.13 -2.52 5.15 -104.48 -0.54 -3.06 16 7 C -0.07 -1.43 5.30 -27.89 -0.15 -1.57 16 8 C 0.03 0.74 4.95 -27.89 -0.14 0.60 16 9 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 12 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.14 2.57 10.82 -17.50 -0.19 2.38 16 18 N -0.50 -9.26 10.39 -12.27 -0.13 -9.39 16 19 C 0.27 4.64 8.43 -155.69 -1.31 3.33 16 20 N -0.58 -7.70 6.05 -8.43 -0.05 -7.75 16 21 H 0.41 4.25 8.96 -40.82 -0.37 3.89 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 26 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 28 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.16 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -32.82 280.60 -8.78 -41.59 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.13 Total: 0.17 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -4.41 Total: -19.08 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.56 Total: -43.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.82 -8.78 -41.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.963 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds