Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34227 * 125.04134 * 2 1 4 4 C 1.46389 * 106.86325 * 180.02562 * 3 2 1 5 5 C 1.39701 * 134.31530 * 180.02562 * 4 3 2 6 6 C 1.38194 * 118.03346 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.28951 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47056 * 90.00486 * 7 6 5 9 9 C 1.50700 * 109.47056 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00535 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00245 * 180.02562 * 9 8 7 12 12 N 1.31525 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00578 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47057 * 59.99578 * 13 11 9 15 15 H 1.48494 * 109.47540 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46828 * 299.99991 * 13 11 9 17 17 C 1.38666 * 119.41635 * 0.02562 * 6 5 4 18 18 N 1.31582 * 121.58006 * 359.97438 * 17 6 5 19 19 C 1.32655 * 121.67526 * 359.73205 * 18 17 6 20 20 N 1.36917 * 125.04274 * 180.02562 * 2 1 3 21 21 H 0.97001 * 124.98663 * 359.93198 * 20 2 1 22 22 H 1.08998 * 109.47263 * 269.98247 * 1 2 3 23 23 H 1.08997 * 109.47322 * 29.98365 * 1 2 3 24 24 H 1.09001 * 109.47007 * 149.98129 * 1 2 3 25 25 H 1.08003 * 126.56561 * 0.03830 * 3 2 1 26 26 H 1.07997 * 120.98204 * 0.02562 * 5 4 3 27 27 H 1.09003 * 109.47424 * 210.00740 * 7 6 5 28 28 H 1.08995 * 109.47409 * 330.00358 * 7 6 5 29 29 H 1.08998 * 109.47566 * 299.99739 * 8 7 6 30 30 H 1.08998 * 109.47190 * 60.00211 * 8 7 6 31 31 H 0.96992 * 119.99760 * 179.97438 * 12 11 9 32 32 H 1.08004 * 119.20862 * 180.02562 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0990 0.0000 4 6 3.6685 0.6423 -0.0006 5 6 4.9076 1.2875 -0.0005 6 6 6.0470 0.5055 -0.0007 7 6 7.4101 1.1484 -0.0011 8 6 7.8717 1.3659 1.4412 9 6 9.2345 2.0094 1.4408 10 1 9.7227 2.2397 0.5053 11 6 9.8586 2.3031 2.6346 12 7 9.2643 2.0222 3.7738 13 14 11.5480 3.1000 2.6342 14 1 11.4782 4.4080 1.9345 15 1 11.9961 3.3113 4.0341 16 1 12.5126 2.2147 1.9334 17 6 5.9251 -0.8757 -0.0016 18 7 4.7479 -1.4636 -0.0018 19 6 3.6204 -0.7648 0.0042 20 7 2.2932 -1.1210 -0.0005 21 1 1.9619 -2.0326 0.0000 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.9369 2.1238 0.0006 26 1 4.9731 2.3655 0.0007 27 1 8.1182 0.4985 -0.5152 28 1 7.3589 2.1083 -0.5149 29 1 7.1637 2.0159 1.9553 30 1 7.9230 0.4060 1.9550 31 1 9.7035 2.2285 4.6137 32 1 6.8179 -1.4836 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = 26.864492 kcal Electronic energy + Delta-G solvation = -14807.751665 eV Core-core repulsion = 12346.085826 eV Total energy + Delta-G solvation = -2461.665839 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47797 -39.24469 -36.01382 -34.36999 -32.94804 -32.08477 -30.31961 -28.04228 -26.73699 -23.97481 -23.44807 -21.76052 -21.21920 -19.14550 -18.50931 -17.18642 -16.58839 -16.48424 -16.13936 -15.30925 -14.68716 -14.45596 -14.15968 -14.11895 -14.02488 -13.72451 -13.57960 -13.16354 -12.84572 -12.77888 -12.44191 -12.37831 -11.77369 -11.67661 -11.25479 -11.11451 -10.53241 -10.34079 -9.17759 -8.88266 -8.16566 -6.28801 0.03984 0.41897 1.42933 1.46284 1.54065 1.70956 1.82409 2.43851 2.90848 3.16362 3.56184 3.75036 3.88096 4.13524 4.16246 4.27994 4.46447 4.64491 4.80614 4.83468 4.90501 4.91442 4.96124 5.15229 5.18471 5.40439 5.52280 5.56592 5.65428 5.79706 5.86922 6.03285 6.25382 6.43651 6.88441 7.05126 7.40735 8.94841 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055038 B = 0.004746 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.620111 B = 5898.814254 C = 6060.652471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.102 3.898 3 C -0.222 4.222 4 C -0.164 4.164 5 C -0.048 4.048 6 C -0.151 4.151 7 C -0.052 4.052 8 C 0.035 3.965 9 C -0.543 4.543 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.125 3.875 18 N -0.515 5.515 19 C 0.247 3.753 20 N -0.575 5.575 21 H 0.427 0.573 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.140 0.860 27 H 0.072 0.928 28 H 0.068 0.932 29 H -0.013 1.013 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.094 -3.543 -8.961 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 C -0.247 4.247 4 C -0.170 4.170 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.090 4.090 8 C -0.002 4.002 9 C -0.580 4.580 10 H 0.085 0.915 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.040 4.040 18 N -0.228 5.228 19 C 0.013 3.987 20 N -0.184 5.184 21 H 0.267 0.733 22 H 0.111 0.889 23 H 0.123 0.877 24 H 0.106 0.894 25 H 0.186 0.814 26 H 0.158 0.842 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.276 -4.568 -8.793 19.916 hybrid contribution 1.114 0.737 0.541 1.441 sum -16.162 -3.831 -8.251 18.546 Atomic orbital electron populations 1.20657 0.83474 1.05578 1.04689 1.21045 0.95287 0.84146 1.00131 1.21730 0.88643 0.99708 1.14625 1.20255 0.95573 0.93923 1.07293 1.21042 0.89968 1.00585 0.95832 1.20918 0.96819 0.95019 1.02704 1.20404 0.90805 0.99689 0.98111 1.18941 0.94735 0.94727 0.91787 1.21701 1.03408 1.40016 0.92913 0.91532 1.26012 1.02309 0.96398 0.95165 1.70121 1.40279 1.49199 0.98025 0.85476 0.79083 0.79250 0.77087 1.19015 1.21115 1.19001 1.22552 0.93548 0.92344 0.95522 1.66462 0.97042 1.41244 1.18023 1.18663 0.86385 0.90468 1.03140 1.41518 1.01570 1.09759 1.65594 0.73348 0.88912 0.87731 0.89390 0.81392 0.84243 0.90915 0.91365 0.99461 0.99251 0.92871 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.39 71.24 0.74 -0.08 16 2 C 0.10 2.09 7.08 40.85 0.29 2.38 16 3 C -0.22 -5.69 10.96 23.48 0.26 -5.43 16 4 C -0.16 -5.57 6.39 -20.18 -0.13 -5.70 16 5 C -0.05 -1.76 9.90 22.61 0.22 -1.53 16 6 C -0.15 -5.92 5.15 -19.77 -0.10 -6.03 16 7 C -0.05 -2.20 5.30 29.85 0.16 -2.04 16 8 C 0.04 1.90 4.95 29.85 0.15 2.05 16 9 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 11 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 12 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 13 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.12 4.71 10.82 84.83 0.92 5.63 16 18 N -0.51 -19.12 10.39 -192.74 -2.00 -21.12 16 19 C 0.25 8.38 8.43 133.93 1.13 9.51 16 20 N -0.58 -14.03 6.05 -180.59 -1.09 -15.12 16 21 H 0.43 7.80 8.96 -92.71 -0.83 6.97 16 22 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.07 2.87 8.09 -2.39 -0.02 2.85 16 28 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.17 5.74 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -72.33 280.60 3.84 -68.49 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.29 Total: 10.77 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.33 Total: -31.65 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -2.81 Total: -94.12 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.33 3.84 -68.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.355 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds