Wall clock time and date at job start Sun Mar 29 2020 21:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36917 * 124.98575 * 2 1 4 4 C 1.34226 * 109.91490 * 179.97438 * 3 2 1 5 5 C 1.46384 * 106.86201 * 0.02562 * 4 3 2 6 6 C 1.39693 * 134.31267 * 179.97438 * 5 4 3 7 7 C 1.38197 * 118.04157 * 179.71792 * 6 5 4 8 8 C 1.50702 * 120.30004 * 180.29915 * 7 6 5 9 9 C 1.52997 * 109.47169 * 270.27008 * 8 7 6 10 10 C 1.50696 * 109.47167 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00264 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00097 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00155 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46692 * 90.00659 * 14 12 10 16 16 H 1.48501 * 109.47364 * 210.00095 * 14 12 10 17 17 H 1.48496 * 109.47628 * 330.00519 * 14 12 10 18 18 C 1.38668 * 119.40822 * 0.57179 * 7 6 5 19 19 N 1.31588 * 121.58101 * 359.42267 * 18 7 6 20 20 C 1.32659 * 121.67449 * 0.28607 * 19 18 7 21 21 H 1.08996 * 109.47191 * 270.02172 * 1 2 3 22 22 H 1.08995 * 109.47256 * 30.02253 * 1 2 3 23 23 H 1.09000 * 109.47043 * 150.02151 * 1 2 3 24 24 H 1.08004 * 125.04127 * 0.02562 * 3 2 1 25 25 H 1.07998 * 126.56870 * 179.97438 * 4 3 2 26 26 H 1.08006 * 120.97958 * 0.02562 * 6 5 4 27 27 H 1.08997 * 109.46921 * 30.27061 * 8 7 6 28 28 H 1.09005 * 109.47270 * 150.26890 * 8 7 6 29 29 H 1.08997 * 109.47242 * 299.99857 * 9 8 7 30 30 H 1.09005 * 109.47121 * 59.99791 * 9 8 7 31 31 H 0.96993 * 120.00257 * 180.02562 * 13 12 10 32 32 H 1.08002 * 119.21285 * 179.70965 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2501 1.1218 0.0000 4 6 3.5462 0.7727 0.0006 5 6 3.5920 -0.6904 0.0003 6 6 4.6215 -1.6345 0.0002 7 6 4.2760 -2.9726 0.0060 8 6 5.3457 -4.0341 0.0129 9 6 5.7150 -4.3954 -1.4271 10 6 6.7852 -5.4564 -1.4202 11 1 7.1637 -5.8355 -0.4824 12 6 7.2803 -5.9440 -2.6110 13 7 6.8191 -5.4828 -3.7531 14 14 8.6073 -7.2587 -2.6023 15 1 7.9735 -8.6016 -2.6026 16 1 9.4572 -7.1122 -3.8113 17 1 9.4461 -7.1075 -1.3863 18 6 2.9361 -3.3299 -0.0004 19 7 1.9814 -2.4243 -0.0006 20 6 2.2530 -1.1258 -0.0003 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.8812 2.1368 0.0004 25 1 4.3930 1.4430 0.0003 26 1 5.6571 -1.3278 0.0007 27 1 6.2278 -3.6575 0.5307 28 1 4.9741 -4.9211 0.5262 29 1 4.8329 -4.7719 -1.9449 30 1 6.0866 -3.5084 -1.9404 31 1 7.1671 -5.8261 -4.5908 32 1 2.6697 -4.3765 -0.0006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:27 Heat of formation + Delta-G solvation = 59.617521 kcal Electronic energy + Delta-G solvation = -14914.240476 eV Core-core repulsion = 12453.994915 eV Total energy + Delta-G solvation = -2460.245561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26094 -37.92360 -34.14327 -33.09164 -32.08145 -29.70811 -28.57603 -26.49166 -24.68739 -23.21205 -21.85677 -20.24191 -19.92063 -17.27339 -16.51651 -16.22900 -15.46598 -15.18288 -14.45691 -13.81742 -13.45930 -13.28736 -12.99160 -12.67420 -12.51479 -12.36271 -12.23915 -11.70903 -11.50640 -10.97631 -10.89667 -10.58393 -9.98900 -9.87666 -9.43055 -9.14782 -8.88021 -8.32430 -7.91938 -7.62626 -5.97058 -4.00262 1.33501 1.81831 2.72127 2.86301 3.34137 3.40395 3.43618 4.28606 4.48688 4.59114 4.73629 4.83431 5.14517 5.20952 5.38496 5.42316 5.47559 5.58316 5.63166 5.94069 6.01013 6.13559 6.39214 6.67007 6.73308 6.82060 6.94091 7.07663 7.24751 7.40180 7.71033 7.84274 8.02948 8.35643 8.43384 9.07060 9.63832 11.13961 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054845 B = 0.004897 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.409457 B = 5716.702914 C = 5834.023219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.482 5.482 3 C 0.049 3.951 4 C -0.196 4.196 5 C -0.151 4.151 6 C -0.035 4.035 7 C -0.135 4.135 8 C -0.069 4.069 9 C 0.028 3.972 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.141 3.859 19 N -0.503 5.503 20 C 0.269 3.731 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.170 0.830 25 H 0.147 0.853 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 12.245 7.933 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.170 5.170 3 C -0.075 4.075 4 C -0.222 4.222 5 C -0.158 4.158 6 C -0.062 4.062 7 C -0.138 4.138 8 C -0.107 4.107 9 C -0.009 4.009 10 C -0.560 4.560 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.024 4.024 19 N -0.216 5.216 20 C 0.038 3.962 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.188 0.812 25 H 0.165 0.835 26 H 0.150 0.850 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.328 12.057 7.741 18.265 hybrid contribution 1.478 -0.408 -0.227 1.550 sum -9.850 11.649 7.513 17.005 Atomic orbital electron populations 1.21871 0.77226 1.03998 1.02647 1.43545 1.05889 1.03376 1.64172 1.21709 0.90377 0.90515 1.04915 1.21616 0.95987 0.92761 1.11807 1.19875 0.93393 0.94494 1.08030 1.20863 0.98425 0.91186 0.95714 1.21070 0.96509 0.95421 1.00783 1.20692 0.94102 0.94225 1.01700 1.19099 0.96429 0.96466 0.88878 1.21259 1.20969 1.21422 0.92349 0.92531 1.25024 0.96887 0.96842 0.95646 1.69975 1.43108 1.43044 0.97260 0.86600 0.81850 0.82088 0.77493 1.20668 1.21281 1.19846 1.22413 0.87713 0.97553 0.94699 1.66430 1.38592 0.98935 1.17643 1.18339 0.87854 0.87185 1.02824 0.91716 0.90356 0.89771 0.81249 0.83494 0.84990 0.92110 0.91962 0.96426 0.96481 0.93009 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 11.07 59.85 0.66 1.47 16 2 N -0.48 -6.59 3.17 -123.66 -0.39 -6.98 16 3 C 0.05 0.57 11.29 -16.70 -0.19 0.38 16 4 C -0.20 -2.65 11.09 -37.72 -0.42 -3.07 16 5 C -0.15 -2.61 6.39 -105.11 -0.67 -3.28 16 6 C -0.04 -0.64 9.90 -39.05 -0.39 -1.02 16 7 C -0.13 -2.56 5.15 -104.48 -0.54 -3.10 16 8 C -0.07 -1.42 5.30 -27.88 -0.15 -1.57 16 9 C 0.03 0.74 4.95 -27.89 -0.14 0.60 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 14 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.14 2.59 10.82 -17.50 -0.19 2.40 16 19 N -0.50 -9.28 10.39 -12.27 -0.13 -9.41 16 20 C 0.27 4.69 7.90 -155.69 -1.23 3.46 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 25 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.13 2.18 8.06 -52.48 -0.42 1.75 16 27 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 28 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.16 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -33.13 281.30 -8.41 -41.54 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.19 Total: -2.40 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -3.66 Total: -17.20 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.22 Total: -42.81 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.13 -8.41 -41.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.160 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds