Wall clock time and date at job start Sun Mar 29 2020 21:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36917 * 124.98575 * 2 1 4 4 C 1.34226 * 109.91490 * 179.97438 * 3 2 1 5 5 C 1.46384 * 106.86201 * 0.02562 * 4 3 2 6 6 C 1.39693 * 134.31267 * 179.97438 * 5 4 3 7 7 C 1.38197 * 118.04157 * 179.71792 * 6 5 4 8 8 C 1.50702 * 120.30004 * 180.29915 * 7 6 5 9 9 C 1.52997 * 109.47169 * 270.27008 * 8 7 6 10 10 C 1.50696 * 109.47167 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00143 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00264 * 179.97438 * 10 9 8 13 13 N 1.31520 * 120.00097 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00155 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46692 * 90.00659 * 14 12 10 16 16 H 1.48501 * 109.47364 * 210.00095 * 14 12 10 17 17 H 1.48496 * 109.47628 * 330.00519 * 14 12 10 18 18 C 1.38668 * 119.40822 * 0.57179 * 7 6 5 19 19 N 1.31588 * 121.58101 * 359.42267 * 18 7 6 20 20 C 1.32659 * 121.67449 * 0.28607 * 19 18 7 21 21 H 1.08996 * 109.47191 * 270.02172 * 1 2 3 22 22 H 1.08995 * 109.47256 * 30.02253 * 1 2 3 23 23 H 1.09000 * 109.47043 * 150.02151 * 1 2 3 24 24 H 1.08004 * 125.04127 * 0.02562 * 3 2 1 25 25 H 1.07998 * 126.56870 * 179.97438 * 4 3 2 26 26 H 1.08006 * 120.97958 * 0.02562 * 6 5 4 27 27 H 1.08997 * 109.46921 * 30.27061 * 8 7 6 28 28 H 1.09005 * 109.47270 * 150.26890 * 8 7 6 29 29 H 1.08997 * 109.47242 * 299.99857 * 9 8 7 30 30 H 1.09005 * 109.47121 * 59.99791 * 9 8 7 31 31 H 0.96993 * 120.00257 * 180.02562 * 13 12 10 32 32 H 1.08002 * 119.21285 * 179.70965 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2501 1.1218 0.0000 4 6 3.5462 0.7727 0.0006 5 6 3.5920 -0.6904 0.0003 6 6 4.6215 -1.6345 0.0002 7 6 4.2760 -2.9726 0.0060 8 6 5.3457 -4.0341 0.0129 9 6 5.7150 -4.3954 -1.4271 10 6 6.7852 -5.4564 -1.4202 11 1 7.1637 -5.8355 -0.4824 12 6 7.2803 -5.9440 -2.6110 13 7 6.8191 -5.4828 -3.7531 14 14 8.6073 -7.2587 -2.6023 15 1 7.9735 -8.6016 -2.6026 16 1 9.4572 -7.1122 -3.8113 17 1 9.4461 -7.1075 -1.3863 18 6 2.9361 -3.3299 -0.0004 19 7 1.9814 -2.4243 -0.0006 20 6 2.2530 -1.1258 -0.0003 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.8812 2.1368 0.0004 25 1 4.3930 1.4430 0.0003 26 1 5.6571 -1.3278 0.0007 27 1 6.2278 -3.6575 0.5307 28 1 4.9741 -4.9211 0.5262 29 1 4.8329 -4.7719 -1.9449 30 1 6.0866 -3.5084 -1.9404 31 1 7.1671 -5.8261 -4.5908 32 1 2.6697 -4.3765 -0.0006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:27 Heat of formation + Delta-G solvation = 40.689975 kcal Electronic energy + Delta-G solvation = -14915.061236 eV Core-core repulsion = 12453.994915 eV Total energy + Delta-G solvation = -2461.066321 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.43302 -39.20325 -35.97328 -34.45309 -33.72652 -31.15983 -30.00345 -27.74077 -26.34967 -24.46572 -23.59500 -21.67943 -21.16131 -18.52219 -18.41546 -17.58585 -16.57499 -16.50528 -16.40561 -15.23887 -14.72833 -14.48433 -14.31021 -14.18044 -13.99470 -13.80839 -13.46116 -13.12124 -12.91569 -12.80732 -12.46168 -12.36530 -11.78887 -11.70311 -11.23408 -10.96294 -10.54114 -10.30855 -9.18170 -8.81512 -8.16886 -6.29162 0.07645 0.43641 1.42758 1.44308 1.55514 1.69911 1.80440 2.43553 2.92427 3.16071 3.43958 3.73221 3.92391 4.06206 4.17305 4.34913 4.39645 4.46010 4.71567 4.72151 4.76940 4.90782 4.93215 4.96261 5.17537 5.41879 5.51811 5.55351 5.64759 5.79946 5.86773 6.13127 6.25127 6.28111 6.88258 7.03403 7.40486 8.94718 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054845 B = 0.004897 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.409457 B = 5716.702914 C = 5834.023219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.077 3.923 4 C -0.220 4.220 5 C -0.170 4.170 6 C -0.047 4.047 7 C -0.154 4.154 8 C -0.052 4.052 9 C 0.036 3.964 10 C -0.541 4.541 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.125 3.875 19 N -0.514 5.514 20 C 0.242 3.758 21 H 0.079 0.921 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.226 0.774 25 H 0.170 0.830 26 H 0.139 0.861 27 H 0.067 0.933 28 H 0.071 0.929 29 H -0.011 1.011 30 H -0.013 1.013 31 H 0.263 0.737 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 13.751 8.844 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.170 5.170 3 C -0.047 4.047 4 C -0.245 4.245 5 C -0.177 4.177 6 C -0.073 4.073 7 C -0.158 4.158 8 C -0.090 4.090 9 C -0.001 4.001 10 C -0.579 4.579 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.184 1.184 18 C -0.040 4.040 19 N -0.227 5.227 20 C 0.010 3.990 21 H 0.098 0.902 22 H 0.135 0.865 23 H 0.088 0.912 24 H 0.242 0.758 25 H 0.188 0.812 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.007 0.993 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.796 13.573 8.673 19.965 hybrid contribution 1.495 -0.709 -0.516 1.733 sum -10.301 12.864 8.157 18.389 Atomic orbital electron populations 1.22166 0.74792 1.05263 1.04037 1.43992 1.07518 1.02624 1.62882 1.22608 0.89453 0.91889 1.00769 1.21976 0.98055 0.90978 1.13476 1.20315 0.93139 0.96597 1.07657 1.21040 0.99297 0.91250 0.95722 1.20909 0.96320 0.95507 1.03028 1.20397 0.95089 0.95373 0.98110 1.18938 0.94725 0.94680 0.91787 1.21724 1.21416 1.21850 0.92915 0.91561 1.26011 0.99420 0.99316 0.95144 1.70125 1.44779 1.44727 0.98044 0.85419 0.78657 0.78886 0.77907 1.19765 1.20976 1.18439 1.22535 0.87660 0.98237 0.95561 1.66431 1.38538 0.99751 1.17955 1.18781 0.89186 0.87718 1.03346 0.90245 0.86467 0.91196 0.75800 0.81213 0.84333 0.91440 0.90995 0.99306 0.99489 0.92865 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 11.07 127.77 1.41 2.67 16 2 N -0.48 -11.94 3.17 -545.14 -1.73 -13.67 16 3 C 0.08 1.48 11.29 82.98 0.94 2.42 16 4 C -0.22 -5.44 11.09 23.48 0.26 -5.18 16 5 C -0.17 -5.81 6.39 -20.18 -0.13 -5.94 16 6 C -0.05 -1.73 9.90 22.61 0.22 -1.50 16 7 C -0.15 -6.10 5.15 -19.77 -0.10 -6.20 16 8 C -0.05 -2.20 5.30 29.85 0.16 -2.04 16 9 C 0.04 1.95 4.95 29.85 0.15 2.09 16 10 C -0.54 -31.06 9.11 25.60 0.23 -30.83 16 11 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 12 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 13 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 14 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 C 0.13 4.77 10.82 84.83 0.92 5.69 16 19 N -0.51 -19.28 10.39 -192.73 -2.00 -21.28 16 20 C 0.24 8.32 7.90 133.93 1.06 9.38 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.12 0.99 8.13 -2.39 -0.02 0.97 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.23 1.73 8.06 -2.91 -0.02 1.70 16 25 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.07 2.73 8.09 -2.39 -0.02 2.71 16 28 H 0.07 2.86 8.09 -2.38 -0.02 2.84 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 32 H 0.17 5.76 8.06 -2.91 -0.02 5.74 16 Total: -1.00 -74.01 281.30 5.26 -68.75 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.10 Total: 6.69 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 5.58 Total: -29.08 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -3.45 Total: -92.98 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.01 5.26 -68.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.438 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds