Wall clock time and date at job start Sun Mar 29 2020 21:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33984 * 126.04827 * 2 1 4 4 H 0.97000 * 125.02153 * 0.03939 * 3 2 1 5 5 N 1.39965 * 109.95649 * 180.02562 * 3 2 1 6 6 C 1.32059 * 108.95634 * 0.02562 * 5 3 2 7 7 C 1.41157 * 134.67637 * 180.24803 * 6 5 3 8 8 C 1.35637 * 119.59157 * 180.19208 * 7 6 5 9 9 C 1.50697 * 119.08794 * 179.77455 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72964 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.39682 * 121.82183 * 359.50339 * 8 7 6 20 20 C 1.35662 * 121.72073 * 0.27382 * 19 8 7 21 21 C 1.38249 * 126.04606 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47017 * 269.99867 * 1 2 3 23 23 H 1.09001 * 109.46951 * 29.99980 * 1 2 3 24 24 H 1.09003 * 109.46976 * 149.99542 * 1 2 3 25 25 H 1.07991 * 120.20512 * 359.95041 * 7 6 5 26 26 H 1.09004 * 109.46801 * 149.73003 * 9 8 7 27 27 H 1.09000 * 109.47461 * 29.73535 * 9 8 7 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.13993 * 180.25560 * 19 8 7 32 32 H 1.07996 * 120.22571 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0833 0.0000 4 1 1.9808 2.0008 0.0005 5 7 3.6403 0.6953 -0.0006 6 6 3.7063 -0.6236 -0.0015 7 6 4.7584 -1.5647 0.0019 8 6 4.4713 -2.8903 -0.0044 9 6 5.6033 -3.8850 -0.0058 10 6 5.9856 -4.2207 -1.4487 11 6 7.1180 -5.2151 -1.4501 12 1 7.5242 -5.5722 -0.5152 13 6 7.6314 -5.6736 -2.6448 14 7 7.1365 -5.2390 -3.7831 15 14 9.0300 -6.9119 -2.6464 16 1 8.5984 -8.1470 -1.9438 17 1 9.3978 -7.2413 -4.0469 18 1 10.2060 -6.3314 -1.9497 19 6 3.1554 -3.3589 -0.0040 20 6 2.0963 -2.5112 -0.0028 21 6 2.3205 -1.1178 -0.0005 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 5.7855 -1.2313 0.0056 26 1 5.2890 -4.7938 0.5076 27 1 6.4640 -3.4568 0.5078 28 1 6.2998 -3.3120 -1.9622 29 1 5.1249 -4.6491 -1.9624 30 1 7.4980 -5.5613 -4.6236 31 1 2.9765 -4.4240 -0.0050 32 1 1.0888 -2.8999 -0.0021 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:17 Heat of formation + Delta-G solvation = 68.122379 kcal Electronic energy + Delta-G solvation = -14857.524840 eV Core-core repulsion = 12397.648077 eV Total energy + Delta-G solvation = -2459.876763 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10218 -37.44205 -33.66077 -32.96072 -31.80680 -30.01062 -28.93336 -26.74030 -25.35198 -22.97092 -21.57446 -20.06071 -19.71774 -17.24334 -16.55490 -16.18948 -15.08497 -14.82145 -14.42109 -14.30783 -13.62602 -13.11778 -13.08895 -12.55876 -12.38150 -12.21397 -11.65769 -11.48786 -11.33679 -10.85887 -10.69918 -10.53466 -10.03051 -9.91642 -9.72975 -9.51325 -9.05447 -8.29344 -8.12948 -7.25139 -5.94274 -3.97210 0.88721 2.16980 2.67839 2.79880 3.37441 3.41657 3.44157 4.23201 4.44116 4.50895 4.61450 4.80764 5.19183 5.24692 5.41177 5.52459 5.57855 5.67363 5.73450 5.98231 6.11058 6.32452 6.60042 6.72874 6.77921 6.87374 7.04805 7.20361 7.25093 7.32923 7.74383 7.84183 7.90084 8.06300 8.46300 9.09755 9.66404 11.16752 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053738 B = 0.004869 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.921725 B = 5749.120506 C = 5871.113137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.097 3.903 3 N -0.435 5.435 4 H 0.436 0.564 5 N -0.317 5.317 6 C 0.118 3.882 7 C -0.123 4.123 8 C -0.015 4.015 9 C -0.082 4.082 10 C 0.030 3.970 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.133 4.133 20 C -0.058 4.058 21 C -0.206 4.206 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.123 0.877 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 9.518 8.051 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 N -0.136 5.136 4 H 0.280 0.720 5 N -0.145 5.145 6 C -0.035 4.035 7 C -0.144 4.144 8 C -0.019 4.019 9 C -0.120 4.120 10 C -0.007 4.007 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.152 4.152 20 C -0.078 4.078 21 C -0.216 4.216 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.144 0.856 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.543 10.617 7.854 18.916 hybrid contribution 0.166 -0.823 -0.228 0.870 sum -13.377 9.794 7.626 18.249 Atomic orbital electron populations 1.20474 0.86770 1.04153 1.03475 1.21109 0.93993 0.87481 1.01460 1.46194 1.04911 1.08201 1.54278 0.72044 1.77664 0.92402 1.12496 1.31971 1.20971 0.94294 0.90647 0.97555 1.19723 0.96659 0.90476 1.07508 1.19876 0.95426 0.94071 0.92533 1.20925 0.93727 0.95465 1.01863 1.19074 0.96294 0.96696 0.88666 1.21231 1.17528 1.24968 0.92304 0.92606 1.25020 0.97024 0.96678 0.95662 1.69970 1.42158 1.43989 0.97260 0.86661 0.82687 0.81769 0.76888 1.20240 1.21348 1.20242 1.20597 0.91871 0.99797 1.02974 1.20129 0.98600 0.89951 0.99165 1.19338 0.92279 0.93930 1.16014 0.89936 0.90952 0.89279 0.85562 0.91950 0.92015 0.96319 0.96329 0.92976 0.85890 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.44 36.01 0.38 -0.25 16 2 C 0.10 1.17 7.27 -81.65 -0.59 0.58 16 3 N -0.43 -5.38 7.18 33.85 0.24 -5.14 16 4 H 0.44 3.52 8.96 -182.70 -1.64 1.89 16 5 N -0.32 -5.44 12.70 33.25 0.42 -5.02 16 6 C 0.12 2.17 7.49 -83.06 -0.62 1.55 16 7 C -0.12 -2.36 9.65 -39.40 -0.38 -2.74 16 8 C -0.01 -0.28 5.09 -105.01 -0.53 -0.81 16 9 C -0.08 -1.74 5.23 -27.89 -0.15 -1.88 16 10 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 11 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 C -0.13 -2.26 9.51 -39.96 -0.38 -2.64 16 20 C -0.06 -0.87 10.09 -39.41 -0.40 -1.27 16 21 C -0.21 -3.24 6.26 -105.19 -0.66 -3.90 16 22 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 26 H 0.06 1.24 8.07 -51.93 -0.42 0.83 16 27 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -33.90 280.62 -8.67 -42.58 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.40 Total: -2.50 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -3.89 Total: -24.36 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 1.40 Total: -36.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.90 -8.67 -42.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.699 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds