Wall clock time and date at job start Sun Mar 29 2020 21:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33984 * 126.04827 * 2 1 4 4 H 0.97000 * 125.02153 * 0.03939 * 3 2 1 5 5 N 1.39965 * 109.95649 * 180.02562 * 3 2 1 6 6 C 1.32059 * 108.95634 * 0.02562 * 5 3 2 7 7 C 1.41157 * 134.67637 * 180.24803 * 6 5 3 8 8 C 1.35637 * 119.59157 * 180.19208 * 7 6 5 9 9 C 1.50697 * 119.08794 * 179.77455 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72964 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.39682 * 121.82183 * 359.50339 * 8 7 6 20 20 C 1.35662 * 121.72073 * 0.27382 * 19 8 7 21 21 C 1.38249 * 126.04606 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47017 * 269.99867 * 1 2 3 23 23 H 1.09001 * 109.46951 * 29.99980 * 1 2 3 24 24 H 1.09003 * 109.46976 * 149.99542 * 1 2 3 25 25 H 1.07991 * 120.20512 * 359.95041 * 7 6 5 26 26 H 1.09004 * 109.46801 * 149.73003 * 9 8 7 27 27 H 1.09000 * 109.47461 * 29.73535 * 9 8 7 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 29 29 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.13993 * 180.25560 * 19 8 7 32 32 H 1.07996 * 120.22571 * 180.02562 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0833 0.0000 4 1 1.9808 2.0008 0.0005 5 7 3.6403 0.6953 -0.0006 6 6 3.7063 -0.6236 -0.0015 7 6 4.7584 -1.5647 0.0019 8 6 4.4713 -2.8903 -0.0044 9 6 5.6033 -3.8850 -0.0058 10 6 5.9856 -4.2207 -1.4487 11 6 7.1180 -5.2151 -1.4501 12 1 7.5242 -5.5722 -0.5152 13 6 7.6314 -5.6736 -2.6448 14 7 7.1365 -5.2390 -3.7831 15 14 9.0300 -6.9119 -2.6464 16 1 8.5984 -8.1470 -1.9438 17 1 9.3978 -7.2413 -4.0469 18 1 10.2060 -6.3314 -1.9497 19 6 3.1554 -3.3589 -0.0040 20 6 2.0963 -2.5112 -0.0028 21 6 2.3205 -1.1178 -0.0005 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 5.7855 -1.2313 0.0056 26 1 5.2890 -4.7938 0.5076 27 1 6.4640 -3.4568 0.5078 28 1 6.2998 -3.3120 -1.9622 29 1 5.1249 -4.6491 -1.9624 30 1 7.4980 -5.5613 -4.6236 31 1 2.9765 -4.4240 -0.0050 32 1 1.0888 -2.8999 -0.0021 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:16 Heat of formation + Delta-G solvation = 46.412579 kcal Electronic energy + Delta-G solvation = -14858.466247 eV Core-core repulsion = 12397.648077 eV Total energy + Delta-G solvation = -2460.818171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25654 -38.79727 -35.61228 -34.02276 -33.58364 -31.07799 -30.60567 -27.74280 -27.16889 -24.50187 -23.13170 -21.64983 -20.88682 -18.60240 -18.22352 -17.67289 -16.51626 -16.13528 -16.06231 -15.70586 -14.80628 -14.52518 -14.22399 -13.99403 -13.75656 -13.51542 -13.19224 -12.87336 -12.79454 -12.62254 -12.35747 -12.24160 -11.73735 -11.50402 -11.24848 -11.09883 -11.04796 -10.52881 -9.48363 -8.49031 -8.16927 -6.29330 -0.28128 0.87060 1.42021 1.45912 1.47307 1.53745 1.84399 2.43511 2.91301 3.15694 3.34209 3.60728 4.03920 4.10609 4.22817 4.39089 4.65740 4.67632 4.76764 4.82877 4.87616 4.89748 5.13341 5.13582 5.33513 5.49684 5.52529 5.56789 5.65413 5.86490 5.95553 6.02549 6.25291 6.31724 6.64433 6.87342 7.39886 8.94643 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053738 B = 0.004869 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.921725 B = 5749.120506 C = 5871.113137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.139 3.861 3 N -0.419 5.419 4 H 0.456 0.544 5 N -0.360 5.360 6 C 0.092 3.908 7 C -0.151 4.151 8 C -0.022 4.022 9 C -0.069 4.069 10 C 0.038 3.962 11 C -0.544 4.544 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.172 4.172 20 C -0.026 4.026 21 C -0.243 4.243 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.059 0.941 28 H -0.017 1.017 29 H -0.005 1.005 30 H 0.263 0.737 31 H 0.133 0.867 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.739 9.623 8.888 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.001 4.001 3 N -0.121 5.121 4 H 0.303 0.697 5 N -0.189 5.189 6 C -0.060 4.060 7 C -0.173 4.173 8 C -0.026 4.026 9 C -0.106 4.106 10 C 0.001 3.999 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.192 4.192 20 C -0.046 4.046 21 C -0.253 4.253 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.001 0.999 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.993 10.752 8.711 21.148 hybrid contribution 0.737 -0.671 -0.489 1.110 sum -15.255 10.081 8.222 20.049 Atomic orbital electron populations 1.20795 0.82085 1.06306 1.05700 1.21956 0.96231 0.85765 0.96192 1.46267 1.03698 1.09668 1.52487 0.69652 1.77582 0.95089 1.12117 1.34152 1.21020 0.95466 0.91248 0.98263 1.19668 0.96620 0.91271 1.09725 1.19757 0.95997 0.93431 0.93414 1.20671 0.94838 0.96763 0.98369 1.18888 0.94963 0.94572 0.91461 1.21693 1.18208 1.25404 0.92927 0.91708 1.26020 0.99927 0.98805 0.95105 1.70123 1.43872 1.45507 0.98024 0.85461 0.78990 0.79174 0.77171 1.18763 1.20910 1.19275 1.20678 0.91379 1.00803 1.06291 1.20550 0.99897 0.89345 0.94767 1.19768 0.91660 0.95444 1.18419 0.87340 0.88015 0.87975 0.87299 0.90723 0.92182 0.99859 0.98676 0.92806 0.84941 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.44 71.24 0.74 0.02 16 2 C 0.14 2.85 7.27 42.23 0.31 3.16 16 3 N -0.42 -9.39 7.18 -46.81 -0.34 -9.72 16 4 H 0.46 5.97 8.96 -213.41 -1.91 4.06 16 5 N -0.36 -12.44 12.70 -48.71 -0.62 -13.06 16 6 C 0.09 3.46 7.49 42.16 0.32 3.78 16 7 C -0.15 -6.26 9.65 22.38 0.22 -6.04 16 8 C -0.02 -0.88 5.09 -20.12 -0.10 -0.98 16 9 C -0.07 -3.07 5.23 29.85 0.16 -2.92 16 10 C 0.04 2.14 4.96 29.85 0.15 2.29 16 11 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 12 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 14 N -0.94 -58.83 13.29 21.45 0.28 -58.55 16 15 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.17 -5.86 9.51 22.02 0.21 -5.65 16 20 C -0.03 -0.72 10.09 22.38 0.23 -0.49 16 21 C -0.24 -7.25 6.26 -20.23 -0.13 -7.37 16 22 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.11 4.61 8.06 -2.92 -0.02 4.59 16 26 H 0.07 3.07 8.07 -2.38 -0.02 3.05 16 27 H 0.06 2.62 8.06 -2.39 -0.02 2.60 16 28 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 31 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 32 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -77.81 280.62 3.35 -74.45 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -0.79 Total: 5.22 kcal Atomic # 6 Polarization: -48.33 SS G_CDS: 2.79 Total: -45.54 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -0.67 Total: -81.33 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.81 3.35 -74.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.866 kcal (2) G-P(sol) polarization free energy of solvation -77.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds