Wall clock time and date at job start Sun Mar 29 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35637 * 119.09527 * 2 1 4 4 C 1.41148 * 119.59835 * 179.73829 * 3 2 1 5 5 N 1.32058 * 134.68039 * 180.18044 * 4 3 2 6 6 N 1.39950 * 108.96396 * 180.31707 * 5 4 3 7 7 H 0.96995 * 125.02524 * 179.97438 * 6 5 4 8 8 C 1.33990 * 109.95375 * 359.97438 * 6 5 4 9 9 C 1.38247 * 107.90950 * 359.97438 * 8 6 5 10 10 C 1.41126 * 134.82371 * 180.02562 * 9 8 6 11 11 C 1.35654 * 119.53781 * 180.02562 * 10 9 8 12 12 C 1.50703 * 119.13590 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46571 * 265.01640 * 12 11 10 14 14 C 1.50703 * 109.46711 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99732 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99610 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47287 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.46828 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47378 * 299.99695 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72903 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.73003 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72984 * 1 2 3 25 25 H 1.08001 * 120.19775 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.04743 * 179.97438 * 8 6 5 27 27 H 1.08005 * 120.23325 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46937 * 25.01343 * 12 11 10 29 29 H 1.09000 * 109.47070 * 145.02041 * 12 11 10 30 30 H 1.09001 * 109.47247 * 299.99512 * 13 12 11 31 31 H 1.08994 * 109.47402 * 60.00106 * 13 12 11 32 32 H 0.96996 * 120.00030 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1666 1.1852 0.0000 4 6 3.5780 1.1976 0.0056 5 7 4.4983 2.1447 0.0101 6 7 5.7644 1.5486 0.0073 7 1 6.6065 2.0301 0.0092 8 6 5.6416 0.2143 0.0015 9 6 4.2927 -0.0884 0.0010 10 6 3.5413 -1.2830 -0.0034 11 6 2.1862 -1.2206 -0.0029 12 6 1.3927 -2.5018 -0.0082 13 6 1.0175 -2.8633 -1.4467 14 6 0.2235 -4.1441 -1.4519 15 1 0.0083 -4.6500 -0.5223 16 6 -0.2275 -4.6708 -2.6438 17 7 0.0348 -4.0552 -3.7759 18 14 -1.2111 -6.2589 -2.6503 19 1 -2.4471 -6.0789 -1.8471 20 1 -1.5754 -6.6097 -4.0465 21 1 -0.3933 -7.3502 -2.0625 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5097 25 1 1.6151 2.1138 0.0004 26 1 6.4529 -0.4986 -0.0022 27 1 4.0415 -2.2402 -0.0070 28 1 1.9932 -3.3029 0.4229 29 1 0.4856 -2.3698 0.5817 30 1 0.4170 -2.0622 -1.8778 31 1 1.9245 -2.9952 -2.0366 32 1 -0.2821 -4.4259 -4.6143 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:19 Heat of formation + Delta-G solvation = 70.921942 kcal Electronic energy + Delta-G solvation = -15105.112688 eV Core-core repulsion = 12645.357324 eV Total energy + Delta-G solvation = -2459.755365 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00265 -37.88793 -33.72686 -32.22478 -31.91153 -30.54953 -28.04730 -27.01189 -24.87921 -22.61719 -21.21790 -20.43947 -19.86006 -17.90761 -16.40571 -15.79796 -14.78454 -14.70280 -14.63384 -14.41443 -13.56049 -13.14390 -12.61391 -12.55351 -12.29785 -11.73982 -11.40932 -11.21688 -11.15063 -10.85711 -10.61587 -10.56335 -10.09808 -9.97042 -9.73730 -9.39868 -9.03245 -8.30794 -8.16378 -7.16771 -5.96041 -3.99059 0.90193 2.16781 2.72036 2.84965 3.35405 3.40108 3.42274 4.18563 4.48673 4.53141 4.80923 5.32295 5.39233 5.41754 5.52153 5.62543 5.91877 5.97090 6.08886 6.16689 6.30813 6.46456 6.67799 6.73172 6.76997 6.93471 7.05525 7.22065 7.27561 7.33806 7.74295 7.81300 7.88406 8.05478 8.45166 9.08347 9.64789 11.14732 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.005611 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.959829 B = 4989.396370 C = 5277.877838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.018 4.018 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.320 5.320 6 N -0.436 5.436 7 H 0.438 0.562 8 C 0.067 3.933 9 C -0.196 4.196 10 C -0.061 4.061 11 C -0.088 4.088 12 C -0.077 4.077 13 C 0.029 3.971 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.184 0.816 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 8.413 8.002 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 C -0.148 4.148 4 C -0.047 4.047 5 N -0.149 5.149 6 N -0.137 5.137 7 H 0.282 0.718 8 C -0.089 4.089 9 C -0.205 4.205 10 C -0.081 4.081 11 C -0.089 4.089 12 C -0.115 4.115 13 C -0.008 4.008 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.087 0.913 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.201 0.799 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.090 9.702 7.810 15.419 hybrid contribution -0.013 -1.488 -0.221 1.504 sum 9.077 8.214 7.589 14.403 Atomic orbital electron populations 1.21061 0.90949 1.04168 1.02283 1.19432 0.96326 0.91930 0.94567 1.19613 0.88864 0.97955 1.08372 1.20902 0.94549 0.90621 0.98602 1.77565 0.87145 1.18568 1.31622 1.46177 1.08720 1.04911 1.53901 0.71843 1.22580 0.97811 0.86231 1.02255 1.19683 0.91590 0.95135 1.14120 1.20076 0.92981 0.95319 0.99744 1.19648 0.93534 0.95639 1.00090 1.20827 0.97716 0.91351 1.01579 1.19103 0.96573 0.96136 0.89020 1.21242 1.33965 1.08129 0.92686 0.92681 1.25012 0.96320 0.97300 0.95698 1.69959 1.46252 1.39464 0.97683 0.86690 0.80602 0.83975 0.76905 1.20238 1.21367 1.20289 0.91260 0.88964 0.91911 0.85915 0.79947 0.85962 0.92493 0.92033 0.96151 0.96545 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.11 36.01 0.33 -1.70 16 2 C -0.02 -0.32 5.84 -105.01 -0.61 -0.93 16 3 C -0.13 -2.15 9.65 -39.41 -0.38 -2.53 16 4 C 0.11 1.84 7.49 -83.06 -0.62 1.22 16 5 N -0.32 -5.13 12.70 33.25 0.42 -4.70 16 6 N -0.44 -5.08 7.18 30.84 0.22 -4.86 16 7 H 0.44 3.15 8.96 -182.72 -1.64 1.51 16 8 C 0.07 0.80 12.07 -16.61 -0.20 0.60 16 9 C -0.20 -3.15 6.33 -105.19 -0.67 -3.82 16 10 C -0.06 -1.05 9.65 -39.41 -0.38 -1.43 16 11 C -0.09 -1.64 5.09 -105.01 -0.53 -2.17 16 12 C -0.08 -1.58 4.54 -27.88 -0.13 -1.71 16 13 C 0.03 0.73 4.73 -27.88 -0.13 0.60 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.09 1.68 5.21 -51.93 -0.27 1.40 16 24 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 25 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 26 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.12 1.90 8.02 -52.48 -0.42 1.48 16 28 H 0.06 1.12 8.00 -51.93 -0.42 0.71 16 29 H 0.06 1.20 6.88 -51.93 -0.36 0.85 16 30 H 0.02 0.55 6.84 -51.93 -0.36 0.19 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 273.53 15.07 4.12 4.12 Total: -1.00 -33.04 273.53 -8.37 -41.40 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.11 Total: -1.17 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.74 Total: -25.14 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 1.38 Total: -35.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.04 -8.37 -41.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.327 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds