Wall clock time and date at job start Sun Mar 29 2020 21:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35637 * 119.09527 * 2 1 4 4 C 1.41148 * 119.59835 * 179.73829 * 3 2 1 5 5 N 1.32058 * 134.68039 * 180.18044 * 4 3 2 6 6 N 1.39950 * 108.96396 * 180.31707 * 5 4 3 7 7 H 0.96995 * 125.02524 * 179.97438 * 6 5 4 8 8 C 1.33990 * 109.95375 * 359.97438 * 6 5 4 9 9 C 1.38247 * 107.90950 * 359.97438 * 8 6 5 10 10 C 1.41126 * 134.82371 * 180.02562 * 9 8 6 11 11 C 1.35654 * 119.53781 * 180.02562 * 10 9 8 12 12 C 1.50703 * 119.13590 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46571 * 265.01640 * 12 11 10 14 14 C 1.50703 * 109.46711 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99732 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99610 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47287 * 60.00002 * 18 16 14 20 20 H 1.48495 * 109.46828 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47378 * 299.99695 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72903 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.73003 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72984 * 1 2 3 25 25 H 1.08001 * 120.19775 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.04743 * 179.97438 * 8 6 5 27 27 H 1.08005 * 120.23325 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46937 * 25.01343 * 12 11 10 29 29 H 1.09000 * 109.47070 * 145.02041 * 12 11 10 30 30 H 1.09001 * 109.47247 * 299.99512 * 13 12 11 31 31 H 1.08994 * 109.47402 * 60.00106 * 13 12 11 32 32 H 0.96996 * 120.00030 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1666 1.1852 0.0000 4 6 3.5780 1.1976 0.0056 5 7 4.4983 2.1447 0.0101 6 7 5.7644 1.5486 0.0073 7 1 6.6065 2.0301 0.0092 8 6 5.6416 0.2143 0.0015 9 6 4.2927 -0.0884 0.0010 10 6 3.5413 -1.2830 -0.0034 11 6 2.1862 -1.2206 -0.0029 12 6 1.3927 -2.5018 -0.0082 13 6 1.0175 -2.8633 -1.4467 14 6 0.2235 -4.1441 -1.4519 15 1 0.0083 -4.6500 -0.5223 16 6 -0.2275 -4.6708 -2.6438 17 7 0.0348 -4.0552 -3.7759 18 14 -1.2111 -6.2589 -2.6503 19 1 -2.4471 -6.0789 -1.8471 20 1 -1.5754 -6.6097 -4.0465 21 1 -0.3933 -7.3502 -2.0625 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8876 -0.5180 24 1 -0.3633 0.8924 -0.5097 25 1 1.6151 2.1138 0.0004 26 1 6.4529 -0.4986 -0.0022 27 1 4.0415 -2.2402 -0.0070 28 1 1.9932 -3.3029 0.4229 29 1 0.4856 -2.3698 0.5817 30 1 0.4170 -2.0622 -1.8778 31 1 1.9245 -2.9952 -2.0366 32 1 -0.2821 -4.4259 -4.6143 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:19 Heat of formation + Delta-G solvation = 50.342548 kcal Electronic energy + Delta-G solvation = -15106.005078 eV Core-core repulsion = 12645.357324 eV Total energy + Delta-G solvation = -2460.647754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13911 -39.19017 -35.59779 -33.80969 -33.20600 -32.00242 -29.56311 -28.26684 -26.63621 -24.10556 -22.79098 -21.60181 -21.28188 -18.96618 -18.48198 -17.09894 -16.49061 -16.11481 -15.92460 -15.79383 -14.82400 -14.57484 -14.30999 -14.03794 -13.74073 -13.46390 -12.98081 -12.78746 -12.67337 -12.38758 -12.28233 -12.08306 -11.62785 -11.50240 -11.26615 -11.08902 -10.95789 -10.48110 -9.39681 -8.42940 -8.12271 -6.24461 -0.25137 0.89481 1.44102 1.46972 1.53780 1.54956 1.93551 2.45852 2.89888 3.19739 3.37121 3.80903 4.11559 4.20824 4.31615 4.50955 4.64295 4.66913 4.81304 4.84650 4.88775 5.02090 5.16975 5.25832 5.39086 5.51496 5.59123 5.61891 5.76043 5.93675 6.03282 6.03924 6.31452 6.36321 6.66432 6.93363 7.44566 8.98042 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.005611 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.959829 B = 4989.396370 C = 5277.877838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.138 4.138 4 C 0.085 3.915 5 N -0.351 5.351 6 N -0.415 5.415 7 H 0.460 0.540 8 C 0.111 3.889 9 C -0.238 4.238 10 C -0.048 4.048 11 C -0.126 4.126 12 C -0.059 4.059 13 C 0.038 3.962 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.266 1.266 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.135 0.865 26 H 0.238 0.762 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.065 0.935 30 H -0.005 1.005 31 H -0.015 1.015 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 8.075 9.011 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.035 4.035 3 C -0.159 4.159 4 C -0.067 4.067 5 N -0.181 5.181 6 N -0.117 5.117 7 H 0.308 0.692 8 C -0.047 4.047 9 C -0.247 4.247 10 C -0.068 4.068 11 C -0.127 4.127 12 C -0.096 4.096 13 C 0.001 3.999 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.191 1.191 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.152 0.848 26 H 0.254 0.746 27 H 0.153 0.847 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.013 0.987 31 H 0.003 0.997 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.653 9.399 8.840 16.733 hybrid contribution -0.279 -1.308 -0.534 1.440 sum 10.374 8.091 8.306 15.559 Atomic orbital electron populations 1.21004 0.90369 1.03299 1.03253 1.19534 0.96931 0.91939 0.95068 1.19758 0.89444 0.98111 1.08552 1.21118 0.94994 0.91617 0.99007 1.77513 0.88349 1.19038 1.33191 1.46269 1.08661 1.05234 1.51552 0.69226 1.23361 0.97463 0.86696 0.97187 1.19968 0.93502 0.94308 1.16952 1.20279 0.92678 0.96509 0.97347 1.19534 0.94286 0.95026 1.03895 1.20511 0.98351 0.92765 0.98001 1.18932 0.94400 0.94756 0.91855 1.21707 1.33997 1.08960 0.93114 0.91906 1.25954 0.97452 1.01052 0.95241 1.70109 1.47633 1.41405 0.98382 0.85544 0.79243 0.79472 0.77040 1.19112 1.21175 1.19122 0.89325 0.91922 0.90531 0.84755 0.74570 0.84697 0.92033 0.91673 0.98673 0.99666 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.11 71.24 0.65 -3.34 16 2 C -0.03 -1.09 5.84 -20.12 -0.12 -1.21 16 3 C -0.14 -4.69 9.65 22.38 0.22 -4.47 16 4 C 0.08 2.87 7.49 42.16 0.32 3.19 16 5 N -0.35 -10.66 12.70 -48.71 -0.62 -11.28 16 6 N -0.41 -8.20 7.18 -56.34 -0.40 -8.61 16 7 H 0.46 4.71 8.96 -213.42 -1.91 2.80 16 8 C 0.11 2.18 12.07 84.37 1.02 3.20 16 9 C -0.24 -7.22 6.33 -20.23 -0.13 -7.35 16 10 C -0.05 -1.62 9.65 22.38 0.22 -1.40 16 11 C -0.13 -4.79 5.09 -20.11 -0.10 -4.90 16 12 C -0.06 -2.47 4.54 29.85 0.14 -2.34 16 13 C 0.04 2.00 4.73 29.85 0.14 2.14 16 14 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 15 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.06 2.40 5.21 -2.39 -0.01 2.39 16 24 H 0.08 2.19 8.06 -2.38 -0.02 2.17 16 25 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.24 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.14 4.03 8.02 -2.91 -0.02 4.01 16 28 H 0.06 2.45 8.00 -2.39 -0.02 2.43 16 29 H 0.06 2.62 6.88 -2.39 -0.02 2.60 16 30 H -0.01 -0.29 6.84 -2.39 -0.02 -0.31 16 31 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.65 273.53 3.55 -70.10 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -0.78 Total: 7.14 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.04 Total: -46.33 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -0.74 Total: -77.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.65 3.55 -70.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.444 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds