Wall clock time and date at job start Sun Mar 29 2020 21:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.33989 * 125.01709 * 2 1 4 4 C 1.38244 * 107.90194 * 180.02562 * 3 2 1 5 5 C 1.47127 * 106.42126 * 359.97438 * 4 3 2 6 6 C 1.41155 * 118.56296 * 179.97438 * 5 4 3 7 7 C 1.35632 * 119.59329 * 0.02562 * 6 5 4 8 8 C 1.39686 * 121.81825 * 359.80968 * 7 6 5 9 9 C 1.35651 * 121.72516 * 0.42544 * 8 7 6 10 10 C 1.50697 * 120.23373 * 179.82595 * 9 8 7 11 11 C 1.52997 * 109.47466 * 264.72298 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 N 1.32060 * 106.75980 * 0.02562 * 5 4 3 21 21 H 1.08995 * 109.47317 * 269.95707 * 1 2 3 22 22 H 1.09005 * 109.46987 * 29.95986 * 1 2 3 23 23 H 1.08998 * 109.46799 * 149.95363 * 1 2 3 24 24 H 1.07999 * 126.04843 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.20321 * 180.02562 * 6 5 4 26 26 H 1.08002 * 119.09031 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.13920 * 180.25119 * 8 7 6 28 28 H 1.09002 * 109.47120 * 144.72050 * 10 9 8 29 29 H 1.08998 * 109.46862 * 24.72853 * 10 9 8 30 30 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2339 1.0973 0.0000 4 6 3.5551 0.6905 -0.0006 5 6 3.5373 -0.7807 -0.0003 6 6 4.7688 -1.4705 -0.0014 7 6 5.9296 -0.7689 -0.0021 8 6 5.9459 0.6278 -0.0057 9 6 4.8005 1.3546 -0.0002 10 6 4.8573 2.8605 -0.0004 11 6 4.7508 3.3752 1.4365 12 6 4.8083 4.8811 1.4362 13 1 4.9101 5.4174 0.5044 14 6 4.7298 5.5741 2.6256 15 7 4.7795 6.8883 2.6253 16 14 4.5531 4.6464 4.2373 17 1 5.9000 4.3480 4.7869 18 1 3.7961 5.4783 5.2068 19 1 3.8228 3.3755 3.9993 20 7 2.2683 -1.1461 -0.0002 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3633 0.8904 -0.5132 23 1 -0.3633 -0.8896 -0.5145 24 1 1.8835 2.1189 0.0004 25 1 4.7866 -2.5503 -0.0016 26 1 6.8671 -1.3050 -0.0024 27 1 6.8952 1.1427 -0.0102 28 1 4.0298 3.2552 -0.5900 29 1 5.8017 3.1883 -0.4348 30 1 5.5783 2.9804 2.0260 31 1 3.8064 3.0473 1.8708 32 1 4.7247 7.3759 3.4621 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:10 Heat of formation + Delta-G solvation = 83.694709 kcal Electronic energy + Delta-G solvation = -15211.568781 eV Core-core repulsion = 12752.367285 eV Total energy + Delta-G solvation = -2459.201496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03965 -37.38067 -34.29000 -32.58167 -32.09322 -30.07479 -28.43558 -27.18271 -25.05002 -22.34977 -21.71848 -20.84858 -19.05957 -17.09365 -16.83100 -16.36846 -15.49971 -15.35900 -14.26954 -14.16495 -13.30781 -13.17097 -12.92205 -12.82333 -12.78108 -12.56864 -11.67302 -11.52823 -11.35846 -11.08882 -10.89624 -10.50949 -10.05678 -9.87158 -9.71425 -9.46688 -9.17972 -8.55325 -8.31140 -7.21402 -6.06289 -4.04442 0.90890 2.15763 2.48116 2.70801 3.30530 3.37964 3.43348 4.18972 4.33842 4.44369 4.78937 4.98669 5.04385 5.23665 5.28104 5.31250 5.40868 5.61364 5.72677 5.82152 6.02237 6.22459 6.40286 6.48698 6.74777 6.80832 6.86652 6.99616 7.09032 7.25505 7.31855 7.45914 7.76903 7.86079 8.51306 8.98609 9.56585 11.06950 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.007576 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.989459 B = 3695.176994 C = 4251.806647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.333 5.333 3 C 0.088 3.912 4 C -0.200 4.200 5 C 0.107 3.893 6 C -0.134 4.134 7 C -0.060 4.060 8 C -0.182 4.182 9 C 0.021 3.979 10 C -0.074 4.074 11 C -0.004 4.004 12 C -0.521 4.521 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.266 1.266 20 N -0.326 5.326 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.188 0.812 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -13.877 -5.472 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.107 5.107 3 C -0.067 4.067 4 C -0.209 4.209 5 C -0.046 4.046 6 C -0.155 4.155 7 C -0.082 4.082 8 C -0.201 4.201 9 C 0.019 3.981 10 C -0.111 4.111 11 C -0.041 4.041 12 C -0.559 4.559 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.190 1.190 20 N -0.154 5.154 21 H 0.099 0.901 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.205 0.795 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.443 -14.753 -5.355 16.966 hybrid contribution 0.340 0.384 1.034 1.154 sum -6.103 -14.369 -4.321 16.198 Atomic orbital electron populations 1.22019 0.73990 1.04860 1.03996 1.48430 1.07309 1.04171 1.50784 1.22793 0.90761 0.93217 0.99940 1.19499 0.92907 0.93163 1.15357 1.20950 0.92247 0.93020 0.98421 1.19677 0.88573 0.98712 1.08580 1.20618 0.97146 0.94277 0.96158 1.20399 0.97949 0.93432 1.08329 1.19549 0.90225 0.96599 0.91771 1.20684 1.02231 0.87775 1.00421 1.19520 0.96599 0.96761 0.91227 1.21150 1.50372 0.89419 0.94943 0.90877 1.24997 0.94585 0.94679 0.99038 1.69912 1.51021 1.06218 1.27067 0.86826 0.78756 0.80274 0.83777 1.20177 1.21425 1.19015 1.77603 1.01030 1.04491 1.32285 0.90076 0.88879 0.88967 0.79528 0.86196 0.86138 0.86087 0.91742 0.91261 0.96749 0.96654 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.38 59.85 0.68 1.49 16 2 N -0.33 -4.80 3.95 -67.61 -0.27 -5.06 16 3 C 0.09 1.37 11.31 -16.61 -0.19 1.18 16 4 C -0.20 -3.58 6.13 -105.19 -0.64 -4.23 16 5 C 0.11 1.89 7.49 -83.06 -0.62 1.26 16 6 C -0.13 -2.08 10.08 -39.41 -0.40 -2.47 16 7 C -0.06 -0.87 9.89 -39.97 -0.40 -1.26 16 8 C -0.18 -2.99 9.53 -39.97 -0.38 -3.37 16 9 C 0.02 0.38 5.15 -104.45 -0.54 -0.15 16 10 C -0.07 -1.46 5.21 -27.89 -0.15 -1.60 16 11 C 0.00 -0.09 4.02 -27.88 -0.11 -0.20 16 12 C -0.52 -14.58 9.66 -34.44 -0.33 -14.92 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 16 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 N -0.33 -5.60 12.54 33.25 0.42 -5.18 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.12 1.83 8.03 -52.49 -0.42 1.41 16 28 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -33.67 277.79 -6.88 -40.55 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.15 Total: -2.43 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -3.17 Total: -22.40 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.92 Total: -37.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.67 -6.88 -40.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.246 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds