Wall clock time and date at job start Sun Mar 29 2020 21:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.33989 * 125.01709 * 2 1 4 4 C 1.38244 * 107.90194 * 180.02562 * 3 2 1 5 5 C 1.47127 * 106.42126 * 359.97438 * 4 3 2 6 6 C 1.41155 * 118.56296 * 179.97438 * 5 4 3 7 7 C 1.35632 * 119.59329 * 0.02562 * 6 5 4 8 8 C 1.39686 * 121.81825 * 359.80968 * 7 6 5 9 9 C 1.35651 * 121.72516 * 0.42544 * 8 7 6 10 10 C 1.50697 * 120.23373 * 179.82595 * 9 8 7 11 11 C 1.52997 * 109.47466 * 264.72298 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 N 1.32060 * 106.75980 * 0.02562 * 5 4 3 21 21 H 1.08995 * 109.47317 * 269.95707 * 1 2 3 22 22 H 1.09005 * 109.46987 * 29.95986 * 1 2 3 23 23 H 1.08998 * 109.46799 * 149.95363 * 1 2 3 24 24 H 1.07999 * 126.04843 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.20321 * 180.02562 * 6 5 4 26 26 H 1.08002 * 119.09031 * 179.97438 * 7 6 5 27 27 H 1.07997 * 119.13920 * 180.25119 * 8 7 6 28 28 H 1.09002 * 109.47120 * 144.72050 * 10 9 8 29 29 H 1.08998 * 109.46862 * 24.72853 * 10 9 8 30 30 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2339 1.0973 0.0000 4 6 3.5551 0.6905 -0.0006 5 6 3.5373 -0.7807 -0.0003 6 6 4.7688 -1.4705 -0.0014 7 6 5.9296 -0.7689 -0.0021 8 6 5.9459 0.6278 -0.0057 9 6 4.8005 1.3546 -0.0002 10 6 4.8573 2.8605 -0.0004 11 6 4.7508 3.3752 1.4365 12 6 4.8083 4.8811 1.4362 13 1 4.9101 5.4174 0.5044 14 6 4.7298 5.5741 2.6256 15 7 4.7795 6.8883 2.6253 16 14 4.5531 4.6464 4.2373 17 1 5.9000 4.3480 4.7869 18 1 3.7961 5.4783 5.2068 19 1 3.8228 3.3755 3.9993 20 7 2.2683 -1.1461 -0.0002 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3633 0.8904 -0.5132 23 1 -0.3633 -0.8896 -0.5145 24 1 1.8835 2.1189 0.0004 25 1 4.7866 -2.5503 -0.0016 26 1 6.8671 -1.3050 -0.0024 27 1 6.8952 1.1427 -0.0102 28 1 4.0298 3.2552 -0.5900 29 1 5.8017 3.1883 -0.4348 30 1 5.5783 2.9804 2.0260 31 1 3.8064 3.0473 1.8708 32 1 4.7247 7.3759 3.4621 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:10 Heat of formation + Delta-G solvation = 63.185207 kcal Electronic energy + Delta-G solvation = -15212.458140 eV Core-core repulsion = 12752.367285 eV Total energy + Delta-G solvation = -2460.090855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20613 -38.60341 -35.95947 -34.29881 -33.32530 -31.62403 -29.79781 -28.23366 -26.73697 -23.61465 -22.91484 -22.55423 -20.42310 -18.89656 -18.21187 -17.57030 -16.56330 -16.49105 -16.30840 -15.47843 -14.87839 -14.50323 -14.46053 -14.09426 -13.95454 -13.66982 -13.38036 -12.93913 -12.74222 -12.57055 -12.33215 -11.97754 -11.83288 -11.57475 -11.43022 -11.04685 -10.91238 -10.75239 -9.46806 -8.46370 -8.28483 -6.31556 -0.27520 0.93169 1.34998 1.36343 1.47412 1.48394 1.52125 2.35662 2.94873 3.07136 3.26843 3.73326 4.10904 4.19926 4.23124 4.36014 4.39028 4.52336 4.58882 4.63939 4.75668 4.77859 4.89237 5.04085 5.28972 5.43580 5.48718 5.54294 5.63819 5.70463 5.93245 5.93941 6.08365 6.29932 6.66267 6.76286 7.33109 8.87931 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.007576 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.989459 B = 3695.176994 C = 4251.806647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.325 5.325 3 C 0.085 3.915 4 C -0.229 4.229 5 C 0.084 3.916 6 C -0.138 4.138 7 C -0.059 4.059 8 C -0.182 4.182 9 C -0.004 4.004 10 C -0.062 4.062 11 C 0.004 3.996 12 C -0.527 4.527 13 H 0.040 0.960 14 C 0.011 3.989 15 N -0.948 5.948 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.254 1.254 20 N -0.349 5.349 21 H 0.095 0.905 22 H 0.122 0.878 23 H 0.103 0.897 24 H 0.207 0.793 25 H 0.141 0.859 26 H 0.158 0.842 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -15.800 -4.948 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.098 5.098 3 C -0.072 4.072 4 C -0.239 4.239 5 C -0.068 4.068 6 C -0.159 4.159 7 C -0.081 4.081 8 C -0.201 4.201 9 C -0.006 4.006 10 C -0.099 4.099 11 C -0.033 4.033 12 C -0.565 4.565 13 H 0.058 0.942 14 C -0.186 4.186 15 N -0.589 5.589 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.178 1.178 20 N -0.178 5.178 21 H 0.113 0.887 22 H 0.140 0.860 23 H 0.122 0.878 24 H 0.224 0.776 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.953 -16.700 -4.845 18.727 hybrid contribution 0.438 0.993 0.782 1.338 sum -6.515 -15.707 -4.063 17.483 Atomic orbital electron populations 1.22498 0.70938 1.06945 1.05552 1.48841 1.08977 1.03177 1.48850 1.23120 0.90432 0.94275 0.99401 1.19768 0.93684 0.93692 1.16712 1.21357 0.93095 0.93233 0.99155 1.20072 0.88182 0.99948 1.07701 1.20941 0.98498 0.93474 0.95154 1.20700 0.97819 0.94617 1.06976 1.19405 0.91351 0.95336 0.94512 1.20442 1.02207 0.89446 0.97816 1.19390 0.96275 0.93713 0.93969 1.21471 1.49506 0.91787 0.93715 0.94213 1.25873 0.94400 0.95441 1.02925 1.70051 1.52635 1.08008 1.28228 0.85772 0.79149 0.79256 0.79168 1.19392 1.20787 1.17794 1.77509 1.01219 1.06011 1.33068 0.88678 0.85993 0.87810 0.77649 0.84074 0.82478 0.85128 0.91630 0.91464 0.96936 0.96636 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 11.38 127.77 1.45 2.63 16 2 N -0.32 -8.76 3.95 -367.81 -1.45 -10.21 16 3 C 0.08 2.51 11.31 84.37 0.95 3.46 16 4 C -0.23 -7.99 6.13 -20.23 -0.12 -8.11 16 5 C 0.08 2.85 7.49 42.16 0.32 3.16 16 6 C -0.14 -3.99 10.08 22.38 0.23 -3.76 16 7 C -0.06 -1.56 9.89 22.02 0.22 -1.34 16 8 C -0.18 -5.69 9.53 22.02 0.21 -5.48 16 9 C 0.00 -0.13 5.15 -19.75 -0.10 -0.23 16 10 C -0.06 -2.43 5.21 29.85 0.16 -2.27 16 11 C 0.00 0.19 4.02 29.85 0.12 0.31 16 12 C -0.53 -29.92 9.66 25.60 0.25 -29.67 16 13 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 14 C 0.01 0.62 5.47 84.66 0.46 1.08 16 15 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 16 Si 0.94 44.65 27.47 68.60 1.88 46.54 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 20 N -0.35 -11.50 12.54 -48.70 -0.61 -12.11 16 21 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.12 1.10 8.13 -2.38 -0.02 1.08 16 23 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.21 5.04 8.06 -2.91 -0.02 5.02 16 25 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 26 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 27 H 0.13 3.72 8.03 -2.91 -0.02 3.70 16 28 H 0.07 2.49 8.07 -2.39 -0.02 2.48 16 29 H 0.07 2.60 8.03 -2.39 -0.02 2.59 16 30 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 31 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -72.74 277.79 5.30 -67.44 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.05 Total: 7.14 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 4.14 Total: -40.21 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -1.76 Total: -80.90 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -72.74 5.30 -67.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.621 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds