Wall clock time and date at job start Sun Mar 29 2020 21:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33988 * 125.02141 * 2 1 4 4 C 1.38247 * 107.90037 * 179.90080 * 3 2 1 5 5 C 1.41131 * 134.81102 * 180.12407 * 4 3 2 6 6 C 1.35652 * 119.53580 * 180.25367 * 5 4 3 7 7 C 1.39688 * 121.72520 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.09182 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47429 * 89.99979 * 8 7 6 10 10 C 1.50698 * 109.47429 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99754 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00202 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 120.00026 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47103 * 89.99640 * 14 12 10 16 16 H 1.48493 * 109.47104 * 209.99974 * 14 12 10 17 17 H 1.48500 * 109.46761 * 329.99828 * 14 12 10 18 18 C 1.35633 * 121.81697 * 359.97028 * 7 6 5 19 19 C 1.41156 * 119.59759 * 0.02562 * 18 7 6 20 20 N 1.32063 * 134.68539 * 180.02562 * 19 18 7 21 21 H 1.09001 * 109.47060 * 269.72374 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.71863 * 1 2 3 23 23 H 1.09000 * 109.47212 * 149.71945 * 1 2 3 24 24 H 1.07997 * 126.04693 * 0.02562 * 3 2 1 25 25 H 1.08001 * 120.23527 * 0.26926 * 5 4 3 26 26 H 1.08005 * 119.13888 * 179.97438 * 6 5 4 27 27 H 1.08998 * 109.47009 * 210.00603 * 8 7 6 28 28 H 1.09000 * 109.46954 * 329.99721 * 8 7 6 29 29 H 1.09007 * 109.47284 * 300.00285 * 9 8 7 30 30 H 1.09007 * 109.46979 * 59.99670 * 9 8 7 31 31 H 0.97003 * 120.00166 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.20330 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2340 1.0973 0.0000 4 6 3.5552 0.6903 0.0023 5 6 4.8005 1.3543 0.0056 6 6 5.9459 0.6276 0.0019 7 6 5.9296 -0.7692 -0.0056 8 6 7.2378 -1.5173 -0.0099 9 6 7.6809 -1.7782 1.4310 10 6 8.9894 -2.5257 1.4267 11 1 9.4583 -2.7880 0.4899 12 6 9.5885 -2.8738 2.6187 13 7 10.7301 -3.5265 2.6150 14 14 8.7777 -2.4194 4.2392 15 1 7.8689 -3.5148 4.6623 16 1 9.8220 -2.2147 5.2749 17 1 7.9978 -1.1672 4.0685 18 6 4.7688 -1.4707 -0.0090 19 6 3.5372 -0.7809 -0.0055 20 7 2.2681 -1.1462 -0.0068 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3633 0.8925 -0.5095 23 1 -0.3634 -0.8875 -0.5182 24 1 1.8836 2.1188 0.0004 25 1 4.8414 2.4336 0.0112 26 1 6.8954 1.1424 0.0040 27 1 7.1113 -2.4674 -0.5289 28 1 7.9948 -0.9223 -0.5208 29 1 7.8074 -0.8280 1.9500 30 1 6.9237 -2.3732 1.9419 31 1 11.1514 -3.7717 3.4536 32 1 4.7865 -2.5506 -0.0144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:13 Heat of formation + Delta-G solvation = 84.991080 kcal Electronic energy + Delta-G solvation = -14866.872818 eV Core-core repulsion = 12407.727537 eV Total energy + Delta-G solvation = -2459.145281 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10742 -37.64353 -33.95928 -32.64421 -32.04583 -30.28243 -28.57439 -27.38586 -24.86361 -22.46403 -21.52364 -20.50276 -19.83367 -17.03356 -16.83560 -16.46314 -15.63519 -14.98681 -14.30167 -14.19797 -13.80383 -13.25905 -13.06412 -12.77014 -12.64002 -12.52841 -11.71918 -11.61112 -11.46574 -10.89523 -10.86081 -10.17163 -10.10311 -9.95223 -9.78672 -9.62085 -9.12774 -8.48291 -8.14284 -7.38241 -5.99381 -3.97147 0.82108 2.10478 2.35821 2.61669 3.36686 3.43466 3.49387 4.15532 4.20981 4.51116 4.54024 4.81930 4.90149 5.09080 5.17894 5.35406 5.41283 5.51024 5.62273 5.86448 6.03572 6.21970 6.46809 6.54888 6.71230 6.78591 6.84683 6.91122 7.10392 7.23422 7.36973 7.52765 7.79370 7.84595 8.58552 9.05708 9.63599 11.14017 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041448 B = 0.005423 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.388065 B = 5162.097971 C = 5336.352195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.334 5.334 3 C 0.064 3.936 4 C -0.208 4.208 5 C -0.059 4.059 6 C -0.135 4.135 7 C -0.022 4.022 8 C -0.073 4.073 9 C -0.006 4.006 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.119 4.119 19 C 0.112 3.888 20 N -0.318 5.318 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.180 0.820 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 11.602 -5.457 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.109 5.109 3 C -0.091 4.091 4 C -0.217 4.217 5 C -0.079 4.079 6 C -0.154 4.154 7 C -0.026 4.026 8 C -0.110 4.110 9 C -0.044 4.044 10 C -0.558 4.558 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.140 4.140 19 C -0.041 4.041 20 N -0.146 5.146 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.197 0.803 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.443 10.491 -5.342 23.591 hybrid contribution 0.062 0.892 1.019 1.356 sum -20.381 11.383 -4.322 23.741 Atomic orbital electron populations 1.21987 0.74134 1.04807 1.03856 1.48440 1.07249 1.04218 1.50963 1.22500 0.90630 0.92945 1.03014 1.19620 0.92997 0.93829 1.15282 1.20150 0.90015 0.98637 0.99101 1.20611 0.98077 0.93647 1.03082 1.19884 0.95855 0.93652 0.93252 1.20717 0.91147 0.98694 1.00490 1.19556 0.96704 0.96772 0.91338 1.21159 1.04492 1.35597 0.94539 0.90878 1.24997 0.94668 0.94581 0.99097 1.69913 1.17425 1.40111 1.26926 0.86813 0.79285 0.79754 0.83722 1.20294 1.21426 1.18884 1.19740 0.87690 0.99450 1.07155 1.20998 0.92167 0.92882 0.98036 1.77702 1.01231 1.04035 1.31622 0.90172 0.89186 0.88858 0.80280 0.86266 0.85814 0.91468 0.91352 0.96375 0.96825 0.92780 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.38 59.85 0.68 1.29 16 2 N -0.33 -4.10 3.95 -67.60 -0.27 -4.37 16 3 C 0.06 0.73 11.50 -16.61 -0.19 0.54 16 4 C -0.21 -3.13 6.33 -105.19 -0.67 -3.79 16 5 C -0.06 -0.84 10.09 -39.41 -0.40 -1.23 16 6 C -0.13 -2.18 9.51 -39.97 -0.38 -2.56 16 7 C -0.02 -0.40 5.09 -105.01 -0.53 -0.94 16 8 C -0.07 -1.49 5.23 -27.89 -0.15 -1.63 16 9 C -0.01 -0.15 4.02 -27.89 -0.11 -0.27 16 10 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 11 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 14 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 18 C -0.12 -2.20 9.65 -39.41 -0.38 -2.58 16 19 C 0.11 1.98 7.49 -83.05 -0.62 1.36 16 20 N -0.32 -5.34 12.54 33.26 0.42 -4.92 16 21 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 27 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 28 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 30 H 0.01 0.34 7.57 -51.92 -0.39 -0.06 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 32 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 277.95 15.07 4.19 4.19 Total: -1.00 -34.94 277.95 -6.89 -41.82 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.15 Total: -3.59 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.18 Total: -23.27 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.92 Total: -36.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.94 -6.89 -41.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.813 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds