Wall clock time and date at job start Sun Mar 29 2020 21:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33988 * 125.02141 * 2 1 4 4 C 1.38247 * 107.90037 * 179.90080 * 3 2 1 5 5 C 1.41131 * 134.81102 * 180.12407 * 4 3 2 6 6 C 1.35652 * 119.53580 * 180.25367 * 5 4 3 7 7 C 1.39688 * 121.72520 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.09182 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47429 * 89.99979 * 8 7 6 10 10 C 1.50698 * 109.47429 * 180.02562 * 9 8 7 11 11 H 1.07993 * 119.99754 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00171 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00202 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 120.00026 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47103 * 89.99640 * 14 12 10 16 16 H 1.48493 * 109.47104 * 209.99974 * 14 12 10 17 17 H 1.48500 * 109.46761 * 329.99828 * 14 12 10 18 18 C 1.35633 * 121.81697 * 359.97028 * 7 6 5 19 19 C 1.41156 * 119.59759 * 0.02562 * 18 7 6 20 20 N 1.32063 * 134.68539 * 180.02562 * 19 18 7 21 21 H 1.09001 * 109.47060 * 269.72374 * 1 2 3 22 22 H 1.09004 * 109.47073 * 29.71863 * 1 2 3 23 23 H 1.09000 * 109.47212 * 149.71945 * 1 2 3 24 24 H 1.07997 * 126.04693 * 0.02562 * 3 2 1 25 25 H 1.08001 * 120.23527 * 0.26926 * 5 4 3 26 26 H 1.08005 * 119.13888 * 179.97438 * 6 5 4 27 27 H 1.08998 * 109.47009 * 210.00603 * 8 7 6 28 28 H 1.09000 * 109.46954 * 329.99721 * 8 7 6 29 29 H 1.09007 * 109.47284 * 300.00285 * 9 8 7 30 30 H 1.09007 * 109.46979 * 59.99670 * 9 8 7 31 31 H 0.97003 * 120.00166 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.20330 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2340 1.0973 0.0000 4 6 3.5552 0.6903 0.0023 5 6 4.8005 1.3543 0.0056 6 6 5.9459 0.6276 0.0019 7 6 5.9296 -0.7692 -0.0056 8 6 7.2378 -1.5173 -0.0099 9 6 7.6809 -1.7782 1.4310 10 6 8.9894 -2.5257 1.4267 11 1 9.4583 -2.7880 0.4899 12 6 9.5885 -2.8738 2.6187 13 7 10.7301 -3.5265 2.6150 14 14 8.7777 -2.4194 4.2392 15 1 7.8689 -3.5148 4.6623 16 1 9.8220 -2.2147 5.2749 17 1 7.9978 -1.1672 4.0685 18 6 4.7688 -1.4707 -0.0090 19 6 3.5372 -0.7809 -0.0055 20 7 2.2681 -1.1462 -0.0068 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3633 0.8925 -0.5095 23 1 -0.3634 -0.8875 -0.5182 24 1 1.8836 2.1188 0.0004 25 1 4.8414 2.4336 0.0112 26 1 6.8954 1.1424 0.0040 27 1 7.1113 -2.4674 -0.5289 28 1 7.9948 -0.9223 -0.5208 29 1 7.8074 -0.8280 1.9500 30 1 6.9237 -2.3732 1.9419 31 1 11.1514 -3.7717 3.4536 32 1 4.7865 -2.5506 -0.0144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:12 Heat of formation + Delta-G solvation = 62.359073 kcal Electronic energy + Delta-G solvation = -14867.854216 eV Core-core repulsion = 12407.727537 eV Total energy + Delta-G solvation = -2460.126679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15111 -38.87949 -35.70008 -34.11065 -33.43934 -31.75924 -29.72653 -28.66702 -26.39351 -23.63668 -23.04870 -21.76771 -21.20903 -18.98730 -17.97511 -17.63716 -16.50926 -16.34826 -16.16849 -15.58702 -14.88748 -14.80688 -14.32646 -14.10796 -13.96918 -13.63597 -13.39614 -12.94502 -12.88163 -12.61142 -12.21795 -11.82017 -11.66211 -11.59174 -11.33651 -11.17462 -11.11611 -10.76332 -9.32950 -8.53462 -8.29388 -6.32974 -0.24655 0.90125 1.35313 1.35734 1.49199 1.52233 1.57124 2.36058 2.93250 3.05955 3.26017 3.76485 4.07645 4.20195 4.22739 4.36912 4.41779 4.53157 4.66317 4.67751 4.69276 4.74736 4.87078 5.05133 5.26743 5.43539 5.44805 5.53670 5.61917 5.67920 5.93094 5.97937 6.11211 6.28618 6.69522 6.74298 7.31609 8.87358 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041448 B = 0.005423 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.388065 B = 5162.097971 C = 5336.352195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.327 5.327 3 C 0.104 3.896 4 C -0.242 4.242 5 C -0.027 4.027 6 C -0.173 4.173 7 C -0.026 4.026 8 C -0.064 4.064 9 C 0.001 3.999 10 C -0.532 4.532 11 H 0.037 0.963 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.946 3.054 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.249 1.249 18 C -0.147 4.147 19 C 0.084 3.916 20 N -0.367 5.367 21 H 0.096 0.904 22 H 0.134 0.866 23 H 0.090 0.910 24 H 0.242 0.758 25 H 0.163 0.837 26 H 0.133 0.867 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.009 0.991 31 H 0.267 0.733 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.816 15.023 -4.729 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.101 5.101 3 C -0.054 4.054 4 C -0.252 4.252 5 C -0.047 4.047 6 C -0.193 4.193 7 C -0.030 4.030 8 C -0.102 4.102 9 C -0.036 4.036 10 C -0.570 4.570 11 H 0.056 0.944 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.769 3.231 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.173 1.173 18 C -0.168 4.168 19 C -0.068 4.068 20 N -0.196 5.196 21 H 0.114 0.886 22 H 0.152 0.848 23 H 0.109 0.891 24 H 0.258 0.742 25 H 0.181 0.819 26 H 0.151 0.849 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.741 13.895 -4.629 27.895 hybrid contribution 0.887 -0.123 0.696 1.134 sum -22.854 13.771 -3.933 26.971 Atomic orbital electron populations 1.22509 0.70824 1.06962 1.05577 1.48960 1.09126 1.03484 1.48485 1.23428 0.88952 0.94904 0.98095 1.20067 0.95097 0.92547 1.17446 1.20565 0.88815 1.00517 0.94755 1.20685 0.99650 0.92555 1.06377 1.19667 0.94157 0.94846 0.94360 1.20505 0.92959 0.98868 0.97866 1.19429 0.94196 0.95946 0.94070 1.21493 1.06176 1.35942 0.93369 0.94448 1.25929 0.95208 0.94454 1.03247 1.70053 1.19146 1.41578 1.28244 0.85723 0.78548 0.80092 0.78728 1.19648 1.20360 1.17308 1.19675 0.88979 0.98882 1.09271 1.21050 0.92100 0.94742 0.98880 1.77627 1.01418 1.06698 1.33842 0.88552 0.84779 0.89091 0.74236 0.81935 0.84900 0.92476 0.91017 0.95935 0.97290 0.92418 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 11.38 127.77 1.45 2.15 16 2 N -0.33 -6.83 3.95 -367.80 -1.45 -8.28 16 3 C 0.10 1.82 11.50 84.37 0.97 2.79 16 4 C -0.24 -6.55 6.33 -20.23 -0.13 -6.68 16 5 C -0.03 -0.67 10.09 22.38 0.23 -0.45 16 6 C -0.17 -5.43 9.51 22.02 0.21 -5.22 16 7 C -0.03 -0.98 5.09 -20.12 -0.10 -1.08 16 8 C -0.06 -2.76 5.23 29.85 0.16 -2.60 16 9 C 0.00 0.05 4.02 29.85 0.12 0.17 16 10 C -0.53 -31.99 9.66 25.60 0.25 -31.75 16 11 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 12 C 0.01 0.52 5.47 84.65 0.46 0.98 16 13 N -0.95 -61.11 13.96 21.44 0.30 -60.81 16 14 Si 0.95 46.41 27.47 68.60 1.88 48.29 16 15 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 18 C -0.15 -5.66 9.65 22.38 0.22 -5.44 16 19 C 0.08 2.94 7.49 42.16 0.32 3.26 16 20 N -0.37 -12.04 12.54 -48.70 -0.61 -12.65 16 21 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.13 0.03 8.13 -2.38 -0.02 0.01 16 23 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.24 1.13 8.06 -2.91 -0.02 1.10 16 25 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 26 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 27 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 28 H 0.07 2.94 8.07 -2.39 -0.02 2.92 16 29 H 0.02 1.10 7.20 -2.38 -0.02 1.09 16 30 H 0.01 0.45 7.57 -2.38 -0.02 0.43 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -80.55 277.95 5.31 -75.23 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.05 Total: 2.09 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 4.15 Total: -43.87 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.76 Total: -81.75 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -80.55 5.31 -75.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.594 kcal (2) G-P(sol) polarization free energy of solvation -80.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds