Wall clock time and date at job start Sun Mar 29 2020 21:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00279 * 2 1 4 4 C 1.38209 * 119.99898 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00099 * 179.97438 * 4 3 2 6 6 C 1.52993 * 117.50078 * 188.61960 * 5 4 3 7 7 C 1.52999 * 60.00171 * 252.51115 * 6 5 4 8 8 C 1.38258 * 120.00474 * 359.94906 * 4 3 2 9 9 C 1.38218 * 119.99504 * 359.79106 * 8 4 3 10 10 C 1.38210 * 119.99744 * 179.97438 * 2 1 3 11 11 C 1.50703 * 120.00073 * 0.02562 * 10 2 1 12 12 C 1.53000 * 109.46912 * 84.99891 * 11 10 2 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00489 * 17 15 13 19 19 H 1.48505 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00464 * 17 15 13 21 21 H 1.08996 * 109.47332 * 270.03135 * 1 2 3 22 22 H 1.09003 * 109.46352 * 30.02953 * 1 2 3 23 23 H 1.08992 * 109.47270 * 150.02314 * 1 2 3 24 24 H 1.07995 * 119.99815 * 359.96708 * 3 2 1 25 25 H 1.09001 * 115.54817 * 334.33081 * 5 4 3 26 26 H 1.08998 * 117.50132 * 359.97438 * 6 5 4 27 27 H 1.09004 * 117.50224 * 145.02318 * 6 5 4 28 28 H 1.09001 * 117.49788 * 252.51066 * 7 6 5 29 29 H 1.08998 * 117.50099 * 107.48861 * 7 6 5 30 30 H 1.07996 * 120.00233 * 180.02562 * 8 4 3 31 31 H 1.07997 * 119.99900 * 180.25418 * 9 8 4 32 32 H 1.09002 * 109.47152 * 324.99663 * 11 10 2 33 33 H 1.09001 * 109.46980 * 204.99763 * 11 10 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99914 * 12 11 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 5.8494 2.4430 -0.2028 7 6 5.2745 2.7756 1.1755 8 6 4.2718 -0.0001 0.0021 9 6 3.5806 -1.1971 0.0076 10 6 2.1980 -1.1970 0.0005 11 6 1.4445 -2.5021 0.0005 12 6 1.0811 -2.8811 -1.4365 13 6 0.3281 -4.1866 -1.4366 14 1 0.1283 -4.6947 -0.5048 15 6 -0.1066 -4.7316 -2.6261 16 7 0.1362 -4.1125 -3.7607 17 14 -1.0394 -6.3501 -2.6262 18 1 -2.2801 -6.2063 -1.8228 19 1 -1.3922 -6.7179 -4.0211 20 1 -0.1871 -7.4126 -2.0350 21 1 -0.3634 0.0006 1.0276 22 1 -0.3632 0.8898 -0.5143 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6584 2.1326 -0.0005 25 1 3.8017 3.3524 -0.4268 26 1 6.3013 1.4600 -0.3354 27 1 6.3143 3.2541 -0.7632 28 1 5.3611 3.8055 1.5218 29 1 5.3481 2.0114 1.9493 30 1 5.3517 -0.0002 0.0030 31 1 4.1205 -2.1324 0.0130 32 1 0.5336 -2.3957 0.5897 33 1 2.0692 -3.2823 0.4352 34 1 0.4563 -2.1009 -1.8712 35 1 1.9919 -2.9875 -2.0256 36 1 -0.1700 -4.4957 -4.5976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:08 Heat of formation + Delta-G solvation = 20.839252 kcal Electronic energy + Delta-G solvation = -15221.482218 eV Core-core repulsion = 12863.095448 eV Total energy + Delta-G solvation = -2358.386770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.57614 -37.09522 -33.85693 -32.21356 -31.72159 -29.00807 -26.60348 -25.10396 -22.77434 -22.49104 -21.68243 -20.61487 -18.94570 -16.54524 -16.28046 -15.48004 -14.64884 -14.47794 -14.31992 -13.55844 -13.38316 -12.79262 -12.60859 -12.32405 -11.99071 -11.87610 -11.55806 -11.54398 -11.23545 -10.93289 -10.89322 -10.67179 -10.50232 -10.28055 -10.22914 -9.76813 -9.51190 -9.06227 -8.33339 -8.30280 -7.77233 -5.98262 -4.01518 1.75727 1.82683 3.33991 3.38497 3.40805 3.75460 4.27821 4.47261 4.61518 4.86106 4.99366 5.15956 5.33270 5.37002 5.38651 5.48814 5.58114 5.74042 5.80389 5.81336 6.02886 6.06227 6.10254 6.13276 6.27631 6.40731 6.49145 6.69748 6.71516 6.93713 6.95588 7.05641 7.24819 7.49773 7.70900 7.84521 8.02388 8.42295 9.05487 9.62416 11.12603 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.049298 B = 0.004960 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.835440 B = 5643.279599 C = 5816.006076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.114 4.114 4 C -0.072 4.072 5 C -0.108 4.108 6 C -0.180 4.180 7 C -0.174 4.174 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.060 4.060 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.285 12.143 8.252 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.072 4.072 5 C -0.126 4.126 6 C -0.217 4.217 7 C -0.211 4.211 8 C -0.144 4.144 9 C -0.134 4.134 10 C -0.060 4.060 11 C -0.118 4.118 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.253 12.128 8.055 16.266 hybrid contribution -0.432 -0.860 -0.204 0.984 sum 6.821 11.269 7.851 15.334 Atomic orbital electron populations 1.20896 0.91353 1.03667 1.01788 1.19765 0.96137 0.92374 0.99829 1.20706 0.93117 0.97279 1.02152 1.18918 0.93201 0.92662 1.02454 1.20969 0.91491 0.96880 1.03265 1.23046 0.95663 1.03220 0.99726 1.23001 1.03945 1.02303 0.91813 1.20880 0.99173 0.92067 1.02312 1.21027 0.93966 0.97604 1.00792 1.20240 0.93653 0.95904 0.96245 1.20841 0.98058 0.91175 1.01736 1.19068 0.96631 0.96107 0.88840 1.21229 1.35667 1.06502 0.92722 0.92685 1.25014 0.96210 0.97447 0.95647 1.69962 1.46577 1.39120 0.97674 0.86671 0.80365 0.84096 0.76943 1.20224 1.21302 1.20254 0.91838 0.92291 0.89529 0.86774 0.87401 0.88348 0.88762 0.88851 0.88707 0.86759 0.86291 0.92054 0.92460 0.96190 0.96561 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.22 36.01 0.33 -1.63 16 2 C -0.08 -1.43 5.88 -104.62 -0.62 -2.05 16 3 C -0.11 -1.80 9.39 -39.59 -0.37 -2.17 16 4 C -0.07 -1.08 5.61 -104.62 -0.59 -1.66 16 5 C -0.11 -1.28 6.04 -91.77 -0.55 -1.84 16 6 C -0.18 -1.84 9.86 -26.74 -0.26 -2.10 16 7 C -0.17 -1.75 10.16 -26.73 -0.27 -2.02 16 8 C -0.13 -1.95 9.30 -39.58 -0.37 -2.32 16 9 C -0.12 -2.03 9.68 -39.58 -0.38 -2.41 16 10 C -0.06 -1.16 5.13 -104.62 -0.54 -1.69 16 11 C -0.08 -1.71 4.59 -27.88 -0.13 -1.84 16 12 C 0.03 0.80 4.76 -27.88 -0.13 0.66 16 13 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 23 H 0.09 1.63 5.43 -51.93 -0.28 1.34 16 24 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 25 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.02 6.18 -51.93 -0.32 0.70 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 1.50 6.02 -52.49 -0.32 1.19 16 31 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.06 1.25 6.99 -51.93 -0.36 0.89 16 33 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.02 0.55 6.91 -51.93 -0.36 0.19 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -30.26 297.02 -9.50 -39.76 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.40 Total: 0.05 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: -4.29 Total: -34.61 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.26 -9.50 -39.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.601 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds