Wall clock time and date at job start Sun Mar 29 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00279 * 2 1 4 4 C 1.38209 * 119.99898 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00099 * 179.97438 * 4 3 2 6 6 C 1.52993 * 117.50078 * 188.61960 * 5 4 3 7 7 C 1.52999 * 60.00171 * 252.51115 * 6 5 4 8 8 C 1.38258 * 120.00474 * 359.94906 * 4 3 2 9 9 C 1.38218 * 119.99504 * 359.79106 * 8 4 3 10 10 C 1.38210 * 119.99744 * 179.97438 * 2 1 3 11 11 C 1.50703 * 120.00073 * 0.02562 * 10 2 1 12 12 C 1.53000 * 109.46912 * 84.99891 * 11 10 2 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00489 * 17 15 13 19 19 H 1.48505 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00464 * 17 15 13 21 21 H 1.08996 * 109.47332 * 270.03135 * 1 2 3 22 22 H 1.09003 * 109.46352 * 30.02953 * 1 2 3 23 23 H 1.08992 * 109.47270 * 150.02314 * 1 2 3 24 24 H 1.07995 * 119.99815 * 359.96708 * 3 2 1 25 25 H 1.09001 * 115.54817 * 334.33081 * 5 4 3 26 26 H 1.08998 * 117.50132 * 359.97438 * 6 5 4 27 27 H 1.09004 * 117.50224 * 145.02318 * 6 5 4 28 28 H 1.09001 * 117.49788 * 252.51066 * 7 6 5 29 29 H 1.08998 * 117.50099 * 107.48861 * 7 6 5 30 30 H 1.07996 * 120.00233 * 180.02562 * 8 4 3 31 31 H 1.07997 * 119.99900 * 180.25418 * 9 8 4 32 32 H 1.09002 * 109.47152 * 324.99663 * 11 10 2 33 33 H 1.09001 * 109.46980 * 204.99763 * 11 10 2 34 34 H 1.09001 * 109.47194 * 299.99742 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99914 * 12 11 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 5.8494 2.4430 -0.2028 7 6 5.2745 2.7756 1.1755 8 6 4.2718 -0.0001 0.0021 9 6 3.5806 -1.1971 0.0076 10 6 2.1980 -1.1970 0.0005 11 6 1.4445 -2.5021 0.0005 12 6 1.0811 -2.8811 -1.4365 13 6 0.3281 -4.1866 -1.4366 14 1 0.1283 -4.6947 -0.5048 15 6 -0.1066 -4.7316 -2.6261 16 7 0.1362 -4.1125 -3.7607 17 14 -1.0394 -6.3501 -2.6262 18 1 -2.2801 -6.2063 -1.8228 19 1 -1.3922 -6.7179 -4.0211 20 1 -0.1871 -7.4126 -2.0350 21 1 -0.3634 0.0006 1.0276 22 1 -0.3632 0.8898 -0.5143 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6584 2.1326 -0.0005 25 1 3.8017 3.3524 -0.4268 26 1 6.3013 1.4600 -0.3354 27 1 6.3143 3.2541 -0.7632 28 1 5.3611 3.8055 1.5218 29 1 5.3481 2.0114 1.9493 30 1 5.3517 -0.0002 0.0030 31 1 4.1205 -2.1324 0.0130 32 1 0.5336 -2.3957 0.5897 33 1 2.0692 -3.2823 0.4352 34 1 0.4563 -2.1009 -1.8712 35 1 1.9919 -2.9875 -2.0256 36 1 -0.1700 -4.4957 -4.5976 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060592.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:07 Heat of formation + Delta-G solvation = 6.636953 kcal Electronic energy + Delta-G solvation = -15222.098075 eV Core-core repulsion = 12863.095448 eV Total energy + Delta-G solvation = -2359.002628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.80706 -38.14493 -35.72487 -33.85389 -33.19705 -30.65479 -28.02787 -26.82738 -24.24070 -23.40615 -22.84938 -22.28825 -20.16807 -18.54676 -17.50771 -16.77112 -16.53189 -15.89068 -15.45566 -14.86222 -14.71570 -14.41809 -14.14033 -13.95737 -13.54493 -13.15738 -13.04695 -12.80371 -12.70044 -12.55685 -12.37839 -12.02646 -11.99012 -11.63830 -11.55981 -11.26153 -11.22011 -11.02749 -10.54874 -9.58315 -9.10631 -8.19164 -6.31677 0.46658 0.53495 1.39914 1.43232 1.51190 2.40925 2.70345 3.13253 3.21176 3.66506 3.93612 4.02714 4.08890 4.17259 4.20178 4.32765 4.46186 4.50526 4.70508 4.81085 4.81728 4.87022 4.88363 4.99533 5.01519 5.10854 5.19978 5.28754 5.32390 5.34908 5.51034 5.58386 5.68814 5.73295 5.85297 5.95423 6.18793 6.24384 6.84967 7.37678 8.92052 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.049298 B = 0.004960 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.835440 B = 5643.279599 C = 5816.006076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.128 4.128 6 C -0.175 4.175 7 C -0.161 4.161 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.095 4.095 11 C -0.064 4.064 12 C 0.041 3.959 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.267 1.267 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.139 0.861 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.057 0.943 34 H -0.004 1.004 35 H -0.017 1.017 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 13.238 9.242 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.065 4.065 5 C -0.146 4.146 6 C -0.212 4.212 7 C -0.198 4.198 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.095 4.095 11 C -0.102 4.102 12 C 0.004 3.996 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.157 0.843 25 H 0.139 0.861 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.156 0.844 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.014 0.986 35 H 0.001 0.999 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.779 13.226 9.064 17.821 hybrid contribution -0.523 -1.102 -0.511 1.323 sum 7.256 12.124 8.553 16.516 Atomic orbital electron populations 1.20858 0.90852 1.02875 1.02744 1.19989 0.96799 0.92695 0.99909 1.20999 0.93781 0.97419 1.01642 1.19330 0.93270 0.94001 0.99921 1.21038 0.92358 0.95604 1.05617 1.23154 0.94118 1.03810 1.00079 1.23073 1.01947 1.03424 0.91311 1.21146 1.00405 0.91524 1.01715 1.21175 0.93578 0.98790 1.01078 1.20137 0.94427 0.95340 0.99596 1.20537 0.98570 0.92775 0.98289 1.18875 0.94333 0.94941 0.91492 1.21676 1.35939 1.07433 0.93229 0.92021 1.25984 0.97094 1.01478 0.95104 1.70108 1.47753 1.41098 0.98410 0.85497 0.79162 0.79136 0.77238 1.18981 1.20838 1.19179 0.89982 0.90456 0.92809 0.84302 0.86133 0.88679 0.86927 0.86717 0.89202 0.84440 0.86191 0.91710 0.92459 0.98610 0.99904 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 9.22 71.24 0.66 -3.16 16 2 C -0.09 -3.32 5.88 -19.87 -0.12 -3.44 16 3 C -0.12 -3.62 9.39 22.27 0.21 -3.41 16 4 C -0.07 -1.83 5.61 -19.86 -0.11 -1.94 16 5 C -0.13 -2.67 6.04 -11.54 -0.07 -2.74 16 6 C -0.17 -3.02 9.86 30.59 0.30 -2.72 16 7 C -0.16 -2.69 10.16 30.59 0.31 -2.37 16 8 C -0.13 -3.89 9.30 22.27 0.21 -3.68 16 9 C -0.13 -4.55 9.68 22.27 0.22 -4.33 16 10 C -0.09 -3.73 5.13 -19.87 -0.10 -3.83 16 11 C -0.06 -2.84 4.59 29.85 0.14 -2.70 16 12 C 0.04 2.23 4.76 29.85 0.14 2.37 16 13 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 17 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 23 H 0.05 2.10 5.43 -2.39 -0.01 2.09 16 24 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 25 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 1.71 6.18 -2.39 -0.01 1.69 16 27 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.14 3.37 6.02 -2.91 -0.02 3.35 16 31 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.06 2.74 6.99 -2.39 -0.02 2.72 16 33 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 34 H 0.00 -0.26 6.91 -2.39 -0.02 -0.28 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -66.44 297.02 5.83 -60.61 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.05 Total: 13.24 kcal Atomic # 6 Polarization: -65.34 SS G_CDS: 2.48 Total: -62.87 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.28 Total: -57.76 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.44 5.83 -60.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060592.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.242 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds