Wall clock time and date at job start Sun Mar 29 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33987 * 125.01780 * 2 1 4 4 C 1.38254 * 107.90457 * 179.97438 * 3 2 1 5 5 C 1.41122 * 134.81819 * 180.02562 * 4 3 2 6 6 C 1.35652 * 119.53838 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.13771 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47021 * 90.00473 * 7 6 5 9 9 C 1.50700 * 109.47021 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99973 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99633 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99862 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47216 * 90.00270 * 13 11 9 15 15 H 1.48511 * 109.46928 * 210.00255 * 13 11 9 16 16 H 1.48499 * 109.47207 * 329.99882 * 13 11 9 17 17 C 1.39688 * 121.72168 * 359.97438 * 6 5 4 18 18 C 1.35627 * 121.82046 * 0.02562 * 17 6 5 19 19 C 1.41159 * 119.59587 * 359.97438 * 18 17 6 20 20 N 1.32059 * 134.68210 * 180.32222 * 19 18 17 21 21 H 1.09001 * 109.47060 * 90.00514 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.00003 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.00086 * 1 2 3 24 24 H 1.07997 * 126.04686 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.23228 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.46763 * 210.00236 * 7 6 5 27 27 H 1.08998 * 109.47132 * 329.99780 * 7 6 5 28 28 H 1.09003 * 109.46428 * 299.99620 * 8 7 6 29 29 H 1.08993 * 109.47300 * 59.99843 * 8 7 6 30 30 H 0.97003 * 119.99139 * 179.97438 * 12 11 9 31 31 H 1.08001 * 119.08723 * 180.02562 * 17 6 5 32 32 H 1.08002 * 120.20362 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2339 1.0973 0.0000 4 6 3.5552 0.6905 0.0006 5 6 4.8005 1.3545 0.0013 6 6 5.9459 0.6278 0.0023 7 6 7.2707 1.3462 0.0025 8 6 7.7184 1.5900 1.4451 9 6 9.0434 2.3078 1.4453 10 1 9.5189 2.5641 0.5100 11 6 9.6487 2.6375 2.6394 12 7 9.0699 2.3250 3.7782 13 14 11.2908 3.5278 2.6396 14 1 11.0587 4.9946 2.6383 15 1 12.0590 3.1493 3.8530 16 1 12.0604 3.1473 1.4279 17 6 5.9296 -0.7690 0.0031 18 6 4.7688 -1.4705 0.0025 19 6 3.5373 -0.7807 0.0015 20 7 2.2682 -1.1461 0.0060 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.8835 2.1188 -0.0004 25 1 4.8413 2.4338 0.0019 26 1 8.0145 0.7367 -0.5107 27 1 7.1661 2.3014 -0.5120 28 1 6.9744 2.1995 1.9581 29 1 7.8230 0.6348 1.9595 30 1 9.4960 2.5566 4.6183 31 1 6.8671 -1.3050 0.0043 32 1 4.7866 -2.5504 0.0036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:15 Heat of formation + Delta-G solvation = 81.477990 kcal Electronic energy + Delta-G solvation = -14800.445136 eV Core-core repulsion = 12341.147515 eV Total energy + Delta-G solvation = -2459.297620 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01337 -37.51580 -33.93279 -32.60038 -31.44025 -30.73965 -28.11963 -27.12540 -24.60288 -22.56958 -21.66727 -20.30376 -19.99325 -16.89245 -16.58865 -16.22156 -15.55278 -14.75975 -14.41166 -14.17363 -13.67153 -13.18954 -12.94048 -12.80528 -12.41249 -12.36119 -11.64244 -11.36219 -11.19939 -10.87484 -10.65973 -10.51802 -10.05897 -9.95685 -9.72675 -9.36409 -9.02318 -8.30934 -8.23838 -7.13268 -5.94758 -3.97603 0.91072 2.20970 2.43608 2.71940 3.35002 3.41233 3.44671 4.25668 4.29384 4.50533 4.67075 4.88467 4.99214 5.14395 5.31312 5.40643 5.52281 5.60113 5.82087 5.93385 6.15642 6.32882 6.56099 6.75003 6.81057 6.88548 6.96528 7.07672 7.28334 7.37807 7.75162 7.84890 7.91013 8.06598 8.47025 9.10031 9.66169 11.16175 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053019 B = 0.004779 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.981134 B = 5857.186787 C = 6039.649222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.334 5.334 3 C 0.060 3.940 4 C -0.191 4.191 5 C -0.060 4.060 6 C -0.092 4.092 7 C -0.075 4.075 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.056 4.056 18 C -0.119 4.119 19 C 0.099 3.901 20 N -0.320 5.320 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.181 0.819 25 H 0.122 0.878 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.127 0.873 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 -3.049 -8.033 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.109 5.109 3 C -0.094 4.094 4 C -0.200 4.200 5 C -0.081 4.081 6 C -0.094 4.094 7 C -0.113 4.113 8 C -0.009 4.009 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.079 4.079 18 C -0.140 4.140 19 C -0.054 4.054 20 N -0.148 5.148 21 H 0.097 0.903 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.198 0.802 25 H 0.140 0.860 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.375 -4.067 -7.837 18.604 hybrid contribution 1.281 1.242 0.234 1.799 sum -15.094 -2.825 -7.603 17.136 Atomic orbital electron populations 1.21972 0.74208 1.04843 1.03684 1.48370 1.07145 1.04181 1.51245 1.22519 0.90642 0.92941 1.03337 1.19649 0.93056 0.93564 1.13776 1.20070 0.89255 0.99051 0.99687 1.19738 0.96336 0.93346 0.99935 1.20795 0.90946 0.98086 1.01450 1.19092 0.95731 0.96982 0.89066 1.21290 1.05191 1.37188 0.92277 0.92616 1.25022 0.97647 0.96067 0.95688 1.69981 1.38909 1.47284 0.97235 0.86616 0.84061 0.79963 0.77483 1.20723 1.21282 1.19857 1.20729 0.97495 0.94020 0.95624 1.19790 0.88444 0.98930 1.06826 1.20943 0.92135 0.93157 0.99140 1.77604 1.01188 1.04399 1.31627 0.90285 0.88965 0.89145 0.80183 0.86043 0.92364 0.92437 0.96487 0.96434 0.93060 0.85551 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.38 59.85 0.68 1.35 16 2 N -0.33 -4.33 3.95 -67.60 -0.27 -4.60 16 3 C 0.06 0.78 11.50 -16.61 -0.19 0.59 16 4 C -0.19 -3.19 6.33 -105.19 -0.67 -3.85 16 5 C -0.06 -1.07 9.66 -39.41 -0.38 -1.45 16 6 C -0.09 -1.74 5.09 -105.01 -0.53 -2.28 16 7 C -0.08 -1.57 5.23 -27.88 -0.15 -1.72 16 8 C 0.03 0.74 4.95 -27.88 -0.14 0.60 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 13 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.06 -0.98 9.51 -39.97 -0.38 -1.36 16 18 C -0.12 -1.99 10.08 -39.41 -0.40 -2.39 16 19 C 0.10 1.75 7.49 -83.05 -0.62 1.12 16 20 N -0.32 -5.34 12.54 33.26 0.42 -4.92 16 21 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 24 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 26 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 27 H 0.06 1.15 8.06 -51.93 -0.42 0.74 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 281.56 15.07 4.24 4.24 Total: -1.00 -34.15 281.56 -7.26 -41.41 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.18 Total: -3.39 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -3.19 Total: -22.95 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.89 Total: -36.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.15 -7.26 -41.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.884 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds