Wall clock time and date at job start Sun Mar 29 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.33987 * 125.01780 * 2 1 4 4 C 1.38254 * 107.90457 * 179.97438 * 3 2 1 5 5 C 1.41122 * 134.81819 * 180.02562 * 4 3 2 6 6 C 1.35652 * 119.53838 * 179.97438 * 5 4 3 7 7 C 1.50700 * 119.13771 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47021 * 90.00473 * 7 6 5 9 9 C 1.50700 * 109.47021 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99973 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99633 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99862 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47216 * 90.00270 * 13 11 9 15 15 H 1.48511 * 109.46928 * 210.00255 * 13 11 9 16 16 H 1.48499 * 109.47207 * 329.99882 * 13 11 9 17 17 C 1.39688 * 121.72168 * 359.97438 * 6 5 4 18 18 C 1.35627 * 121.82046 * 0.02562 * 17 6 5 19 19 C 1.41159 * 119.59587 * 359.97438 * 18 17 6 20 20 N 1.32059 * 134.68210 * 180.32222 * 19 18 17 21 21 H 1.09001 * 109.47060 * 90.00514 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.00003 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.00086 * 1 2 3 24 24 H 1.07997 * 126.04686 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.23228 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.46763 * 210.00236 * 7 6 5 27 27 H 1.08998 * 109.47132 * 329.99780 * 7 6 5 28 28 H 1.09003 * 109.46428 * 299.99620 * 8 7 6 29 29 H 1.08993 * 109.47300 * 59.99843 * 8 7 6 30 30 H 0.97003 * 119.99139 * 179.97438 * 12 11 9 31 31 H 1.08001 * 119.08723 * 180.02562 * 17 6 5 32 32 H 1.08002 * 120.20362 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2339 1.0973 0.0000 4 6 3.5552 0.6905 0.0006 5 6 4.8005 1.3545 0.0013 6 6 5.9459 0.6278 0.0023 7 6 7.2707 1.3462 0.0025 8 6 7.7184 1.5900 1.4451 9 6 9.0434 2.3078 1.4453 10 1 9.5189 2.5641 0.5100 11 6 9.6487 2.6375 2.6394 12 7 9.0699 2.3250 3.7782 13 14 11.2908 3.5278 2.6396 14 1 11.0587 4.9946 2.6383 15 1 12.0590 3.1493 3.8530 16 1 12.0604 3.1473 1.4279 17 6 5.9296 -0.7690 0.0031 18 6 4.7688 -1.4705 0.0025 19 6 3.5373 -0.7807 0.0015 20 7 2.2682 -1.1461 0.0060 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.8835 2.1188 -0.0004 25 1 4.8413 2.4338 0.0019 26 1 8.0145 0.7367 -0.5107 27 1 7.1661 2.3014 -0.5120 28 1 6.9744 2.1995 1.9581 29 1 7.8230 0.6348 1.9595 30 1 9.4960 2.5566 4.6183 31 1 6.8671 -1.3050 0.0043 32 1 4.7866 -2.5504 0.0036 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:15 Heat of formation + Delta-G solvation = 60.647203 kcal Electronic energy + Delta-G solvation = -14801.348426 eV Core-core repulsion = 12341.147515 eV Total energy + Delta-G solvation = -2460.200911 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15333 -38.82433 -35.69764 -34.17445 -32.59735 -32.34509 -29.56426 -28.30473 -26.34149 -23.79806 -23.30065 -21.57527 -21.42105 -18.52376 -17.92470 -17.66735 -16.52735 -16.45498 -16.08270 -15.49710 -14.85052 -14.50042 -14.22006 -14.03849 -13.88834 -13.69207 -13.32800 -12.91670 -12.80523 -12.44442 -12.29998 -12.11378 -11.65872 -11.48496 -11.26334 -11.11371 -10.97289 -10.51111 -9.45333 -8.43263 -8.14066 -6.26915 -0.26499 0.90080 1.43123 1.44765 1.50604 1.55788 1.56087 2.44756 2.93788 3.17700 3.25529 3.76726 4.14456 4.18118 4.23862 4.39725 4.43170 4.56291 4.62830 4.68165 4.78346 4.88014 4.98351 5.22269 5.28233 5.52174 5.54972 5.59579 5.66974 5.90719 5.96728 6.01119 6.07895 6.29299 6.66840 6.90966 7.42398 8.96500 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053019 B = 0.004779 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.981134 B = 5857.186787 C = 6039.649222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.324 5.324 3 C 0.091 3.909 4 C -0.230 4.230 5 C -0.050 4.050 6 C -0.126 4.126 7 C -0.058 4.058 8 C 0.035 3.965 9 C -0.542 4.542 10 H 0.064 0.936 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.966 3.034 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.262 1.262 17 C -0.068 4.068 18 C -0.125 4.125 19 C 0.075 3.925 20 N -0.353 5.353 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.127 0.873 24 H 0.232 0.768 25 H 0.132 0.868 26 H 0.061 0.939 27 H 0.064 0.936 28 H -0.011 1.011 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.132 0.868 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 -1.823 -8.895 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.098 5.098 3 C -0.066 4.066 4 C -0.240 4.240 5 C -0.071 4.071 6 C -0.128 4.128 7 C -0.095 4.095 8 C -0.002 4.002 9 C -0.580 4.580 10 H 0.082 0.918 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.186 1.186 17 C -0.090 4.090 18 C -0.146 4.146 19 C -0.076 4.076 20 N -0.182 5.182 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.145 0.855 24 H 0.248 0.752 25 H 0.150 0.850 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.787 -2.867 -8.719 20.015 hybrid contribution 1.448 0.884 0.504 1.770 sum -16.338 -1.983 -8.215 18.395 Atomic orbital electron populations 1.22516 0.70691 1.06877 1.05755 1.48903 1.09092 1.03304 1.48531 1.23270 0.89190 0.94841 0.99322 1.19931 0.94349 0.93378 1.16326 1.20238 0.89550 0.99548 0.97719 1.19599 0.95687 0.94020 1.03468 1.20496 0.92427 0.98842 0.97763 1.18944 0.94602 0.94585 0.92044 1.21753 1.06148 1.37296 0.92798 0.91808 1.25997 1.01832 0.96853 0.95184 1.70129 1.40885 1.48575 0.97996 0.85439 0.78932 0.78772 0.77849 1.19686 1.20967 1.18577 1.20775 0.98165 0.93713 0.96385 1.19971 0.88352 0.99752 1.06564 1.21190 0.92692 0.94027 0.99697 1.77542 1.01080 1.06445 1.33122 0.88104 0.88702 0.85451 0.75203 0.85023 0.91982 0.91774 0.99244 0.99432 0.92895 0.85002 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.38 127.77 1.45 2.27 16 2 N -0.32 -7.42 3.95 -367.79 -1.45 -8.88 16 3 C 0.09 2.05 11.50 84.37 0.97 3.02 16 4 C -0.23 -7.44 6.33 -20.23 -0.13 -7.56 16 5 C -0.05 -1.77 9.66 22.38 0.22 -1.56 16 6 C -0.13 -4.90 5.09 -20.11 -0.10 -5.00 16 7 C -0.06 -2.48 5.23 29.85 0.16 -2.33 16 8 C 0.04 1.93 4.95 29.85 0.15 2.07 16 9 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 10 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 11 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 12 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 13 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 C -0.07 -2.47 9.51 22.02 0.21 -2.26 16 18 C -0.13 -4.31 10.08 22.38 0.23 -4.08 16 19 C 0.08 2.65 7.49 42.16 0.32 2.96 16 20 N -0.35 -11.38 12.54 -48.70 -0.61 -11.99 16 21 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 22 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.13 0.42 8.13 -2.39 -0.02 0.40 16 24 H 0.23 2.68 8.06 -2.91 -0.02 2.66 16 25 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 26 H 0.06 2.55 8.07 -2.39 -0.02 2.53 16 27 H 0.06 2.60 8.06 -2.39 -0.02 2.58 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -76.13 281.56 5.51 -70.63 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.10 Total: 4.60 kcal Atomic # 6 Polarization: -47.29 SS G_CDS: 4.16 Total: -43.13 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.78 Total: -78.76 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.13 5.51 -70.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.275 kcal (2) G-P(sol) polarization free energy of solvation -76.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds