Wall clock time and date at job start Sun Mar 29 2020 21:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36669 * 125.04747 * 2 1 4 4 C 1.34457 * 109.96458 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.51632 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47212 * 265.02083 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46838 * 89.99826 * 11 9 7 13 13 H 1.48497 * 109.47419 * 209.99978 * 11 9 7 14 14 H 1.48499 * 109.47011 * 330.00539 * 11 9 7 15 15 C 1.45995 * 106.97083 * 0.25906 * 4 3 2 16 16 C 1.39839 * 135.23511 * 180.55260 * 15 4 3 17 17 C 1.36646 * 118.69540 * 179.52204 * 16 15 4 18 18 N 1.32299 * 121.32297 * 359.69644 * 17 16 15 19 19 C 1.31739 * 122.56935 * 0.02562 * 18 17 16 20 20 C 1.37538 * 125.04933 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47335 * 89.97691 * 1 2 3 22 22 H 1.08993 * 109.47403 * 209.97910 * 1 2 3 23 23 H 1.09000 * 109.47122 * 329.97776 * 1 2 3 24 24 H 1.08001 * 125.01767 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47060 * 25.02138 * 5 4 3 26 26 H 1.09001 * 109.47380 * 145.02226 * 5 4 3 27 27 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 29 29 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 30 30 H 1.07995 * 120.65317 * 359.20064 * 16 15 4 31 31 H 1.07998 * 119.33865 * 179.71970 * 17 16 15 32 32 H 1.08008 * 119.85797 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2498 1.1189 0.0000 4 6 3.5481 0.7690 -0.0006 5 6 4.7291 1.7051 -0.0013 6 6 5.2059 1.9235 -1.4386 7 6 6.3865 2.8601 -1.4394 8 1 6.7597 3.2593 -0.5079 9 6 6.9908 3.2066 -2.6293 10 7 6.5366 2.7200 -3.7636 11 14 8.4538 4.3681 -2.6304 12 1 9.7088 3.5835 -2.5082 13 1 8.4733 5.1385 -3.8997 14 1 8.3425 5.3054 -1.4840 15 6 3.5962 -0.6901 -0.0073 16 6 4.6130 -1.6501 -0.0014 17 6 4.2674 -2.9721 -0.0015 18 7 3.0000 -3.3515 -0.0011 19 6 2.0021 -2.4914 -0.0010 20 6 2.2549 -1.1260 0.0005 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.8816 2.1342 -0.0004 25 1 4.4356 2.6606 0.4333 26 1 5.5372 1.2710 0.5875 27 1 5.4994 0.9680 -1.8732 28 1 4.3979 2.3576 -2.0275 29 1 6.9620 2.9635 -4.6007 30 1 5.6512 -1.3524 -0.0020 31 1 5.0443 -3.7222 -0.0016 32 1 0.9832 -2.8498 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:25 Heat of formation + Delta-G solvation = 57.629987 kcal Electronic energy + Delta-G solvation = -15131.105655 eV Core-core repulsion = 12670.773908 eV Total energy + Delta-G solvation = -2460.331747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30497 -37.89657 -34.51245 -32.77510 -30.93514 -30.36708 -29.18165 -26.52394 -24.41399 -23.14563 -21.94932 -21.01718 -19.10200 -16.87230 -16.61893 -16.16734 -15.35901 -15.28510 -14.43896 -14.30175 -13.98806 -13.37297 -13.15714 -12.81416 -12.52162 -12.07223 -11.80437 -11.69833 -11.39706 -10.92601 -10.88716 -10.58293 -9.85378 -9.74806 -9.33544 -9.30497 -9.04996 -8.32451 -8.25643 -7.28493 -5.96844 -3.99892 1.27552 1.76537 2.93226 3.04454 3.33422 3.39676 3.42817 4.23281 4.48180 4.66224 4.79349 4.88948 5.03504 5.12069 5.17767 5.34683 5.38534 5.57564 5.72131 5.91763 6.00294 6.15865 6.41721 6.67214 6.73369 6.89425 6.94937 7.15651 7.33933 7.47955 7.73048 7.88660 8.04594 8.30849 8.44648 9.07888 9.64036 11.14092 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033763 B = 0.006111 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.121050 B = 4580.536752 C = 5073.207506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.482 5.482 3 C 0.042 3.958 4 C -0.136 4.136 5 C -0.044 4.044 6 C 0.030 3.970 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.070 4.070 16 C -0.105 4.105 17 C 0.038 3.962 18 N -0.473 5.473 19 C 0.100 3.900 20 C 0.039 3.961 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.170 0.830 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 -6.232 8.130 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.143 4.143 5 C -0.082 4.082 6 C -0.007 4.007 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.081 4.081 16 C -0.125 4.125 17 C -0.111 4.111 18 N -0.182 5.182 19 C -0.068 4.068 20 C -0.070 4.070 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.187 0.813 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.551 -7.103 7.941 15.714 hybrid contribution 0.908 1.612 -0.269 1.870 sum -10.643 -5.490 7.671 14.222 Atomic orbital electron populations 1.21897 0.77382 1.03870 1.02897 1.43608 1.05631 1.04083 1.63314 1.21740 0.90034 0.90831 1.05661 1.20809 0.94845 0.91496 1.07119 1.20197 0.91944 0.94802 1.01302 1.19056 0.95650 0.96779 0.89190 1.21281 1.14275 1.27698 0.92708 0.92619 1.25025 0.97327 0.96387 0.95682 1.69982 1.41160 1.44613 0.97655 0.86615 0.83096 0.81047 0.77363 1.20661 1.21289 1.19871 1.19408 0.91852 0.94052 1.02821 1.21356 0.99916 0.92591 0.98628 1.21946 0.92769 0.94408 1.02016 1.67477 1.00371 1.37686 1.12698 1.21579 0.98406 0.85487 1.01320 1.19357 0.91255 0.89811 1.06609 0.91378 0.90350 0.89979 0.81307 0.92387 0.92378 0.96551 0.96717 0.93053 0.84653 0.83199 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 11.04 59.85 0.66 1.38 16 2 N -0.48 -6.85 3.17 -121.80 -0.39 -7.23 16 3 C 0.04 0.67 11.20 -16.73 -0.19 0.48 16 4 C -0.14 -2.57 5.56 -102.85 -0.57 -3.15 16 5 C -0.04 -0.93 5.68 -27.88 -0.16 -1.09 16 6 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 11 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.07 -1.29 6.42 -105.13 -0.67 -1.97 16 16 C -0.10 -1.81 10.13 -39.56 -0.40 -2.21 16 17 C 0.04 0.60 11.11 -17.93 -0.20 0.40 16 18 N -0.47 -7.68 10.32 -13.40 -0.14 -7.82 16 19 C 0.10 1.50 11.20 -17.36 -0.19 1.30 16 20 C 0.04 0.63 6.84 -84.01 -0.57 0.06 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 24 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.15 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -33.14 281.60 -7.61 -40.74 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.19 Total: -2.46 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.85 Total: -17.65 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.21 Total: -41.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.14 -7.61 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.374 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds