Wall clock time and date at job start Sun Mar 29 2020 21:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36669 * 125.04747 * 2 1 4 4 C 1.34457 * 109.96458 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.51632 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47212 * 265.02083 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46838 * 89.99826 * 11 9 7 13 13 H 1.48497 * 109.47419 * 209.99978 * 11 9 7 14 14 H 1.48499 * 109.47011 * 330.00539 * 11 9 7 15 15 C 1.45995 * 106.97083 * 0.25906 * 4 3 2 16 16 C 1.39839 * 135.23511 * 180.55260 * 15 4 3 17 17 C 1.36646 * 118.69540 * 179.52204 * 16 15 4 18 18 N 1.32299 * 121.32297 * 359.69644 * 17 16 15 19 19 C 1.31739 * 122.56935 * 0.02562 * 18 17 16 20 20 C 1.37538 * 125.04933 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47335 * 89.97691 * 1 2 3 22 22 H 1.08993 * 109.47403 * 209.97910 * 1 2 3 23 23 H 1.09000 * 109.47122 * 329.97776 * 1 2 3 24 24 H 1.08001 * 125.01767 * 359.97438 * 3 2 1 25 25 H 1.09002 * 109.47060 * 25.02138 * 5 4 3 26 26 H 1.09001 * 109.47380 * 145.02226 * 5 4 3 27 27 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 29 29 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 30 30 H 1.07995 * 120.65317 * 359.20064 * 16 15 4 31 31 H 1.07998 * 119.33865 * 179.71970 * 17 16 15 32 32 H 1.08008 * 119.85797 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2498 1.1189 0.0000 4 6 3.5481 0.7690 -0.0006 5 6 4.7291 1.7051 -0.0013 6 6 5.2059 1.9235 -1.4386 7 6 6.3865 2.8601 -1.4394 8 1 6.7597 3.2593 -0.5079 9 6 6.9908 3.2066 -2.6293 10 7 6.5366 2.7200 -3.7636 11 14 8.4538 4.3681 -2.6304 12 1 9.7088 3.5835 -2.5082 13 1 8.4733 5.1385 -3.8997 14 1 8.3425 5.3054 -1.4840 15 6 3.5962 -0.6901 -0.0073 16 6 4.6130 -1.6501 -0.0014 17 6 4.2674 -2.9721 -0.0015 18 7 3.0000 -3.3515 -0.0011 19 6 2.0021 -2.4914 -0.0010 20 6 2.2549 -1.1260 0.0005 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.8816 2.1342 -0.0004 25 1 4.4356 2.6606 0.4333 26 1 5.5372 1.2710 0.5875 27 1 5.4994 0.9680 -1.8732 28 1 4.3979 2.3576 -2.0275 29 1 6.9620 2.9635 -4.6007 30 1 5.6512 -1.3524 -0.0020 31 1 5.0443 -3.7222 -0.0016 32 1 0.9832 -2.8498 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:25 Heat of formation + Delta-G solvation = 37.836286 kcal Electronic energy + Delta-G solvation = -15131.963975 eV Core-core repulsion = 12670.773908 eV Total energy + Delta-G solvation = -2461.190067 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.51323 -39.09690 -36.21542 -34.52778 -32.56474 -31.50844 -30.58055 -28.00089 -26.01614 -24.36523 -23.47863 -22.58037 -20.46232 -18.56672 -17.83558 -17.81199 -16.55927 -16.55232 -16.30029 -15.52059 -15.21467 -14.74632 -14.57297 -14.39408 -13.93006 -13.34005 -13.30394 -13.12997 -12.79317 -12.74025 -12.46446 -12.33191 -11.68527 -11.61160 -11.20336 -10.74797 -10.58406 -10.52473 -9.49851 -8.56938 -8.16977 -6.29983 0.02657 0.52423 1.40962 1.42716 1.53747 1.72150 1.88075 2.42743 2.98321 3.14881 3.58644 3.74849 3.80683 3.90593 4.07727 4.41546 4.48773 4.50684 4.60207 4.72577 4.75769 4.76615 4.93866 5.03554 5.17704 5.34356 5.52325 5.62982 5.67393 5.82973 5.87644 6.10246 6.26248 6.35839 6.87994 7.08628 7.39579 8.93801 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033763 B = 0.006111 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.121050 B = 4580.536752 C = 5073.207506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.473 5.473 3 C 0.066 3.934 4 C -0.189 4.189 5 C -0.026 4.026 6 C 0.041 3.959 7 C -0.542 4.542 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.966 3.034 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.260 1.260 15 C -0.102 4.102 16 C -0.134 4.134 17 C 0.041 3.959 18 N -0.489 5.489 19 C 0.112 3.888 20 C 0.026 3.974 21 H 0.079 0.921 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.199 0.801 25 H 0.070 0.930 26 H 0.051 0.949 27 H -0.021 1.021 28 H -0.011 1.011 29 H 0.262 0.738 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -5.906 9.043 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.156 5.156 3 C -0.061 4.061 4 C -0.196 4.196 5 C -0.064 4.064 6 C 0.003 3.997 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.790 3.210 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.184 1.184 15 C -0.114 4.114 16 C -0.154 4.154 17 C -0.108 4.108 18 N -0.198 5.198 19 C -0.056 4.056 20 C -0.083 4.083 21 H 0.097 0.903 22 H 0.119 0.881 23 H 0.125 0.875 24 H 0.216 0.784 25 H 0.088 0.912 26 H 0.069 0.931 27 H -0.003 1.003 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.191 0.809 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.055 -6.795 8.873 17.185 hybrid contribution 1.241 1.474 -0.561 2.007 sum -11.814 -5.321 8.312 15.393 Atomic orbital electron populations 1.22343 0.73800 1.06375 1.04404 1.43947 1.07597 1.02792 1.61222 1.22139 0.89340 0.92469 1.02196 1.20655 0.95484 0.91658 1.11771 1.19820 0.93027 0.96115 0.97427 1.18878 0.94425 0.94192 0.92156 1.21743 1.15018 1.27996 0.93216 0.91811 1.26013 1.00552 0.98171 0.95167 1.70131 1.42896 1.46175 0.98427 0.85433 0.78929 0.78759 0.77843 1.19926 1.20810 1.18363 1.19739 0.93638 0.94265 1.03743 1.21443 0.99653 0.93513 1.00789 1.22285 0.93546 0.94232 1.00704 1.67584 1.00602 1.38026 1.13590 1.22208 0.99824 0.84785 0.98805 1.19541 0.90674 0.90947 1.07171 0.90268 0.88072 0.87460 0.78376 0.91172 0.93059 1.00272 0.99281 0.92886 0.85550 0.80888 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.04 127.77 1.41 2.37 16 2 N -0.47 -12.27 3.17 -539.27 -1.71 -13.98 16 3 C 0.07 2.00 11.20 83.07 0.93 2.93 16 4 C -0.19 -7.26 5.56 -18.72 -0.10 -7.36 16 5 C -0.03 -1.12 5.68 29.85 0.17 -0.95 16 6 C 0.04 2.23 4.95 29.85 0.15 2.38 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 10 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 11 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 C -0.10 -3.88 6.42 -20.19 -0.13 -4.01 16 16 C -0.13 -4.84 10.13 22.28 0.23 -4.62 16 17 C 0.04 1.29 11.11 84.25 0.94 2.23 16 18 N -0.49 -15.23 10.32 -196.32 -2.03 -17.25 16 19 C 0.11 3.10 11.20 84.86 0.95 4.05 16 20 C 0.03 0.82 6.84 39.08 0.27 1.09 16 21 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.11 0.98 8.13 -2.39 -0.02 0.96 16 24 H 0.20 4.62 8.06 -2.91 -0.02 4.60 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 31 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.90 281.60 5.17 -68.73 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.10 Total: 6.57 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.50 Total: -32.66 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -3.45 Total: -89.38 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.90 5.17 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.566 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds