Wall clock time and date at job start Sun Mar 29 2020 21:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41123 * 120.22711 * 2 1 4 4 C 1.38245 * 134.81789 * 0.32870 * 3 2 1 5 5 N 1.33991 * 107.90800 * 180.02562 * 4 3 2 6 6 H 0.97001 * 125.02591 * 179.87876 * 5 4 3 7 7 N 1.39956 * 109.95472 * 359.60196 * 5 4 3 8 8 C 1.32065 * 108.96204 * 0.25101 * 7 5 4 9 9 C 1.41156 * 134.68677 * 180.02562 * 8 7 5 10 10 C 1.35635 * 119.59467 * 179.97438 * 9 8 7 11 11 C 1.35652 * 120.23368 * 180.02562 * 2 1 3 12 12 C 1.50707 * 119.13615 * 0.02562 * 11 2 1 13 13 C 1.52989 * 109.47064 * 85.02315 * 12 11 2 14 14 C 1.50703 * 109.47038 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00276 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47272 * 59.99709 * 18 16 14 20 20 H 1.48494 * 109.47590 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47197 * 300.00310 * 18 16 14 22 22 H 1.09001 * 109.47663 * 269.99921 * 1 2 3 23 23 H 1.08996 * 109.47520 * 30.00251 * 1 2 3 24 24 H 1.09005 * 109.47055 * 150.00076 * 1 2 3 25 25 H 1.08000 * 126.05020 * 359.88601 * 4 3 2 26 26 H 1.07994 * 120.19833 * 359.97438 * 9 8 7 27 27 H 1.08004 * 119.08856 * 180.02562 * 10 9 8 28 28 H 1.09002 * 109.46704 * 205.02408 * 12 11 2 29 29 H 1.08996 * 109.47122 * 325.01749 * 12 11 2 30 30 H 1.09002 * 109.47436 * 299.99645 * 13 12 11 31 31 H 1.09005 * 109.47331 * 59.99766 * 13 12 11 32 32 H 0.96999 * 119.99819 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.2194 0.0000 4 6 1.8607 2.5550 0.0056 5 7 2.9862 3.2821 0.0016 6 1 3.0228 4.2514 0.0024 7 7 4.1012 2.4363 0.0024 8 6 3.6883 1.1818 0.0014 9 6 4.3312 -0.0748 0.0020 10 6 3.5863 -1.2083 0.0011 11 6 2.1900 -1.1720 -0.0005 12 6 1.4222 -2.4688 -0.0017 13 6 1.0553 -2.8429 -1.4390 14 6 0.2880 -4.1400 -1.4403 15 1 0.0823 -4.6466 -0.5089 16 6 -0.1523 -4.6794 -2.6303 17 7 0.0978 -4.0622 -3.7645 18 14 -1.1040 -6.2867 -2.6318 19 1 -2.3434 -6.1290 -1.8291 20 1 -1.4601 -6.6500 -4.0269 21 1 -0.2646 -7.3596 -2.0404 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.8531 2.9437 0.0100 26 1 5.4096 -0.1333 0.0031 27 1 4.0867 -2.1655 0.0020 28 1 2.0382 -3.2561 0.4327 29 1 0.5124 -2.3529 0.5872 30 1 0.4392 -2.0556 -1.8735 31 1 1.9652 -2.9588 -2.0279 32 1 -0.2117 -4.4420 -4.6017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:29 Heat of formation + Delta-G solvation = 71.298515 kcal Electronic energy + Delta-G solvation = -15177.179697 eV Core-core repulsion = 12717.440661 eV Total energy + Delta-G solvation = -2459.739035 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04415 -37.72176 -33.83330 -32.80689 -31.40822 -30.27639 -28.40877 -26.72668 -24.66456 -23.19820 -21.61597 -19.98983 -19.38277 -18.06675 -16.41892 -16.03902 -14.84918 -14.74439 -14.69695 -14.40718 -13.11995 -13.02167 -12.74787 -12.58136 -12.30070 -11.78219 -11.53338 -11.37310 -11.01773 -10.86199 -10.70925 -10.57445 -10.06186 -9.82418 -9.71355 -9.33961 -9.02138 -8.36164 -8.30023 -7.07477 -5.95597 -3.98563 0.89339 2.19306 2.69497 2.83668 3.35591 3.40288 3.42512 4.19386 4.49125 4.53789 4.80195 5.30066 5.39638 5.46474 5.50288 5.66216 5.80875 6.01191 6.06716 6.13526 6.32165 6.44060 6.71327 6.71969 6.78326 6.91049 7.07025 7.20667 7.29663 7.36279 7.74991 7.80199 7.89674 8.06190 8.45928 9.08930 9.65264 11.15142 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.005625 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.400729 B = 4976.783925 C = 5178.294543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.188 4.188 4 C 0.068 3.932 5 N -0.436 5.436 6 H 0.438 0.562 7 N -0.319 5.319 8 C 0.104 3.896 9 C -0.127 4.127 10 C -0.051 4.051 11 C -0.099 4.099 12 C -0.076 4.076 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.183 0.817 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.016 0.984 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 12.345 8.008 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.087 4.087 5 N -0.136 5.136 6 H 0.282 0.718 7 N -0.148 5.148 8 C -0.049 4.049 9 C -0.148 4.148 10 C -0.073 4.073 11 C -0.101 4.101 12 C -0.113 4.113 13 C -0.008 4.008 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.200 0.800 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.749 13.115 7.809 15.717 hybrid contribution -1.186 -0.781 -0.218 1.437 sum 2.563 12.334 7.591 14.708 Atomic orbital electron populations 1.20913 0.91277 1.03758 1.01814 1.18812 0.95244 0.89948 0.98551 1.19524 0.93467 0.92644 1.14123 1.22552 0.92463 0.91529 1.02199 1.46174 1.04005 1.09624 1.53827 0.71821 1.77568 1.05609 1.00129 1.31487 1.20940 0.92806 0.92385 0.98748 1.19768 0.99107 0.88300 1.07658 1.20722 0.93620 0.97783 0.95183 1.19597 0.93359 0.95826 1.01298 1.20797 0.97811 0.91231 1.01481 1.19086 0.96574 0.96007 0.89131 1.21247 1.34957 1.07109 0.92660 0.92694 1.25013 0.96288 0.97355 0.95694 1.69967 1.46552 1.39226 0.97650 0.86690 0.80451 0.84141 0.76892 1.20269 1.21374 1.20266 0.91641 0.92497 0.89113 0.80030 0.85917 0.85572 0.92515 0.92190 0.96216 0.96535 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.09 36.01 0.33 -1.54 16 2 C -0.02 -0.40 5.89 -104.45 -0.62 -1.02 16 3 C -0.19 -3.04 6.13 -105.19 -0.64 -3.69 16 4 C 0.07 0.82 11.80 -16.61 -0.20 0.63 16 5 N -0.44 -5.08 7.18 30.84 0.22 -4.86 16 6 H 0.44 3.16 8.96 -182.71 -1.64 1.52 16 7 N -0.32 -5.07 12.70 33.26 0.42 -4.65 16 8 C 0.10 1.79 7.49 -83.05 -0.62 1.17 16 9 C -0.13 -2.10 10.08 -39.41 -0.40 -2.49 16 10 C -0.05 -0.87 9.50 -39.98 -0.38 -1.25 16 11 C -0.10 -1.86 5.09 -105.01 -0.53 -2.39 16 12 C -0.08 -1.55 4.55 -27.88 -0.13 -1.68 16 13 C 0.03 0.74 4.73 -27.89 -0.13 0.61 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 24 H 0.09 1.64 5.25 -51.93 -0.27 1.36 16 25 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.13 1.95 8.03 -52.48 -0.42 1.53 16 28 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 29 H 0.06 1.18 6.87 -51.93 -0.36 0.82 16 30 H 0.02 0.53 6.85 -51.93 -0.36 0.17 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -33.07 273.32 -8.36 -41.43 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.10 Total: -1.43 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -3.73 Total: -24.94 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 1.38 Total: -35.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.07 -8.36 -41.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.724 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds