Wall clock time and date at job start Sun Mar 29 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41123 * 120.22711 * 2 1 4 4 C 1.38245 * 134.81789 * 0.32870 * 3 2 1 5 5 N 1.33991 * 107.90800 * 180.02562 * 4 3 2 6 6 H 0.97001 * 125.02591 * 179.87876 * 5 4 3 7 7 N 1.39956 * 109.95472 * 359.60196 * 5 4 3 8 8 C 1.32065 * 108.96204 * 0.25101 * 7 5 4 9 9 C 1.41156 * 134.68677 * 180.02562 * 8 7 5 10 10 C 1.35635 * 119.59467 * 179.97438 * 9 8 7 11 11 C 1.35652 * 120.23368 * 180.02562 * 2 1 3 12 12 C 1.50707 * 119.13615 * 0.02562 * 11 2 1 13 13 C 1.52989 * 109.47064 * 85.02315 * 12 11 2 14 14 C 1.50703 * 109.47038 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00186 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00276 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47272 * 59.99709 * 18 16 14 20 20 H 1.48494 * 109.47590 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47197 * 300.00310 * 18 16 14 22 22 H 1.09001 * 109.47663 * 269.99921 * 1 2 3 23 23 H 1.08996 * 109.47520 * 30.00251 * 1 2 3 24 24 H 1.09005 * 109.47055 * 150.00076 * 1 2 3 25 25 H 1.08000 * 126.05020 * 359.88601 * 4 3 2 26 26 H 1.07994 * 120.19833 * 359.97438 * 9 8 7 27 27 H 1.08004 * 119.08856 * 180.02562 * 10 9 8 28 28 H 1.09002 * 109.46704 * 205.02408 * 12 11 2 29 29 H 1.08996 * 109.47122 * 325.01749 * 12 11 2 30 30 H 1.09002 * 109.47436 * 299.99645 * 13 12 11 31 31 H 1.09005 * 109.47331 * 59.99766 * 13 12 11 32 32 H 0.96999 * 119.99819 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.2194 0.0000 4 6 1.8607 2.5550 0.0056 5 7 2.9862 3.2821 0.0016 6 1 3.0228 4.2514 0.0024 7 7 4.1012 2.4363 0.0024 8 6 3.6883 1.1818 0.0014 9 6 4.3312 -0.0748 0.0020 10 6 3.5863 -1.2083 0.0011 11 6 2.1900 -1.1720 -0.0005 12 6 1.4222 -2.4688 -0.0017 13 6 1.0553 -2.8429 -1.4390 14 6 0.2880 -4.1400 -1.4403 15 1 0.0823 -4.6466 -0.5089 16 6 -0.1523 -4.6794 -2.6303 17 7 0.0978 -4.0622 -3.7645 18 14 -1.1040 -6.2867 -2.6318 19 1 -2.3434 -6.1290 -1.8291 20 1 -1.4601 -6.6500 -4.0269 21 1 -0.2646 -7.3596 -2.0404 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 0.8531 2.9437 0.0100 26 1 5.4096 -0.1333 0.0031 27 1 4.0867 -2.1655 0.0020 28 1 2.0382 -3.2561 0.4327 29 1 0.5124 -2.3529 0.5872 30 1 0.4392 -2.0556 -1.8735 31 1 1.9652 -2.9588 -2.0279 32 1 -0.2117 -4.4420 -4.6017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:28 Heat of formation + Delta-G solvation = 50.657901 kcal Electronic energy + Delta-G solvation = -15178.074741 eV Core-core repulsion = 12717.440661 eV Total energy + Delta-G solvation = -2460.634080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.17959 -39.02619 -35.60581 -34.32693 -32.99941 -31.57356 -29.82752 -28.15591 -26.36263 -24.47369 -23.27067 -21.46315 -20.57410 -19.14378 -18.47571 -17.30596 -16.49763 -16.15317 -16.04694 -15.84079 -14.54626 -14.34160 -14.22725 -13.95851 -13.87662 -13.49766 -13.07102 -12.84971 -12.71742 -12.36517 -12.29038 -12.11940 -11.63504 -11.53552 -11.27471 -10.97837 -10.80287 -10.48106 -9.57726 -8.34836 -8.11860 -6.24620 -0.25496 0.91640 1.43837 1.46778 1.52362 1.54626 1.92287 2.45726 2.91221 3.19478 3.38423 3.79356 4.16524 4.23393 4.31459 4.45254 4.60020 4.69322 4.83288 4.90736 4.91543 5.02669 5.12132 5.28802 5.43307 5.52348 5.59434 5.61975 5.75655 5.93901 6.03207 6.08857 6.31656 6.35119 6.65649 6.93172 7.44393 8.97887 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.005625 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.400729 B = 4976.783925 C = 5178.294543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.014 4.014 3 C -0.229 4.229 4 C 0.110 3.890 5 N -0.414 5.414 6 H 0.460 0.540 7 N -0.348 5.348 8 C 0.083 3.917 9 C -0.136 4.136 10 C -0.062 4.062 11 C -0.139 4.139 12 C -0.057 4.057 13 C 0.038 3.962 14 C -0.540 4.540 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.268 1.268 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.235 0.765 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.056 0.944 29 H 0.066 0.934 30 H -0.002 1.002 31 H -0.018 1.018 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 13.771 8.997 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.016 4.016 3 C -0.238 4.238 4 C -0.048 4.048 5 N -0.116 5.116 6 H 0.308 0.692 7 N -0.178 5.178 8 C -0.070 4.070 9 C -0.157 4.157 10 C -0.085 4.085 11 C -0.141 4.141 12 C -0.095 4.095 13 C 0.001 3.999 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.787 3.213 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.193 1.193 22 H 0.107 0.893 23 H 0.102 0.898 24 H 0.076 0.924 25 H 0.251 0.749 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.000 1.000 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.558 14.570 8.818 17.222 hybrid contribution -0.832 -1.013 -0.524 1.412 sum 1.726 13.557 8.293 15.986 Atomic orbital electron populations 1.20923 0.90047 1.03436 1.03146 1.19072 0.96206 0.90137 0.96185 1.19783 0.93132 0.94014 1.16897 1.23292 0.94268 0.89847 0.97431 1.46259 1.03187 1.10669 1.51487 0.69200 1.77518 1.07354 0.99993 1.32930 1.21168 0.93747 0.92882 0.99167 1.19936 0.99869 0.88287 1.07577 1.20776 0.93364 0.98469 0.95852 1.19493 0.93974 0.95402 1.05224 1.20478 0.98378 0.92670 0.97942 1.18913 0.94258 0.94794 0.91901 1.21709 1.34977 1.08015 0.93095 0.91972 1.25955 0.97312 1.01211 0.95221 1.70116 1.47880 1.41179 0.98352 0.85542 0.79252 0.79424 0.77070 1.18935 1.21129 1.19323 0.89337 0.89794 0.92374 0.74859 0.84500 0.85105 0.92526 0.91561 0.98398 0.99999 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 9.09 71.24 0.65 -2.84 16 2 C -0.01 -0.46 5.89 -19.76 -0.12 -0.58 16 3 C -0.23 -6.96 6.13 -20.23 -0.12 -7.08 16 4 C 0.11 2.18 11.80 84.37 1.00 3.17 16 5 N -0.41 -8.15 7.18 -56.34 -0.40 -8.55 16 6 H 0.46 4.68 8.96 -213.41 -1.91 2.77 16 7 N -0.35 -10.47 12.70 -48.69 -0.62 -11.09 16 8 C 0.08 2.77 7.49 42.16 0.32 3.09 16 9 C -0.14 -4.54 10.08 22.38 0.23 -4.32 16 10 C -0.06 -2.22 9.50 22.01 0.21 -2.01 16 11 C -0.14 -5.34 5.09 -20.11 -0.10 -5.44 16 12 C -0.06 -2.43 4.55 29.85 0.14 -2.29 16 13 C 0.04 2.05 4.73 29.85 0.14 2.19 16 14 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 18 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.08 1.95 7.94 -2.39 -0.02 1.93 16 24 H 0.06 2.10 5.25 -2.38 -0.01 2.09 16 25 H 0.24 2.08 8.06 -2.91 -0.02 2.05 16 26 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.13 4.29 8.03 -2.91 -0.02 4.27 16 28 H 0.06 2.32 8.02 -2.39 -0.02 2.30 16 29 H 0.07 2.65 6.87 -2.39 -0.02 2.63 16 30 H 0.00 -0.13 6.85 -2.39 -0.02 -0.15 16 31 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.87 273.32 3.53 -70.34 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -0.78 Total: 6.39 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 3.02 Total: -46.10 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -0.74 Total: -76.89 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -73.87 3.53 -70.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.999 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds