Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39684 * 119.14108 * 2 1 4 4 C 1.35631 * 121.81718 * 179.97438 * 3 2 1 5 5 C 1.41149 * 119.60192 * 0.02562 * 4 3 2 6 6 N 1.32068 * 134.68918 * 179.97438 * 5 4 3 7 7 N 1.39953 * 108.96260 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.02731 * 179.97438 * 7 6 5 9 9 C 1.33990 * 109.95415 * 0.24517 * 7 6 5 10 10 C 1.38241 * 107.90997 * 359.60842 * 9 7 6 11 11 C 1.35663 * 119.13747 * 179.97438 * 2 1 3 12 12 C 1.50704 * 120.22882 * 0.02562 * 11 2 1 13 13 C 1.53003 * 109.46979 * 268.47673 * 12 11 2 14 14 C 1.50694 * 109.46917 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00510 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00075 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99646 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00452 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47138 * 89.99905 * 18 16 14 20 20 H 1.48495 * 109.47343 * 209.99916 * 18 16 14 21 21 H 1.48502 * 109.46675 * 330.00207 * 18 16 14 22 22 H 1.08998 * 109.47231 * 95.48427 * 1 2 3 23 23 H 1.08997 * 109.47305 * 215.49062 * 1 2 3 24 24 H 1.09005 * 109.46803 * 335.48907 * 1 2 3 25 25 H 1.07998 * 119.08634 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.19984 * 179.97438 * 4 3 2 27 27 H 1.08010 * 126.04568 * 179.75321 * 9 7 6 28 28 H 1.09000 * 109.46965 * 28.47523 * 12 11 2 29 29 H 1.09001 * 109.47084 * 148.47690 * 12 11 2 30 30 H 1.09002 * 109.46850 * 300.00185 * 13 12 11 31 31 H 1.09001 * 109.47199 * 60.00087 * 13 12 11 32 32 H 0.96996 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2200 0.0000 4 6 3.5420 1.2834 0.0005 5 6 4.2958 0.0900 0.0005 6 7 5.5856 -0.1939 0.0005 7 7 5.7453 -1.5842 -0.0001 8 1 6.5979 -2.0467 -0.0005 9 6 4.5462 -2.1822 -0.0058 10 6 3.5787 -1.1948 -0.0001 11 6 2.1675 -1.1850 0.0005 12 6 1.3996 -2.4817 0.0005 13 6 1.1722 -2.9397 1.4426 14 6 0.4038 -4.2360 1.4426 15 1 0.1076 -4.6882 0.5077 16 6 0.0797 -4.8453 2.6362 17 7 0.4408 -4.2949 3.7748 18 14 -0.8722 -6.4526 2.6363 19 1 0.0798 -7.5917 2.5992 20 1 -1.6989 -6.5383 3.8669 21 1 -1.7542 -6.5055 1.4428 22 1 -0.3633 -0.0982 -1.0229 23 1 -0.3634 -0.8367 0.5966 24 1 -0.3633 0.9351 0.4264 25 1 1.6185 2.1382 0.0004 26 1 4.0411 2.2411 0.0001 27 1 4.3672 -3.2474 -0.0113 28 1 0.4374 -2.3341 -0.4899 29 1 1.9684 -3.2408 -0.5364 30 1 2.1344 -3.0872 1.9329 31 1 0.6033 -2.1806 1.9795 32 1 0.2131 -4.7237 4.6145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = 69.638657 kcal Electronic energy + Delta-G solvation = -15332.537089 eV Core-core repulsion = 12872.726077 eV Total energy + Delta-G solvation = -2459.811012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95086 -37.62221 -34.19429 -32.50942 -31.25545 -29.97083 -29.05563 -26.30824 -24.72927 -23.18765 -21.23801 -20.71237 -18.93859 -17.96364 -16.43860 -15.91380 -14.92749 -14.66089 -14.63688 -14.43302 -13.22351 -12.93900 -12.72913 -12.63570 -12.21409 -11.59989 -11.38270 -11.31215 -11.09120 -10.94422 -10.84520 -10.66670 -10.15556 -9.79664 -9.73713 -9.27719 -9.04226 -8.37100 -8.32838 -7.02668 -6.01173 -4.04693 0.99159 2.20902 2.79702 2.96750 3.29816 3.36902 3.39807 4.21532 4.44380 4.63110 4.98949 5.34104 5.37731 5.44136 5.60958 5.74415 5.88347 5.99343 6.07454 6.18590 6.30522 6.53833 6.59262 6.69563 6.82088 6.91520 6.99916 7.27578 7.34024 7.36362 7.68343 7.81585 7.89397 7.99605 8.38875 9.02847 9.59516 11.09442 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.007017 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.285733 B = 3989.285257 C = 4588.605069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.147 4.147 3 C -0.053 4.053 4 C -0.135 4.135 5 C 0.107 3.893 6 N -0.325 5.325 7 N -0.435 5.435 8 H 0.439 0.561 9 C 0.093 3.907 10 C -0.195 4.195 11 C 0.022 3.978 12 C -0.084 4.084 13 C 0.033 3.967 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.189 0.811 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 6.370 -7.961 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.149 4.149 3 C -0.075 4.075 4 C -0.156 4.156 5 C -0.046 4.046 6 N -0.154 5.154 7 N -0.135 5.135 8 H 0.283 0.717 9 C -0.064 4.064 10 C -0.204 4.204 11 C 0.020 3.980 12 C -0.121 4.121 13 C -0.004 4.004 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.206 0.794 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.783 6.860 -7.763 12.383 hybrid contribution -0.735 -1.555 0.234 1.736 sum 6.048 5.305 -7.529 11.018 Atomic orbital electron populations 1.20774 0.91389 1.02794 1.01653 1.19070 0.96143 0.91984 1.07659 1.20550 0.93477 0.97327 0.96150 1.19653 0.92809 0.94444 1.08706 1.20945 0.90317 0.94984 0.98376 1.77545 1.16569 0.89193 1.32086 1.46217 1.07963 1.05769 1.53537 0.71718 1.22804 0.85014 0.99327 0.99254 1.19501 0.94336 0.91678 1.14902 1.19352 0.90141 0.96124 0.92431 1.20901 0.98101 0.91272 1.01827 1.19024 0.96996 0.95792 0.88552 1.21256 1.35505 1.06986 0.92328 0.92590 1.25019 0.96056 0.97577 0.95679 1.69975 1.46668 1.39257 0.97303 0.86624 0.80053 0.83974 0.77533 1.20748 1.21238 1.19825 0.92288 0.90233 0.92617 0.86181 0.86140 0.79421 0.91529 0.92507 0.96623 0.96146 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 8.93 36.00 0.32 -1.38 16 2 C -0.15 -2.54 5.84 -105.01 -0.61 -3.16 16 3 C -0.05 -0.81 9.50 -39.97 -0.38 -1.19 16 4 C -0.13 -2.16 10.08 -39.41 -0.40 -2.55 16 5 C 0.11 1.92 7.49 -83.05 -0.62 1.30 16 6 N -0.33 -5.54 12.70 33.26 0.42 -5.11 16 7 N -0.43 -5.96 7.18 30.84 0.22 -5.74 16 8 H 0.44 4.07 8.96 -182.71 -1.64 2.44 16 9 C 0.09 1.40 11.82 -16.61 -0.20 1.21 16 10 C -0.19 -3.53 6.13 -105.19 -0.64 -4.18 16 11 C 0.02 0.41 5.15 -104.45 -0.54 -0.12 16 12 C -0.08 -1.69 4.53 -27.88 -0.13 -1.81 16 13 C 0.03 0.84 4.82 -27.88 -0.13 0.70 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 1.42 6.00 -51.93 -0.31 1.11 16 24 H 0.05 0.75 8.01 -51.93 -0.42 0.33 16 25 H 0.12 1.46 8.03 -52.49 -0.42 1.04 16 26 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 28 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 29 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.55 7.38 -51.93 -0.38 0.17 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -32.38 274.31 -8.41 -40.79 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.16 Total: -0.25 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.74 Total: -24.23 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 1.38 Total: -36.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.38 -8.41 -40.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.429 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds